Wall clock time and date at job start Mon Mar 30 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21602 * 120.00339 * 359.97438 * 14 13 3 16 16 C 1.47405 * 119.99909 * 179.97438 * 14 13 3 17 17 N 1.31875 * 125.93972 * 359.68621 * 16 14 13 18 18 C 1.33367 * 109.15918 * 179.85985 * 17 16 14 19 19 C 1.34878 * 108.15796 * 0.36327 * 18 17 16 20 20 N 1.35679 * 107.36870 * 359.82555 * 19 18 17 21 21 C 1.46439 * 124.57394 * 179.88087 * 20 19 18 22 22 C 1.53282 * 108.75659 * 342.82425 * 21 20 19 23 23 C 1.53142 * 109.61228 * 50.49663 * 22 21 20 24 24 C 1.50759 * 128.32278 * 179.90178 * 19 18 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.08000 * 125.92502 * 180.10555 * 18 17 16 33 33 H 1.09001 * 109.59015 * 102.60904 * 21 20 19 34 34 H 1.08999 * 109.59218 * 223.04204 * 21 20 19 35 35 H 1.09000 * 109.44507 * 290.45366 * 22 21 20 36 36 H 1.09007 * 109.44917 * 170.54498 * 22 21 20 37 37 H 1.09004 * 109.51008 * 170.59313 * 23 22 21 38 38 H 1.09002 * 109.50852 * 50.46076 * 23 22 21 39 39 H 1.09004 * 109.72772 * 283.81494 * 24 19 18 40 40 H 1.08990 * 109.73535 * 44.50041 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0453 3.3240 -2.6262 17 7 0.7934 3.4326 -3.7068 18 6 0.1110 4.0870 -4.6475 19 6 -1.0984 4.4070 -4.1435 20 7 -1.1467 3.9318 -2.8736 21 6 -2.2948 4.0747 -1.9759 22 6 -3.2112 5.1767 -2.5195 23 6 -3.5038 4.9179 -4.0002 24 6 -2.2249 5.1493 -4.8165 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.4669 4.3237 -5.6394 33 1 -2.8424 3.1334 -1.9302 34 1 -1.9477 4.3468 -0.9791 35 1 -2.7203 6.1437 -2.4101 36 1 -4.1466 5.1797 -1.9598 37 1 -4.2823 5.6000 -4.3421 38 1 -3.8378 3.8886 -4.1309 39 1 -1.9964 6.2146 -4.8483 40 1 -2.3614 4.7712 -5.8295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601444675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:06 Heat of formation + Delta-G solvation = -12.571868 kcal Electronic energy + Delta-G solvation = -21946.061649 eV Core-core repulsion = 18760.190901 eV Total energy + Delta-G solvation = -3185.870748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.51700 -40.48073 -37.67551 -37.01155 -34.38607 -33.85291 -32.95892 -31.55955 -29.57406 -28.51977 -25.67146 -25.03488 -24.13520 -22.84533 -21.97642 -21.11999 -20.03436 -19.29303 -17.91900 -17.44185 -17.13623 -16.83681 -16.14740 -15.98471 -15.27766 -15.03346 -14.95665 -14.89097 -14.73924 -14.60030 -14.19630 -13.87639 -13.52667 -13.21183 -12.97830 -12.90924 -12.71313 -12.21141 -12.10642 -12.04435 -11.93448 -11.86982 -11.63129 -11.20081 -11.08291 -11.01560 -10.71828 -10.56408 -9.80557 -9.30040 -8.18496 -6.35383 0.39081 1.43421 1.44006 1.50180 1.58015 1.64754 2.36268 2.45557 2.59159 3.10977 3.42483 3.55229 3.67723 3.77888 3.88263 4.22473 4.27466 4.37580 4.45630 4.52206 4.54191 4.65837 4.70213 4.83684 4.88136 4.98739 5.01964 5.10750 5.19744 5.28634 5.38052 5.38533 5.47079 5.57021 5.65409 5.74893 5.85110 5.95725 6.11666 6.67487 6.69621 6.97965 7.25039 7.40854 8.87363 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.004339 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.682058 B = 6451.963062 C = 6940.662019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.007 0.993 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.589 3.411 15 O -0.575 6.575 16 C 0.109 3.891 17 N -0.468 5.468 18 C -0.044 4.044 19 C 0.009 3.991 20 N -0.410 5.410 21 C 0.096 3.904 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.044 4.044 25 H 0.033 0.967 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.267 0.733 31 H 0.405 0.595 32 H 0.206 0.794 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.825 9.800 -14.519 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.025 0.975 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.330 5.330 14 C 0.374 3.626 15 O -0.456 6.456 16 C -0.149 4.149 17 N -0.191 5.191 18 C -0.197 4.197 19 C -0.112 4.112 20 N -0.091 5.091 21 C -0.025 4.025 22 C -0.165 4.165 23 C -0.161 4.161 24 C -0.082 4.082 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.240 0.760 32 H 0.222 0.778 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.649 9.321 -13.512 21.348 hybrid contribution 0.707 -0.059 0.464 0.848 sum -12.942 9.262 -13.048 20.580 Atomic orbital electron populations 1.21660 0.96814 0.99336 1.00091 1.21796 0.93940 0.98798 1.01462 1.18525 0.93977 0.89334 0.80409 0.97494 1.21559 0.91245 1.39323 1.06865 0.91600 1.25719 1.03405 0.94124 0.94792 1.70032 1.36990 1.38166 1.09790 0.85308 0.78965 0.77992 0.78152 1.18934 1.20629 1.20102 1.46064 1.14420 1.54390 1.18078 1.16807 0.82837 0.78497 0.84453 1.90730 1.52366 1.62143 1.40319 1.22370 0.86346 1.08914 0.97231 1.70340 1.31372 1.17523 0.99846 1.22635 0.91901 1.04215 1.00951 1.22153 1.00491 1.03563 0.84994 1.45210 1.12699 1.38564 1.12673 1.22319 0.84921 1.02179 0.93123 1.21984 0.99748 0.96648 0.98131 1.21718 0.97866 1.03410 0.93093 1.20558 0.88484 0.99910 0.99260 0.94823 0.93279 0.94616 0.90290 0.94395 0.92398 0.76012 0.77752 0.89668 0.90065 0.90587 0.87068 0.87157 0.91760 0.87677 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.21 5.45 30.59 0.17 -6.05 16 3 C 0.28 15.14 2.24 44.24 0.10 15.24 16 4 H 0.01 0.45 7.58 -2.38 -0.02 0.43 16 5 C -0.55 -30.73 8.73 25.60 0.22 -30.51 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 7 C 0.02 1.10 5.29 84.66 0.45 1.55 16 8 N -0.91 -52.56 11.29 21.45 0.24 -52.32 16 9 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 N -0.68 -32.40 5.02 -449.39 -2.26 -34.65 16 14 C 0.59 26.72 6.38 86.66 0.55 27.27 16 15 O -0.57 -27.98 12.38 -4.04 -0.05 -28.03 16 16 C 0.11 4.20 7.82 136.39 1.07 5.27 16 17 N -0.47 -16.97 10.92 -190.12 -2.08 -19.05 16 18 C -0.04 -1.19 11.82 83.69 0.99 -0.20 16 19 C 0.01 0.21 6.57 41.21 0.27 0.48 16 20 N -0.41 -12.42 3.14 -502.17 -1.58 -14.00 16 21 C 0.10 2.40 6.10 86.49 0.53 2.93 16 22 C -0.13 -1.84 5.93 30.74 0.18 -1.65 16 23 C -0.12 -1.30 5.96 30.80 0.18 -1.11 16 24 C -0.04 -0.53 6.31 30.02 0.19 -0.34 16 25 H 0.03 1.64 7.84 -2.39 -0.02 1.62 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.03 1.63 5.64 -2.38 -0.01 1.62 16 28 H 0.08 4.43 5.95 -2.39 -0.01 4.42 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.40 18.24 8.23 -92.71 -0.76 17.48 16 32 H 0.21 3.86 8.06 -2.91 -0.02 3.83 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.43 7.28 -2.39 -0.02 2.41 16 35 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -70.33 320.56 2.11 -68.23 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.29 Total: 26.62 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.51 Total: 7.85 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -5.66 Total: -120.02 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.33 2.11 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601444675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.654 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds