Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47488 * 2 1 4 4 C 1.50703 * 109.46489 * 239.99859 * 2 1 3 5 5 H 1.08002 * 119.99885 * 239.99908 * 4 2 1 6 6 C 1.37876 * 120.00124 * 60.00593 * 4 2 1 7 7 N 1.31518 * 119.99800 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00042 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47176 * 59.99996 * 8 6 4 10 10 H 1.48501 * 109.47027 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47295 * 299.99836 * 8 6 4 12 12 C 1.52995 * 109.47079 * 120.00645 * 2 1 3 13 13 N 1.46505 * 109.47008 * 299.99167 * 12 2 1 14 14 C 1.34773 * 120.00203 * 180.02562 * 13 12 2 15 15 O 1.21606 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.47432 * 119.99867 * 180.02562 * 14 13 12 17 17 C 1.41288 * 126.41675 * 359.97438 * 16 14 13 18 18 N 1.30448 * 108.02410 * 180.24577 * 17 16 14 19 19 N 1.39937 * 108.89593 * 359.64304 * 18 17 16 20 20 C 1.46502 * 125.75646 * 180.15464 * 19 18 17 21 21 C 1.52993 * 117.50054 * 163.86770 * 20 19 18 22 22 C 1.53001 * 117.50009 * 95.24247 * 20 19 18 23 23 C 1.34263 * 108.49211 * 0.36151 * 19 18 17 24 24 H 1.09009 * 109.46614 * 299.99884 * 1 2 3 25 25 H 1.08998 * 109.46994 * 59.99506 * 1 2 3 26 26 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47241 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46954 * 300.00525 * 3 2 1 29 29 H 1.08996 * 109.47267 * 60.00086 * 3 2 1 30 30 H 0.96998 * 119.99717 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.47089 * 179.97438 * 12 2 1 32 32 H 1.08999 * 109.48030 * 59.99514 * 12 2 1 33 33 H 0.97001 * 119.99821 * 0.02562 * 13 12 2 34 34 H 1.08002 * 125.98501 * 359.97438 * 17 16 14 35 35 H 1.09002 * 115.54506 * 309.57290 * 20 19 18 36 36 H 1.09004 * 117.50152 * 359.97438 * 21 20 19 37 37 H 1.09010 * 117.49858 * 145.02033 * 21 20 19 38 38 H 1.08992 * 117.49961 * 214.98307 * 22 20 19 39 39 H 1.09005 * 117.49626 * 359.97438 * 22 20 19 40 40 H 1.08003 * 126.29284 * 179.76273 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3222 -1.1196 -4.0080 9 1 1.8276 -2.5198 -4.0082 10 1 1.8267 -0.4199 -5.2205 11 1 3.8072 -1.1192 -4.0079 12 6 2.0400 -0.7214 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6694 15 8 2.5776 -1.4792 3.7810 16 6 1.3860 0.2038 4.8732 17 6 0.5701 1.3569 4.9017 18 7 0.3556 1.6689 6.1500 19 7 1.0075 0.7393 6.9679 20 6 1.0075 0.7396 8.4329 21 6 1.4471 -0.5441 9.1397 22 6 -0.0279 -0.1376 9.1396 23 6 1.6368 -0.1505 6.1837 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6769 1.9563 0.8900 30 1 0.7082 1.1609 -3.4844 31 1 3.1301 -0.7218 1.2489 32 1 1.6767 -1.7490 1.2492 33 1 0.9939 0.7578 2.3564 34 1 0.1939 1.8895 4.0407 35 1 1.2685 1.6879 8.9028 36 1 1.7360 -1.3892 8.5147 37 1 1.9976 -0.4406 10.0749 38 1 -0.4478 0.2334 10.0745 39 1 -0.7094 -0.7146 8.5144 40 1 2.2305 -0.9889 6.5169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600000947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = 43.442498 kcal Electronic energy + Delta-G solvation = -21102.293422 eV Core-core repulsion = 17918.851640 eV Total energy + Delta-G solvation = -3183.441782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46360 -40.32512 -38.16644 -37.92128 -34.96068 -32.90758 -32.08808 -31.27263 -27.52776 -27.52162 -26.95003 -24.68868 -23.75903 -23.11499 -21.27674 -21.05413 -20.52102 -19.20952 -17.83387 -17.22581 -16.83678 -16.61062 -16.37373 -16.21162 -15.64784 -15.05838 -14.91247 -14.73489 -14.35221 -14.03006 -13.93803 -13.68334 -13.16203 -13.06242 -12.64790 -12.60752 -12.51677 -12.38287 -12.21724 -12.10442 -11.96191 -11.58077 -11.44944 -11.22497 -10.86701 -10.66401 -10.53298 -10.37032 -10.01797 -9.58677 -7.99609 -6.15338 0.47835 1.12120 1.23232 1.45998 1.46914 1.53628 2.37281 2.48513 2.51415 2.63979 3.23891 3.45914 3.57852 3.75098 3.85402 3.91385 4.10755 4.40342 4.45437 4.55965 4.64915 4.68246 4.75171 4.78179 4.92141 5.04584 5.07773 5.09681 5.15470 5.23505 5.35979 5.41522 5.64176 5.69877 5.70650 5.85859 6.18472 6.24823 6.46306 6.46523 6.76198 6.88844 7.37874 7.52188 8.99183 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046472 B = 0.003260 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.364721 B = 8585.640784 C = 8915.338912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.706 5.706 14 C 0.586 3.414 15 O -0.600 6.600 16 C -0.310 4.310 17 C 0.083 3.917 18 N -0.313 5.313 19 N -0.332 5.332 20 C 0.048 3.952 21 C -0.151 4.151 22 C -0.169 4.169 23 C 0.131 3.869 24 H 0.037 0.963 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.407 0.593 34 H 0.210 0.790 35 H 0.156 0.844 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 1.653 22.701 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.356 5.356 14 C 0.375 3.625 15 O -0.483 6.483 16 C -0.325 4.325 17 C -0.104 4.104 18 N -0.132 5.132 19 N -0.109 5.109 20 C -0.053 4.053 21 C -0.189 4.189 22 C -0.207 4.207 23 C -0.021 4.021 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.244 0.756 34 H 0.226 0.774 35 H 0.173 0.827 36 H 0.123 0.877 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.106 0.894 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.109 1.940 23.552 23.725 hybrid contribution 0.501 -0.732 -1.983 2.172 sum -1.608 1.208 21.569 21.663 Atomic orbital electron populations 1.21681 0.97129 0.98686 1.00428 1.18343 0.93242 0.93018 0.90238 1.21679 0.97947 0.97881 1.00434 1.21270 1.31768 1.12223 0.91602 0.93649 1.25450 0.95150 0.95596 1.00944 1.69905 1.36962 1.23306 1.23637 0.85823 0.78626 0.78813 0.79577 1.20261 1.20849 1.20255 1.21280 0.97060 0.95076 0.83990 1.45873 1.52817 1.31928 1.04965 1.17625 0.78976 0.82815 0.83061 1.90700 1.41333 1.28696 1.87593 1.20209 1.14659 1.04446 0.93179 1.24442 0.95480 0.94563 0.95900 1.77147 1.19898 1.14244 1.01905 1.48130 1.36479 1.19785 1.06469 1.22306 1.09907 1.00073 0.73053 1.23635 0.97776 0.94658 1.02871 1.23548 0.92923 1.01315 1.02902 1.23126 0.94615 0.94850 0.89539 0.94404 0.91840 0.96330 0.96318 0.91842 0.94394 0.93041 0.94244 0.94250 0.75602 0.77351 0.82670 0.87723 0.83684 0.84686 0.89382 0.78047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.08 71.98 0.58 -4.87 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.47 8.08 71.98 0.58 -4.88 16 4 C -0.53 -28.32 8.01 25.60 0.21 -28.12 16 5 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.50 5.15 84.65 0.44 1.94 16 7 N -0.90 -48.31 9.35 21.45 0.20 -48.11 16 8 Si 0.94 42.89 29.54 68.60 2.03 44.91 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.52 4.50 86.38 0.39 6.91 16 13 N -0.71 -25.58 4.95 -466.35 -2.31 -27.89 16 14 C 0.59 21.36 7.81 86.67 0.68 22.04 16 15 O -0.60 -25.97 16.90 -4.05 -0.07 -26.04 16 16 C -0.31 -9.03 6.13 -20.15 -0.12 -9.15 16 17 C 0.08 2.14 11.50 85.65 0.99 3.12 16 18 N -0.31 -8.08 12.50 -56.28 -0.70 -8.78 16 19 N -0.33 -7.19 3.91 -325.75 -1.27 -8.46 16 20 C 0.05 0.63 7.12 44.99 0.32 0.95 16 21 C -0.15 -1.15 9.97 30.59 0.31 -0.84 16 22 C -0.17 -1.63 10.46 30.59 0.32 -1.31 16 23 C 0.13 3.16 10.62 84.28 0.90 4.05 16 24 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 25 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 29 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 30 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 31 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 12.85 5.12 -92.71 -0.47 12.37 16 34 H 0.21 4.25 7.50 -2.91 -0.02 4.23 16 35 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 0.90 6.98 -2.38 -0.02 0.89 16 37 H 0.15 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.20 3.96 7.20 -2.91 -0.02 3.94 16 Total: -1.00 -66.89 330.26 4.00 -62.90 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.58 Total: 19.20 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.55 Total: -7.74 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -4.08 Total: -93.23 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.07 Total: -26.04 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -66.89 4.00 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.339 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds