Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 H 1.09002 * 109.46962 * 304.90234 * 3 2 1 5 5 C 1.50706 * 109.46946 * 184.90245 * 3 2 1 6 6 H 1.08004 * 119.99624 * 245.44789 * 5 3 2 7 7 C 1.37875 * 120.00096 * 65.45518 * 5 3 2 8 8 N 1.31519 * 120.00035 * 9.46474 * 7 5 3 9 9 Si 1.86802 * 119.99943 * 189.46896 * 7 5 3 10 10 H 1.48497 * 109.46983 * 84.99111 * 9 7 5 11 11 H 1.48491 * 109.46918 * 204.99391 * 9 7 5 12 12 H 1.48496 * 109.46906 * 324.99049 * 9 7 5 13 13 N 1.46506 * 109.47097 * 64.90218 * 3 2 1 14 14 C 1.34773 * 119.99789 * 275.00039 * 13 3 2 15 15 O 1.21607 * 120.00122 * 359.97438 * 14 13 3 16 16 C 1.47431 * 119.99980 * 179.97438 * 14 13 3 17 17 C 1.41294 * 126.41081 * 0.02718 * 16 14 13 18 18 N 1.30446 * 108.02144 * 179.97438 * 17 16 14 19 19 N 1.39935 * 108.89560 * 0.02562 * 18 17 16 20 20 C 1.46506 * 125.75176 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.46969 * 305.01527 * 20 19 18 22 22 C 1.52997 * 117.50196 * 243.75070 * 21 20 19 23 23 C 1.52999 * 117.49749 * 175.08968 * 21 20 19 24 24 C 1.34257 * 108.49660 * 0.25626 * 19 18 17 25 25 H 1.09001 * 109.47041 * 299.99944 * 1 2 3 26 26 H 1.08992 * 109.47414 * 59.99852 * 1 2 3 27 27 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47041 * 240.00056 * 2 1 3 29 29 H 1.09005 * 109.47270 * 120.00151 * 2 1 3 30 30 H 0.96995 * 120.00056 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99529 * 94.99676 * 13 3 2 32 32 H 1.07998 * 125.98948 * 359.95934 * 17 16 14 33 33 H 1.09000 * 109.47340 * 65.01917 * 20 19 18 34 34 H 1.09004 * 109.47064 * 185.01867 * 20 19 18 35 35 H 1.09006 * 115.55269 * 29.42065 * 21 20 19 36 36 H 1.08999 * 117.50051 * 359.97438 * 22 21 20 37 37 H 1.09000 * 117.50238 * 145.02799 * 22 21 20 38 38 H 1.09012 * 117.49993 * 214.98323 * 23 21 20 39 39 H 1.09002 * 117.50117 * 359.97438 * 23 21 20 40 40 H 1.07994 * 126.29661 * 179.74339 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9810 -0.8428 5 6 3.5421 1.4441 -0.1214 6 1 4.1494 1.8090 0.6938 7 6 4.1412 0.9800 -1.2733 8 7 3.4096 0.7114 -2.3327 9 14 5.9919 0.7327 -1.3290 10 1 6.3289 -0.6068 -0.7836 11 1 6.4618 0.8274 -2.7345 12 1 6.6562 1.7808 -0.5134 13 7 1.6504 2.0982 1.2509 14 6 0.4329 2.6651 1.3637 15 8 -0.3420 2.6328 0.4271 16 6 0.0406 3.3245 2.6226 17 6 0.8291 3.4413 3.7893 18 7 0.1338 4.0889 4.6831 19 7 -1.1145 4.4121 4.1393 20 6 -2.1846 5.1401 4.8257 21 6 -2.5212 4.4325 6.1398 22 6 -3.9257 3.8434 6.2854 23 6 -3.5398 5.1042 7.0630 24 6 -1.1680 3.9381 2.8843 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8311 0.3853 -3.1431 31 1 2.2687 2.1242 1.9978 32 1 1.8315 3.0610 3.9185 33 1 -1.8554 6.1579 5.0350 34 1 -3.0703 5.1680 4.1909 35 1 -1.6979 3.8922 6.6072 36 1 -4.6101 3.9602 5.4452 37 1 -4.0265 2.9158 6.8489 38 1 -3.3868 5.0055 8.1378 39 1 -3.9698 6.0503 6.7344 40 1 -2.0020 4.0238 2.2036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601445602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 55.509875 kcal Electronic energy + Delta-G solvation = -21038.750566 eV Core-core repulsion = 17855.832065 eV Total energy + Delta-G solvation = -3182.918502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20340 -38.55284 -37.77311 -34.89083 -33.08054 -32.16573 -30.99387 -29.95134 -27.59331 -26.56277 -23.25976 -22.80691 -22.27284 -21.78186 -20.42033 -19.87495 -19.11560 -17.93691 -16.58781 -15.88689 -15.38572 -15.25921 -15.01088 -14.51697 -14.37194 -14.17191 -13.84249 -13.29402 -12.90722 -12.71712 -12.49663 -12.11214 -11.94196 -11.86236 -11.39598 -11.28939 -10.99958 -10.87779 -10.83879 -10.72001 -10.46681 -10.28104 -10.13302 -9.61988 -9.47971 -9.03782 -8.91511 -8.46902 -8.41723 -7.69691 -6.09226 -4.13983 1.76215 2.32561 2.46967 3.28993 3.35663 3.36568 3.37246 4.02396 4.20394 4.28916 4.41274 4.49847 4.52449 4.68967 4.86499 4.96179 5.08796 5.15024 5.22843 5.23914 5.47508 5.56125 5.62294 5.68907 5.83172 6.08586 6.41790 6.47525 6.56850 6.68156 6.90366 7.07708 7.24736 7.40749 7.52685 7.64419 7.70263 7.80487 7.93580 8.14951 8.80869 8.87844 9.28501 9.52594 10.99083 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.003440 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.167528 B = 8137.344789 C = 8568.824227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.270 3.730 4 H 0.056 0.944 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.578 3.422 15 O -0.559 6.559 16 C -0.277 4.277 17 C 0.079 3.921 18 N -0.302 5.302 19 N -0.365 5.365 20 C 0.165 3.835 21 C -0.169 4.169 22 C -0.178 4.178 23 C -0.171 4.171 24 C 0.115 3.885 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.021 0.979 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.189 0.811 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 7.107 15.824 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.074 0.926 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.364 3.636 15 O -0.439 6.439 16 C -0.292 4.292 17 C -0.108 4.108 18 N -0.122 5.122 19 N -0.144 5.144 20 C 0.043 3.957 21 C -0.188 4.188 22 C -0.215 4.215 23 C -0.208 4.208 24 C -0.035 4.035 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.218 0.782 32 H 0.206 0.794 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.301 7.554 16.180 21.683 hybrid contribution 1.333 -0.544 -0.525 1.533 sum -10.968 7.010 15.655 20.359 Atomic orbital electron populations 1.21840 0.98062 0.98015 1.01608 1.21848 0.92996 0.99943 1.01069 1.18772 0.94209 0.88840 0.81353 0.92580 1.21198 0.90678 1.43766 1.01743 0.92084 1.24880 0.98352 0.95238 0.95017 1.69988 1.35675 1.43937 1.02124 0.86549 0.85178 0.78698 0.77202 1.20464 1.21248 1.19911 1.46265 1.14413 1.55989 1.18361 1.17191 0.82626 0.78315 0.85452 1.90730 1.51995 1.61192 1.40012 1.20677 0.96270 1.14196 0.98022 1.24112 0.99818 0.96350 0.90538 1.77060 0.91596 1.20829 1.22724 1.48378 1.12434 1.43387 1.10236 1.21307 0.87287 0.94688 0.92372 1.22573 0.94435 1.04475 0.97310 1.23126 0.97267 0.97813 1.03279 1.22984 1.02489 0.97111 0.98228 1.22925 0.99268 0.94529 0.86771 0.93868 0.92994 0.95951 0.90339 0.94743 0.92624 0.78168 0.79417 0.89116 0.88365 0.86314 0.88446 0.88518 0.88344 0.88426 0.79895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.12 -2.89 5.50 -26.73 -0.15 -3.04 16 3 C 0.27 6.83 2.11 -69.08 -0.15 6.68 16 4 H 0.06 1.66 7.52 -51.93 -0.39 1.27 16 5 C -0.54 -14.20 8.66 -34.44 -0.30 -14.50 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -25.05 12.16 55.43 0.67 -24.38 16 9 Si 0.90 20.72 29.55 -169.99 -5.02 15.69 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -14.83 5.01 -56.00 -0.28 -15.11 16 14 C 0.58 11.86 6.38 -12.52 -0.08 11.79 16 15 O -0.56 -13.20 14.03 5.27 0.07 -13.12 16 16 C -0.28 -4.57 6.13 -105.06 -0.64 -5.21 16 17 C 0.08 1.15 11.50 -16.98 -0.20 0.96 16 18 N -0.30 -4.29 12.14 30.86 0.37 -3.92 16 19 N -0.36 -4.51 3.65 -60.81 -0.22 -4.73 16 20 C 0.16 1.37 6.77 -4.04 -0.03 1.35 16 21 C -0.17 -1.38 5.92 -90.62 -0.54 -1.91 16 22 C -0.18 -1.22 10.18 -26.70 -0.27 -1.49 16 23 C -0.17 -1.03 10.25 -26.69 -0.27 -1.31 16 24 C 0.12 1.60 11.25 -16.56 -0.19 1.41 16 25 H 0.04 0.95 5.65 -51.93 -0.29 0.66 16 26 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 2.08 6.80 -51.93 -0.35 1.73 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 7.07 7.48 -40.82 -0.31 6.77 16 32 H 0.19 2.25 7.50 -52.49 -0.39 1.86 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.59 7.79 -51.93 -0.40 0.19 16 35 H 0.12 1.21 7.90 -51.93 -0.41 0.80 16 36 H 0.10 0.58 8.03 -51.93 -0.42 0.17 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.18 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -32.04 335.65 -7.80 -39.84 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.88 Total: 6.95 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.58 Total: -6.28 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.55 Total: -48.14 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.04 -7.80 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.350 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds