Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47221 * 2 1 4 4 N 1.46500 * 109.47024 * 120.00158 * 2 1 3 5 5 C 1.46503 * 119.99666 * 294.88356 * 4 2 1 6 6 C 1.50702 * 109.47111 * 263.39153 * 5 4 2 7 7 H 1.08001 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99792 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99935 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47446 * 60.00112 * 10 8 6 12 12 H 1.48505 * 109.47199 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47031 * 299.99905 * 10 8 6 14 14 C 1.34778 * 120.00132 * 114.88646 * 4 2 1 15 15 O 1.21568 * 119.99976 * 4.29948 * 14 4 2 16 16 C 1.47713 * 119.99964 * 184.30106 * 14 4 2 17 17 N 1.31848 * 126.56916 * 354.16290 * 16 14 4 18 18 N 1.28456 * 110.05481 * 179.97438 * 17 16 14 19 19 H 0.97001 * 124.88674 * 179.97438 * 18 17 16 20 20 C 1.35255 * 110.23253 * 359.97438 * 18 17 16 21 21 C 1.35050 * 107.07928 * 0.02829 * 20 18 17 22 22 C 1.50943 * 110.52875 * 179.97438 * 21 20 18 23 23 C 1.54508 * 105.05895 * 343.17881 * 22 21 20 24 24 C 1.51240 * 142.76633 * 180.02562 * 20 18 17 25 25 H 1.09001 * 109.46854 * 300.00063 * 1 2 3 26 26 H 1.08998 * 109.46759 * 59.99926 * 1 2 3 27 27 H 1.08998 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46854 * 239.99937 * 2 1 3 29 29 H 1.09003 * 109.47234 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47024 * 300.00055 * 3 2 1 31 31 H 1.08994 * 109.47419 * 59.99525 * 3 2 1 32 32 H 1.09003 * 109.47359 * 23.39732 * 5 4 2 33 33 H 1.09006 * 109.46755 * 143.39561 * 5 4 2 34 34 H 0.97009 * 119.99799 * 179.97438 * 9 8 6 35 35 H 1.09002 * 110.34259 * 102.10222 * 22 21 20 36 36 H 1.08991 * 110.34292 * 224.25359 * 22 21 20 37 37 H 1.08999 * 110.93343 * 143.70503 * 23 22 21 38 38 H 1.08999 * 110.93092 * 267.36891 * 23 22 21 39 39 H 1.09000 * 110.32635 * 315.70638 * 24 20 18 40 40 H 1.08994 * 110.32586 * 77.82331 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7592 -0.1281 2.5238 6 6 2.9571 0.6672 2.9750 7 1 3.8245 0.7461 2.3365 8 6 2.9455 1.2940 4.2030 9 7 1.8894 1.1975 4.9807 10 14 4.4301 2.2804 4.7620 11 1 4.6834 3.3823 3.7992 12 1 4.1678 2.8495 6.1084 13 1 5.6194 1.3933 4.8232 14 6 2.7061 -1.8434 1.0752 15 8 2.9890 -2.2696 -0.0276 16 6 3.1161 -2.5890 2.2826 17 7 2.9748 -2.1972 3.5336 18 7 3.4400 -3.0910 4.3304 19 1 3.4453 -3.0230 5.2980 20 6 3.9214 -4.1405 3.6261 21 6 3.7343 -3.8600 2.3184 22 6 4.2481 -4.9875 1.4563 23 6 5.1663 -5.8152 2.3832 24 6 4.5828 -5.4919 3.7797 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.8865 0.5234 2.4784 33 1 1.5725 -0.9366 3.2308 34 1 1.8815 1.6382 5.8448 35 1 3.4196 -5.5992 1.0992 36 1 4.8166 -4.5921 0.6146 37 1 5.0852 -6.8794 2.1624 38 1 6.2008 -5.4807 2.3062 39 1 5.3809 -5.4409 4.5204 40 1 3.8473 -6.2429 4.0676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = 51.026467 kcal Electronic energy + Delta-G solvation = -22494.599414 eV Core-core repulsion = 19311.486497 eV Total energy + Delta-G solvation = -3183.112917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.26068 -38.79699 -36.49859 -35.57034 -32.89326 -31.75929 -30.48372 -28.28686 -27.27424 -27.07190 -26.47268 -23.70228 -22.81823 -21.46551 -20.17458 -19.39410 -17.92557 -17.09460 -16.44016 -16.04597 -15.67515 -15.22695 -14.46568 -14.32052 -13.75276 -13.48350 -13.09572 -12.86335 -12.67280 -12.60502 -12.27156 -12.17921 -11.67638 -11.54517 -11.40703 -11.27544 -11.01894 -10.98790 -10.89345 -10.72246 -10.68454 -10.30994 -9.84200 -9.59036 -9.45337 -9.13489 -8.67612 -8.32976 -8.11365 -7.53294 -5.97900 -3.98194 2.39835 2.59147 3.22286 3.30950 3.34809 3.39402 3.99306 4.25857 4.47405 4.64534 4.81106 5.06946 5.18161 5.36722 5.42808 5.50855 5.66307 5.67820 5.78424 5.83418 5.92172 5.96621 6.10764 6.19246 6.24851 6.26675 6.33564 6.45147 6.49606 6.54565 6.81014 6.94432 6.98800 7.10152 7.46859 7.62709 7.88733 7.95757 8.32746 8.44676 8.60775 9.03401 9.17463 9.63503 11.09952 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.007906 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.334959 B = 3540.643679 C = 4933.874852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 C -0.151 4.151 4 N -0.580 5.580 5 C 0.230 3.770 6 C -0.502 4.502 7 H 0.052 0.948 8 C 0.067 3.933 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.281 1.281 14 C 0.599 3.401 15 O -0.572 6.572 16 C 0.006 3.994 17 N -0.173 5.173 18 N -0.373 5.373 19 H 0.439 0.561 20 C -0.047 4.047 21 C -0.169 4.169 22 C -0.042 4.042 23 C -0.115 4.115 24 C -0.032 4.032 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 -10.614 -2.281 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 C -0.209 4.209 4 N -0.310 5.310 5 C 0.110 3.890 6 C -0.541 4.541 7 H 0.070 0.930 8 C -0.134 4.134 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.207 1.207 14 C 0.386 3.614 15 O -0.452 6.452 16 C -0.154 4.154 17 N -0.007 5.007 18 N -0.085 5.085 19 H 0.282 0.718 20 C -0.172 4.172 21 C -0.179 4.179 22 C -0.081 4.081 23 C -0.153 4.153 24 C -0.071 4.071 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.527 -9.843 -2.062 10.172 hybrid contribution 1.129 0.313 0.784 1.410 sum 2.656 -9.531 -1.278 9.976 Atomic orbital electron populations 1.22134 0.95899 1.01592 1.01968 1.20884 0.93348 0.93593 0.89044 1.22040 1.01594 0.95491 1.01726 1.48242 1.52025 1.21269 1.09482 1.19763 0.96710 0.95353 0.77127 1.21277 1.01100 1.29912 1.01807 0.92976 1.24764 0.95644 0.96595 0.96370 1.69924 1.28424 1.44326 1.10669 0.86779 0.83603 0.80541 0.77723 1.20369 1.21435 1.20679 1.16967 0.77752 0.80486 0.86172 1.90646 1.58240 1.70059 1.26249 1.21331 1.07512 0.94728 0.91852 1.74760 1.14165 1.11555 1.00231 1.43139 1.43987 1.11513 1.09875 0.71823 1.22078 1.07150 0.95131 0.92874 1.20759 1.06185 0.96134 0.94863 1.20297 0.98207 0.92633 0.96938 1.22463 0.99502 1.00026 0.93334 1.20553 0.98522 0.89378 0.98659 0.91843 0.92326 0.93039 0.89556 0.92614 0.93256 0.90788 0.95055 0.91523 0.93110 0.90885 0.90635 0.90329 0.90824 0.91052 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.26 37.16 0.34 -2.32 16 2 C 0.14 2.66 3.23 -67.93 -0.22 2.44 16 3 C -0.15 -2.83 8.65 37.15 0.32 -2.51 16 4 N -0.58 -13.25 2.37 -168.62 -0.40 -13.65 16 5 C 0.23 5.74 3.91 -5.19 -0.02 5.72 16 6 C -0.50 -13.44 7.55 -34.44 -0.26 -13.70 16 7 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 10 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.60 14.15 7.62 -12.39 -0.09 14.05 16 15 O -0.57 -13.97 16.27 5.31 0.09 -13.88 16 16 C 0.01 0.14 6.81 -82.80 -0.56 -0.43 16 17 N -0.17 -3.81 8.09 33.40 0.27 -3.54 16 18 N -0.37 -6.55 6.84 33.62 0.23 -6.32 16 19 H 0.44 6.25 8.96 -190.45 -1.71 4.54 16 20 C -0.05 -0.75 8.12 -81.95 -0.67 -1.41 16 21 C -0.17 -3.15 6.83 -104.44 -0.71 -3.86 16 22 C -0.04 -0.62 6.77 -26.97 -0.18 -0.80 16 23 C -0.12 -1.23 7.15 -25.02 -0.18 -1.41 16 24 C -0.03 -0.35 6.79 -26.69 -0.18 -0.53 16 25 H 0.06 1.13 6.92 -51.93 -0.36 0.77 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.72 6.91 -51.93 -0.36 1.36 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.52 7.08 -51.93 -0.37 1.15 16 32 H 0.03 0.81 6.49 -51.93 -0.34 0.48 16 33 H 0.07 1.76 5.34 -51.93 -0.28 1.48 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -31.92 325.09 -8.89 -40.81 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.18 Total: 2.54 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.51 Total: -3.03 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.84 Total: -47.68 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.92 -8.89 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.840 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds