Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 H 1.09002 * 109.46962 * 304.90234 * 3 2 1 5 5 C 1.50706 * 109.46946 * 184.90245 * 3 2 1 6 6 H 1.08004 * 119.99624 * 245.44789 * 5 3 2 7 7 C 1.37875 * 120.00096 * 65.45518 * 5 3 2 8 8 N 1.31519 * 120.00035 * 9.46474 * 7 5 3 9 9 Si 1.86802 * 119.99943 * 189.46896 * 7 5 3 10 10 H 1.48497 * 109.46983 * 84.99111 * 9 7 5 11 11 H 1.48491 * 109.46918 * 204.99391 * 9 7 5 12 12 H 1.48496 * 109.46906 * 324.99049 * 9 7 5 13 13 N 1.46506 * 109.47097 * 64.90218 * 3 2 1 14 14 C 1.34773 * 119.99789 * 275.00039 * 13 3 2 15 15 O 1.21607 * 120.00122 * 359.97438 * 14 13 3 16 16 C 1.47431 * 119.99980 * 179.97438 * 14 13 3 17 17 C 1.41294 * 126.41081 * 0.02718 * 16 14 13 18 18 N 1.30446 * 108.02144 * 179.97438 * 17 16 14 19 19 N 1.39935 * 108.89560 * 0.02562 * 18 17 16 20 20 C 1.46506 * 125.75176 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.46969 * 305.01527 * 20 19 18 22 22 C 1.52997 * 117.50196 * 243.75070 * 21 20 19 23 23 C 1.52999 * 117.49749 * 175.08968 * 21 20 19 24 24 C 1.34257 * 108.49660 * 0.25626 * 19 18 17 25 25 H 1.09001 * 109.47041 * 299.99944 * 1 2 3 26 26 H 1.08992 * 109.47414 * 59.99852 * 1 2 3 27 27 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47041 * 240.00056 * 2 1 3 29 29 H 1.09005 * 109.47270 * 120.00151 * 2 1 3 30 30 H 0.96995 * 120.00056 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99529 * 94.99676 * 13 3 2 32 32 H 1.07998 * 125.98948 * 359.95934 * 17 16 14 33 33 H 1.09000 * 109.47340 * 65.01917 * 20 19 18 34 34 H 1.09004 * 109.47064 * 185.01867 * 20 19 18 35 35 H 1.09006 * 115.55269 * 29.42065 * 21 20 19 36 36 H 1.08999 * 117.50051 * 359.97438 * 22 21 20 37 37 H 1.09000 * 117.50238 * 145.02799 * 22 21 20 38 38 H 1.09012 * 117.49993 * 214.98323 * 23 21 20 39 39 H 1.09002 * 117.50117 * 359.97438 * 23 21 20 40 40 H 1.07994 * 126.29661 * 179.74339 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9810 -0.8428 5 6 3.5421 1.4441 -0.1214 6 1 4.1494 1.8090 0.6938 7 6 4.1412 0.9800 -1.2733 8 7 3.4096 0.7114 -2.3327 9 14 5.9919 0.7327 -1.3290 10 1 6.3289 -0.6068 -0.7836 11 1 6.4618 0.8274 -2.7345 12 1 6.6562 1.7808 -0.5134 13 7 1.6504 2.0982 1.2509 14 6 0.4329 2.6651 1.3637 15 8 -0.3420 2.6328 0.4271 16 6 0.0406 3.3245 2.6226 17 6 0.8291 3.4413 3.7893 18 7 0.1338 4.0889 4.6831 19 7 -1.1145 4.4121 4.1393 20 6 -2.1846 5.1401 4.8257 21 6 -2.5212 4.4325 6.1398 22 6 -3.9257 3.8434 6.2854 23 6 -3.5398 5.1042 7.0630 24 6 -1.1680 3.9381 2.8843 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8311 0.3853 -3.1431 31 1 2.2687 2.1242 1.9978 32 1 1.8315 3.0610 3.9185 33 1 -1.8554 6.1579 5.0350 34 1 -3.0703 5.1680 4.1909 35 1 -1.6979 3.8922 6.6072 36 1 -4.6101 3.9602 5.4452 37 1 -4.0265 2.9158 6.8489 38 1 -3.3868 5.0055 8.1378 39 1 -3.9698 6.0503 6.7344 40 1 -2.0020 4.0238 2.2036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601445602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 35.281267 kcal Electronic energy + Delta-G solvation = -21039.627744 eV Core-core repulsion = 17855.832065 eV Total energy + Delta-G solvation = -3183.795680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31453 -40.17498 -38.41461 -36.77908 -34.35463 -33.85125 -32.74873 -31.17087 -29.10076 -27.93150 -25.10495 -23.73075 -23.28596 -22.71364 -21.56193 -21.36878 -20.67329 -19.28614 -18.10997 -17.13522 -16.93358 -16.57059 -16.19921 -15.92582 -15.83484 -15.32548 -14.77354 -14.70946 -14.53366 -13.98861 -13.73753 -13.61042 -13.35502 -13.23476 -12.88403 -12.72326 -12.57948 -12.39600 -12.17221 -12.04315 -11.95682 -11.56835 -11.41779 -11.05142 -11.03730 -10.60293 -10.49605 -10.47083 -9.76295 -9.41009 -8.15478 -6.27852 0.62368 1.24569 1.40740 1.46992 1.48094 1.57416 2.41119 2.69641 2.79514 2.85360 3.16291 3.38142 3.81483 3.84795 3.95978 4.01833 4.19453 4.24914 4.33003 4.52028 4.52496 4.58612 4.67234 4.74463 4.78016 4.86825 4.99705 5.12193 5.19322 5.23189 5.28568 5.45189 5.48073 5.59540 5.68120 5.81045 5.92484 6.01084 6.13096 6.55965 6.81379 7.12756 7.38421 7.70141 8.93375 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.003440 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.167528 B = 8137.344789 C = 8568.824227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.279 3.721 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.579 3.421 15 O -0.597 6.597 16 C -0.309 4.309 17 C 0.082 3.918 18 N -0.314 5.314 19 N -0.353 5.353 20 C 0.156 3.844 21 C -0.185 4.185 22 C -0.180 4.180 23 C -0.154 4.154 24 C 0.129 3.871 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.207 0.793 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 7.846 17.878 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.350 5.350 14 C 0.367 3.633 15 O -0.480 6.480 16 C -0.324 4.324 17 C -0.105 4.105 18 N -0.134 5.134 19 N -0.131 5.131 20 C 0.036 3.964 21 C -0.204 4.204 22 C -0.216 4.216 23 C -0.191 4.191 24 C -0.023 4.023 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.235 0.765 32 H 0.223 0.777 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.647 8.318 18.310 23.757 hybrid contribution 1.323 -0.695 -1.091 1.850 sum -11.324 7.623 17.219 21.974 Atomic orbital electron populations 1.21671 0.96681 0.99219 1.00520 1.21704 0.94148 0.99077 1.00243 1.18356 0.93614 0.88993 0.81519 0.97838 1.21564 0.91446 1.43534 1.02116 0.90999 1.25756 1.03068 0.94874 0.94589 1.70136 1.37715 1.44913 1.02748 0.85452 0.79395 0.79014 0.77054 1.19602 1.21451 1.18837 1.46018 1.15303 1.56184 1.17472 1.17669 0.81710 0.77527 0.86359 1.90703 1.52921 1.62621 1.41789 1.20354 0.98286 1.16725 0.97040 1.24367 1.00521 0.96024 0.89629 1.77049 0.92442 1.20991 1.22904 1.48717 1.12496 1.42181 1.09736 1.21749 0.87120 0.94736 0.92751 1.22430 0.94400 1.05775 0.97792 1.23216 0.96376 0.98193 1.03858 1.23086 1.00401 0.97511 0.98130 1.23208 0.98818 0.92880 0.87411 0.93563 0.95400 0.93460 0.93042 0.93415 0.92678 0.76490 0.77665 0.87768 0.85538 0.88792 0.87266 0.88963 0.88013 0.86591 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.11 -5.55 5.50 30.59 0.17 -5.39 16 3 C 0.28 14.50 2.11 44.25 0.09 14.59 16 4 H 0.00 0.23 7.52 -2.39 -0.02 0.21 16 5 C -0.55 -29.35 8.66 25.60 0.22 -29.13 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.95 5.16 84.65 0.44 1.39 16 8 N -0.92 -53.65 12.16 21.45 0.26 -53.39 16 9 Si 0.97 42.50 29.55 68.60 2.03 44.53 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.70 -29.92 5.01 -449.35 -2.25 -32.17 16 14 C 0.58 24.01 6.38 86.67 0.55 24.56 16 15 O -0.60 -28.97 14.03 -4.05 -0.06 -29.03 16 16 C -0.31 -9.97 6.13 -20.15 -0.12 -10.10 16 17 C 0.08 2.27 11.50 85.65 0.99 3.26 16 18 N -0.31 -8.44 12.14 -56.27 -0.68 -9.12 16 19 N -0.35 -8.00 3.65 -346.29 -1.26 -9.26 16 20 C 0.16 2.16 6.77 86.38 0.58 2.75 16 21 C -0.19 -2.63 5.92 -10.80 -0.06 -2.70 16 22 C -0.18 -2.04 10.18 30.62 0.31 -1.73 16 23 C -0.15 -1.44 10.25 30.62 0.31 -1.12 16 24 C 0.13 3.38 11.25 84.28 0.95 4.33 16 25 H 0.05 2.04 5.65 -2.39 -0.01 2.03 16 26 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 2.81 6.80 -2.39 -0.02 2.79 16 29 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.40 14.53 7.48 -92.71 -0.69 13.84 16 32 H 0.21 4.65 7.50 -2.91 -0.02 4.63 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.13 1.05 7.79 -2.38 -0.02 1.04 16 35 H 0.09 1.84 7.90 -2.38 -0.02 1.82 16 36 H 0.11 0.98 8.03 -2.39 -0.02 0.96 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -71.02 335.65 3.42 -67.60 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.35 Total: 25.12 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.04 Total: -4.27 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -3.94 Total: -103.94 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.06 Total: -29.03 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.02 3.42 -67.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601445602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.876 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds