Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47488 * 2 1 4 4 C 1.50703 * 109.46489 * 239.99859 * 2 1 3 5 5 H 1.08002 * 119.99885 * 239.99908 * 4 2 1 6 6 C 1.37876 * 120.00124 * 60.00593 * 4 2 1 7 7 N 1.31518 * 119.99800 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00042 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47176 * 59.99996 * 8 6 4 10 10 H 1.48501 * 109.47027 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47295 * 299.99836 * 8 6 4 12 12 C 1.52995 * 109.47079 * 120.00645 * 2 1 3 13 13 N 1.46505 * 109.47008 * 299.99167 * 12 2 1 14 14 C 1.34773 * 120.00203 * 180.02562 * 13 12 2 15 15 O 1.21606 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.47432 * 119.99867 * 180.02562 * 14 13 12 17 17 C 1.41288 * 126.41675 * 359.97438 * 16 14 13 18 18 N 1.30448 * 108.02410 * 180.24577 * 17 16 14 19 19 N 1.39937 * 108.89593 * 359.64304 * 18 17 16 20 20 C 1.46502 * 125.75646 * 180.15464 * 19 18 17 21 21 C 1.52993 * 117.50054 * 163.86770 * 20 19 18 22 22 C 1.53001 * 117.50009 * 95.24247 * 20 19 18 23 23 C 1.34263 * 108.49211 * 0.36151 * 19 18 17 24 24 H 1.09009 * 109.46614 * 299.99884 * 1 2 3 25 25 H 1.08998 * 109.46994 * 59.99506 * 1 2 3 26 26 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47241 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46954 * 300.00525 * 3 2 1 29 29 H 1.08996 * 109.47267 * 60.00086 * 3 2 1 30 30 H 0.96998 * 119.99717 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.47089 * 179.97438 * 12 2 1 32 32 H 1.08999 * 109.48030 * 59.99514 * 12 2 1 33 33 H 0.97001 * 119.99821 * 0.02562 * 13 12 2 34 34 H 1.08002 * 125.98501 * 359.97438 * 17 16 14 35 35 H 1.09002 * 115.54506 * 309.57290 * 20 19 18 36 36 H 1.09004 * 117.50152 * 359.97438 * 21 20 19 37 37 H 1.09010 * 117.49858 * 145.02033 * 21 20 19 38 38 H 1.08992 * 117.49961 * 214.98307 * 22 20 19 39 39 H 1.09005 * 117.49626 * 359.97438 * 22 20 19 40 40 H 1.08003 * 126.29284 * 179.76273 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3222 -1.1196 -4.0080 9 1 1.8276 -2.5198 -4.0082 10 1 1.8267 -0.4199 -5.2205 11 1 3.8072 -1.1192 -4.0079 12 6 2.0400 -0.7214 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6694 15 8 2.5776 -1.4792 3.7810 16 6 1.3860 0.2038 4.8732 17 6 0.5701 1.3569 4.9017 18 7 0.3556 1.6689 6.1500 19 7 1.0075 0.7393 6.9679 20 6 1.0075 0.7396 8.4329 21 6 1.4471 -0.5441 9.1397 22 6 -0.0279 -0.1376 9.1396 23 6 1.6368 -0.1505 6.1837 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6769 1.9563 0.8900 30 1 0.7082 1.1609 -3.4844 31 1 3.1301 -0.7218 1.2489 32 1 1.6767 -1.7490 1.2492 33 1 0.9939 0.7578 2.3564 34 1 0.1939 1.8895 4.0407 35 1 1.2685 1.6879 8.9028 36 1 1.7360 -1.3892 8.5147 37 1 1.9976 -0.4406 10.0749 38 1 -0.4478 0.2334 10.0745 39 1 -0.7094 -0.7146 8.5144 40 1 2.2305 -0.9889 6.5169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600000947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = 62.356020 kcal Electronic energy + Delta-G solvation = -21101.473271 eV Core-core repulsion = 17918.851640 eV Total energy + Delta-G solvation = -3182.621631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.46390 -38.85266 -37.45315 -36.22223 -33.22925 -31.46848 -30.80570 -30.07750 -25.83146 -25.67694 -25.12747 -23.63754 -23.14512 -22.09544 -20.36064 -19.79468 -18.74250 -18.07630 -16.34359 -16.08110 -15.65176 -15.07277 -14.97332 -14.60139 -14.49680 -14.07146 -13.55397 -13.06735 -12.97656 -12.72810 -12.64496 -12.12603 -12.08934 -11.48978 -11.37228 -11.30592 -11.15144 -10.87859 -10.81091 -10.69831 -10.33677 -10.16741 -9.61397 -9.58381 -9.51750 -9.21156 -8.75271 -8.73575 -8.37930 -8.18682 -5.98512 -4.08469 1.51660 2.05125 2.23562 3.06559 3.32663 3.36841 3.40375 3.84057 3.88875 4.04790 4.19198 4.38648 4.43772 4.62127 4.74550 5.04499 5.20052 5.28120 5.28889 5.33719 5.43090 5.49140 5.79374 6.27509 6.39229 6.39505 6.57352 6.73164 6.84535 6.87790 6.99951 7.07336 7.11698 7.40825 7.47714 7.60477 7.73169 8.05728 8.13859 8.23991 8.43003 8.82006 8.92679 9.57106 11.02873 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046472 B = 0.003260 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.364721 B = 8585.640784 C = 8915.338912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.134 3.866 13 N -0.711 5.711 14 C 0.584 3.416 15 O -0.563 6.563 16 C -0.281 4.281 17 C 0.081 3.919 18 N -0.294 5.294 19 N -0.341 5.341 20 C 0.080 3.920 21 C -0.170 4.170 22 C -0.174 4.174 23 C 0.120 3.880 24 H 0.007 0.993 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.192 0.808 35 H 0.142 0.858 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.686 1.290 20.676 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.361 5.361 14 C 0.370 3.630 15 O -0.444 6.444 16 C -0.296 4.296 17 C -0.106 4.106 18 N -0.113 5.113 19 N -0.119 5.119 20 C -0.023 4.023 21 C -0.208 4.208 22 C -0.212 4.212 23 C -0.030 4.030 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.209 0.791 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.849 1.543 21.496 21.630 hybrid contribution 0.439 -0.611 -1.488 1.667 sum -1.410 0.932 20.008 20.080 Atomic orbital electron populations 1.21833 0.97761 0.99199 1.00077 1.18349 0.92796 0.92762 0.90549 1.21830 0.98616 0.98352 1.00082 1.20963 1.31484 1.12094 0.89930 0.92480 1.24875 0.94881 0.94925 0.98809 1.69797 1.36650 1.22760 1.23285 0.86638 0.79228 0.79789 0.82221 1.20306 1.21363 1.20299 1.21710 0.98148 0.95763 0.83263 1.46080 1.52586 1.31739 1.05676 1.17238 0.79904 0.83366 0.82477 1.90727 1.39595 1.26959 1.87087 1.20457 1.12310 1.03081 0.93758 1.24175 0.96104 0.95130 0.95237 1.77183 1.19163 1.13263 1.01698 1.47804 1.38051 1.20987 1.05065 1.21772 1.07301 0.98061 0.75146 1.23477 0.98265 0.96572 1.02518 1.23486 0.92686 1.02334 1.02722 1.22849 0.95460 0.94715 0.89991 0.97452 0.89618 0.95441 0.95430 0.89622 0.97443 0.92980 0.92695 0.92708 0.76836 0.79126 0.84080 0.87414 0.86436 0.86943 0.87803 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.34 8.01 -34.44 -0.28 -13.62 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.89 4.50 -4.04 -0.02 2.87 16 13 N -0.71 -13.11 4.95 -61.38 -0.30 -13.41 16 14 C 0.58 10.75 7.81 -12.52 -0.10 10.65 16 15 O -0.56 -12.12 16.90 5.27 0.09 -12.03 16 16 C -0.28 -4.25 6.13 -105.06 -0.64 -4.89 16 17 C 0.08 1.10 11.50 -16.98 -0.20 0.91 16 18 N -0.29 -4.04 12.50 30.86 0.39 -3.65 16 19 N -0.34 -4.01 3.91 -54.31 -0.21 -4.23 16 20 C 0.08 0.63 7.12 -67.93 -0.48 0.15 16 21 C -0.17 -0.91 9.97 -26.73 -0.27 -1.18 16 22 C -0.17 -1.07 10.46 -26.73 -0.28 -1.35 16 23 C 0.12 1.54 10.62 -16.56 -0.18 1.36 16 24 H 0.01 0.13 6.86 -51.92 -0.36 -0.23 16 25 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.05 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.40 6.56 5.12 -40.82 -0.21 6.36 16 34 H 0.19 2.13 7.50 -52.49 -0.39 1.74 16 35 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 0.61 6.98 -51.93 -0.36 0.25 16 37 H 0.12 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.18 1.97 7.20 -52.48 -0.38 1.59 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -31.00 330.26 -7.18 -38.18 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.61 Total: 5.11 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.01 Total: -7.56 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.39 Total: -44.49 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.00 -7.18 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.539 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds