Wall clock time and date at job start Mon Mar 30 2020 02:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21602 * 120.00339 * 359.97438 * 14 13 3 16 16 C 1.47405 * 119.99909 * 179.97438 * 14 13 3 17 17 N 1.31875 * 125.93972 * 359.68621 * 16 14 13 18 18 C 1.33367 * 109.15918 * 179.85985 * 17 16 14 19 19 C 1.34878 * 108.15796 * 0.36327 * 18 17 16 20 20 N 1.35679 * 107.36870 * 359.82555 * 19 18 17 21 21 C 1.46439 * 124.57394 * 179.88087 * 20 19 18 22 22 C 1.53282 * 108.75659 * 342.82425 * 21 20 19 23 23 C 1.53142 * 109.61228 * 50.49663 * 22 21 20 24 24 C 1.50759 * 128.32278 * 179.90178 * 19 18 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.08000 * 125.92502 * 180.10555 * 18 17 16 33 33 H 1.09001 * 109.59015 * 102.60904 * 21 20 19 34 34 H 1.08999 * 109.59218 * 223.04204 * 21 20 19 35 35 H 1.09000 * 109.44507 * 290.45366 * 22 21 20 36 36 H 1.09007 * 109.44917 * 170.54498 * 22 21 20 37 37 H 1.09004 * 109.51008 * 170.59313 * 23 22 21 38 38 H 1.09002 * 109.50852 * 50.46076 * 23 22 21 39 39 H 1.09004 * 109.72772 * 283.81494 * 24 19 18 40 40 H 1.08990 * 109.73535 * 44.50041 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0453 3.3240 -2.6262 17 7 0.7934 3.4326 -3.7068 18 6 0.1110 4.0870 -4.6475 19 6 -1.0984 4.4070 -4.1435 20 7 -1.1467 3.9318 -2.8736 21 6 -2.2948 4.0747 -1.9759 22 6 -3.2112 5.1767 -2.5195 23 6 -3.5038 4.9179 -4.0002 24 6 -2.2249 5.1493 -4.8165 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.4669 4.3237 -5.6394 33 1 -2.8424 3.1334 -1.9302 34 1 -1.9477 4.3468 -0.9791 35 1 -2.7203 6.1437 -2.4101 36 1 -4.1466 5.1797 -1.9598 37 1 -4.2823 5.6000 -4.3421 38 1 -3.8378 3.8886 -4.1309 39 1 -1.9964 6.2146 -4.8483 40 1 -2.3614 4.7712 -5.8295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601444675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:07 Heat of formation + Delta-G solvation = 6.831840 kcal Electronic energy + Delta-G solvation = -21945.220241 eV Core-core repulsion = 18760.190901 eV Total energy + Delta-G solvation = -3185.029340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.33631 -38.74182 -36.77320 -35.10367 -32.92285 -32.37287 -31.13577 -30.40308 -28.17714 -26.80106 -24.55791 -23.47538 -22.56938 -21.86145 -20.34090 -19.29943 -19.02270 -17.73322 -16.19691 -16.12040 -15.53484 -15.10907 -14.77286 -14.34180 -14.26828 -14.23031 -13.95584 -13.72527 -13.33179 -13.01704 -12.66884 -12.24269 -11.89538 -11.50425 -11.34341 -11.29070 -11.24742 -11.18645 -10.93714 -10.82372 -10.29924 -10.18182 -9.95364 -9.64340 -9.52796 -9.31182 -9.02449 -8.48709 -8.26115 -7.79950 -6.10380 -4.18890 1.71641 2.68886 2.87848 3.27158 3.35036 3.39308 3.98387 4.02865 4.31003 4.38819 4.42538 4.50328 4.64190 4.96209 5.10975 5.18980 5.21522 5.29052 5.44824 5.45552 5.55606 5.60725 5.68262 5.76495 5.88612 6.38957 6.45094 6.45707 6.64875 6.75856 7.04844 7.13140 7.17412 7.34099 7.40549 7.62475 7.73624 7.88772 8.07180 8.17829 8.67276 8.77866 9.06845 9.47891 10.95238 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.004339 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.682058 B = 6451.963062 C = 6940.662019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.677 5.677 14 C 0.589 3.411 15 O -0.551 6.551 16 C 0.160 3.840 17 N -0.451 5.451 18 C -0.026 4.026 19 C -0.017 4.017 20 N -0.412 5.412 21 C 0.104 3.896 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.044 4.044 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.036 0.964 28 H 0.101 0.899 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.172 0.828 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 8.495 -12.050 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.730 3.270 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.324 5.324 14 C 0.371 3.629 15 O -0.430 6.430 16 C -0.100 4.100 17 N -0.172 5.172 18 C -0.179 4.179 19 C -0.136 4.136 20 N -0.093 5.093 21 C -0.018 4.018 22 C -0.173 4.173 23 C -0.164 4.164 24 C -0.083 4.083 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.190 0.810 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.584 8.016 -11.044 18.563 hybrid contribution 0.482 0.262 -0.224 0.593 sum -12.102 8.278 -11.269 18.492 Atomic orbital electron populations 1.21838 0.98442 0.98107 1.01039 1.21948 0.92565 0.99639 1.02549 1.18911 0.94542 0.89230 0.80399 0.93060 1.21282 0.90526 1.38872 1.06376 0.91754 1.24871 0.98706 0.94742 0.95313 1.69904 1.35055 1.37803 1.09352 0.86376 0.84765 0.77766 0.78138 1.19616 1.20917 1.20870 1.46293 1.13536 1.53586 1.18998 1.16509 0.83699 0.79194 0.83479 1.90764 1.51916 1.61351 1.39008 1.23133 0.83980 1.05161 0.97765 1.70437 1.30325 1.17144 0.99325 1.21945 0.91422 1.04343 1.00157 1.21229 0.99728 1.06224 0.86408 1.44988 1.13278 1.39571 1.11491 1.22126 0.85080 1.00535 0.94042 1.21950 0.99997 0.98639 0.96756 1.21681 0.97485 1.02720 0.94549 1.20239 0.90220 0.99322 0.98471 0.93099 0.95752 0.94530 0.88042 0.94777 0.92639 0.76500 0.81039 0.89369 0.87564 0.90784 0.89359 0.90511 0.91286 0.89913 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.95 2.24 -69.08 -0.15 6.79 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -15.30 5.02 -56.01 -0.28 -15.58 16 14 C 0.59 12.69 6.38 -12.53 -0.08 12.61 16 15 O -0.55 -12.64 12.38 5.28 0.07 -12.57 16 16 C 0.16 3.02 7.82 -154.86 -1.21 1.81 16 17 N -0.45 -8.18 10.92 -11.45 -0.12 -8.30 16 18 C -0.03 -0.37 11.82 -18.08 -0.21 -0.59 16 19 C -0.02 -0.22 6.57 -82.05 -0.54 -0.76 16 20 N -0.41 -6.34 3.14 -110.08 -0.35 -6.68 16 21 C 0.10 1.32 6.10 -3.93 -0.02 1.29 16 22 C -0.14 -1.16 5.93 -26.51 -0.16 -1.32 16 23 C -0.13 -0.94 5.96 -26.42 -0.16 -1.10 16 24 C -0.04 -0.37 6.31 -27.61 -0.17 -0.54 16 25 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 28 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.40 8.62 8.23 -40.82 -0.34 8.28 16 32 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 1.51 7.28 -51.93 -0.38 1.13 16 35 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -30.75 320.56 -9.07 -39.82 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.88 Total: 7.58 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.93 Total: -0.84 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.13 Total: -54.70 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.75 -9.07 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601444675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.652 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds