Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 H 1.09003 * 109.46849 * 54.99481 * 3 2 1 5 5 C 1.50695 * 109.47199 * 174.99927 * 3 2 1 6 6 H 1.08000 * 119.99729 * 120.27501 * 5 3 2 7 7 C 1.37876 * 120.00162 * 299.99986 * 5 3 2 8 8 N 1.31513 * 119.99742 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47027 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46973 * 120.00167 * 9 7 5 12 12 H 1.48499 * 109.47472 * 240.00207 * 9 7 5 13 13 N 1.46499 * 109.46924 * 295.00229 * 3 2 1 14 14 C 1.34777 * 120.00401 * 85.00275 * 13 3 2 15 15 O 1.21588 * 119.99495 * 359.97438 * 14 13 3 16 16 N 1.34771 * 120.00264 * 179.97438 * 14 13 3 17 17 C 1.39945 * 120.00098 * 175.38006 * 16 14 13 18 18 C 1.38946 * 120.02742 * 35.10418 * 17 16 14 19 19 C 1.38142 * 120.07628 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.93312 * 179.97438 * 19 18 17 21 21 C 1.38172 * 120.14444 * 359.97438 * 19 18 17 22 22 C 1.38948 * 120.06618 * 0.02562 * 21 19 18 23 23 N 1.39664 * 120.04575 * 179.97438 * 22 21 19 24 24 C 1.38709 * 120.03354 * 214.82384 * 17 16 14 25 25 H 1.09003 * 109.47157 * 60.00281 * 1 2 3 26 26 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47119 * 299.99645 * 1 2 3 28 28 H 1.09002 * 109.47119 * 240.00355 * 2 1 3 29 29 H 1.09003 * 109.47157 * 119.99719 * 2 1 3 30 30 H 0.97001 * 120.00044 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00169 * 264.99639 * 13 3 2 32 32 H 0.96997 * 120.00320 * 355.38890 * 16 14 13 33 33 H 1.08000 * 119.96412 * 359.97438 * 18 17 16 34 34 H 1.09006 * 109.47281 * 89.99554 * 20 19 18 35 35 H 1.08997 * 109.48112 * 210.00242 * 20 19 18 36 36 H 1.09009 * 109.47170 * 330.00563 * 20 19 18 37 37 H 1.08004 * 119.97111 * 179.97438 * 21 19 18 38 38 H 0.97013 * 119.99409 * 359.97438 * 23 22 21 39 39 H 0.96995 * 120.00300 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.06977 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1469 1.8929 -0.6502 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.5987 1.5453 0.1936 11 1 6.3999 1.6157 2.6091 12 1 6.4962 -0.5189 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3415 2.6319 -0.4320 16 7 0.0787 3.2674 -2.5184 17 6 -1.2179 3.7708 -2.6725 18 6 -1.8820 4.3259 -1.5856 19 6 -3.1622 4.8226 -1.7364 20 6 -3.8797 5.4234 -0.5553 21 6 -3.7863 4.7697 -2.9680 22 6 -3.1278 4.2158 -4.0590 23 7 -3.7592 4.1621 -5.3035 24 6 -1.8391 3.7212 -3.9117 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0609 2.9499 31 1 2.2719 2.1232 -1.9978 32 1 0.7209 3.3524 -3.2403 33 1 -1.3972 4.3684 -0.6215 34 1 -3.6668 6.4913 -0.5056 35 1 -4.9533 5.2718 -0.6665 36 1 -3.5378 4.9419 0.3610 37 1 -4.7874 5.1585 -3.0827 38 1 -4.6585 4.5113 -5.4066 39 1 -3.2988 3.7757 -6.0648 40 1 -1.3233 3.2940 -4.7589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601567565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = -34.565524 kcal Electronic energy + Delta-G solvation = -21430.742508 eV Core-core repulsion = 18243.918044 eV Total energy + Delta-G solvation = -3186.824464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57077 -39.96417 -37.32500 -35.92896 -35.40287 -34.30047 -32.90775 -31.50594 -29.40802 -28.59575 -27.75662 -25.13782 -23.71121 -22.26334 -21.88538 -21.30463 -19.76168 -18.54526 -17.82731 -17.45277 -17.15834 -16.82966 -16.40835 -16.08827 -15.59971 -15.26388 -14.85806 -14.60232 -14.53953 -14.07949 -13.92725 -13.52948 -13.36310 -13.18418 -13.06495 -12.84800 -12.70371 -12.54921 -12.22669 -12.12280 -12.05173 -11.78128 -11.55225 -11.05409 -10.93992 -10.53035 -10.45394 -9.66972 -9.03686 -8.28897 -8.14643 -6.31728 0.49114 0.77646 1.45429 1.46423 1.58076 1.84486 2.29454 2.43945 3.02815 3.10172 3.15209 3.52960 4.01777 4.31996 4.45102 4.50810 4.54138 4.58595 4.69258 4.75997 4.81149 4.86162 4.97392 5.09010 5.17849 5.25184 5.36810 5.45906 5.50449 5.57405 5.58798 5.63150 5.80299 5.88248 5.91215 6.14776 6.18745 6.34725 6.68463 6.76679 7.10849 7.30227 7.37118 7.77420 8.91047 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030434 B = 0.003811 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.799094 B = 7344.722427 C = 7559.817298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.296 3.704 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.609 6.609 16 N -0.680 5.680 17 C 0.205 3.795 18 C -0.209 4.209 19 C -0.033 4.033 20 C -0.112 4.112 21 C -0.222 4.222 22 C 0.237 3.763 23 N -0.864 5.864 24 C -0.240 4.240 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.418 0.582 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.142 0.858 38 H 0.408 0.592 39 H 0.406 0.594 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 7.916 -15.541 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.192 3.808 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.369 5.369 14 C 0.392 3.608 15 O -0.489 6.489 16 N -0.329 5.329 17 C 0.108 3.892 18 C -0.231 4.231 19 C -0.034 4.034 20 C -0.168 4.168 21 C -0.245 4.245 22 C 0.130 3.870 23 N -0.404 5.404 24 C -0.266 4.266 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.255 0.745 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.160 0.840 38 H 0.238 0.762 39 H 0.236 0.764 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.269 7.731 -14.460 20.479 hybrid contribution 1.485 -0.210 -0.265 1.523 sum -10.785 7.520 -14.725 19.741 Atomic orbital electron populations 1.21630 0.97144 0.98790 1.00107 1.21799 0.93551 0.99308 1.01268 1.18272 0.93478 0.88787 0.80215 0.98315 1.21592 0.91290 1.38783 1.06829 0.91000 1.25760 1.03297 0.94410 0.94979 1.70059 1.36976 1.38372 1.09852 0.85309 0.79107 0.77802 0.78162 1.18473 1.21095 1.20434 1.45445 1.14064 1.58845 1.18500 1.16192 0.82971 0.78660 0.82954 1.90880 1.52694 1.65679 1.39624 1.42525 1.12847 1.60360 1.17123 1.17401 0.84129 0.93264 0.94360 1.20931 0.97444 1.05743 0.99022 1.19758 0.92837 0.95061 0.95791 1.20813 1.00498 1.00956 0.94561 1.20584 1.02121 1.10289 0.91532 1.17449 0.90548 0.91955 0.87062 1.42329 1.20063 1.70445 1.07563 1.20290 0.96040 1.13083 0.97145 0.94202 0.93860 0.95618 0.94083 0.90868 0.92598 0.76457 0.74467 0.87921 0.89941 0.89613 0.92939 0.83987 0.76162 0.76430 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.86 16 3 C 0.30 15.36 2.24 44.24 0.10 15.46 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -28.94 8.73 25.60 0.22 -28.72 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -52.42 11.29 21.45 0.24 -52.18 16 9 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 13 N -0.72 -30.07 5.03 -461.42 -2.32 -32.39 16 14 C 0.69 28.83 6.98 179.06 1.25 30.08 16 15 O -0.61 -30.33 10.91 -3.99 -0.04 -30.37 16 16 N -0.68 -21.70 5.34 -317.24 -1.69 -23.40 16 17 C 0.20 6.52 6.30 38.13 0.24 6.76 16 18 C -0.21 -7.33 8.34 22.42 0.19 -7.15 16 19 C -0.03 -0.93 5.87 -19.90 -0.12 -1.05 16 20 C -0.11 -2.56 10.01 71.23 0.71 -1.85 16 21 C -0.22 -5.04 9.54 22.42 0.21 -4.83 16 22 C 0.24 5.07 6.75 38.20 0.26 5.33 16 23 N -0.86 -11.04 9.09 -51.41 -0.47 -11.51 16 24 C -0.24 -5.92 9.81 22.52 0.22 -5.70 16 25 H 0.04 1.85 5.64 -2.39 -0.01 1.83 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 4.09 5.95 -2.39 -0.01 4.07 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.40 14.06 8.56 -92.71 -0.79 13.27 16 32 H 0.42 10.01 8.84 -92.71 -0.82 9.19 16 33 H 0.10 4.35 6.22 -2.91 -0.02 4.33 16 34 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.09 1.53 8.08 -2.39 -0.02 1.52 16 36 H 0.05 1.37 8.08 -2.38 -0.02 1.35 16 37 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.41 3.49 8.84 -92.70 -0.82 2.67 16 39 H 0.41 3.78 8.84 -92.71 -0.82 2.96 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -69.96 327.40 0.11 -69.86 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -2.15 Total: 37.13 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 4.51 Total: -1.24 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -4.24 Total: -119.48 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.04 Total: -30.37 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -69.96 0.11 -69.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601567565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.291 kcal (2) G-P(sol) polarization free energy of solvation -69.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds