Wall clock time and date at job start Mon Mar 30 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47143 * 2 1 4 4 N 1.46500 * 109.47616 * 119.99847 * 2 1 3 5 5 C 1.46497 * 120.00191 * 119.21040 * 4 2 1 6 6 C 1.50703 * 109.47161 * 270.00489 * 5 4 2 7 7 H 1.07996 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00309 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00153 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46959 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46870 * 119.99724 * 10 8 6 13 13 H 1.48500 * 109.47478 * 240.00392 * 10 8 6 14 14 C 1.34780 * 120.00009 * 299.21375 * 4 2 1 15 15 O 1.21284 * 119.99760 * 5.30482 * 14 4 2 16 16 C 1.50696 * 120.00024 * 185.31182 * 14 4 2 17 17 C 1.52998 * 109.46997 * 177.82465 * 16 14 4 18 18 C 1.50703 * 109.47024 * 179.97438 * 17 16 14 19 19 C 1.38625 * 120.45067 * 124.99585 * 18 17 16 20 20 C 1.38572 * 118.40110 * 179.70187 * 19 18 17 21 21 N 1.32349 * 119.10368 * 0.27340 * 20 19 18 22 22 C 1.31778 * 120.82169 * 0.02562 * 21 20 19 23 23 N 1.31809 * 121.75376 * 359.97438 * 22 21 20 24 24 H 1.09010 * 109.47051 * 306.61381 * 1 2 3 25 25 H 1.08997 * 109.47618 * 66.61644 * 1 2 3 26 26 H 1.09003 * 109.47036 * 186.62087 * 1 2 3 27 27 H 1.08998 * 109.47370 * 240.00088 * 2 1 3 28 28 H 1.09005 * 109.47505 * 173.89202 * 3 2 1 29 29 H 1.09004 * 109.46814 * 293.89159 * 3 2 1 30 30 H 1.09003 * 109.47060 * 53.88640 * 3 2 1 31 31 H 1.09004 * 109.46956 * 30.00329 * 5 4 2 32 32 H 1.08996 * 109.47578 * 150.00443 * 5 4 2 33 33 H 0.97002 * 119.99979 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47604 * 57.82177 * 16 14 4 35 35 H 1.09004 * 109.46735 * 297.82468 * 16 14 4 36 36 H 1.08998 * 109.47754 * 59.99951 * 17 16 14 37 37 H 1.09002 * 109.47095 * 299.99159 * 17 16 14 38 38 H 1.07997 * 120.79402 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.44800 * 180.30085 * 20 19 18 40 40 H 1.07997 * 119.12382 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8463 -1.8916 1.0618 6 6 1.9610 -3.1107 1.0271 7 1 0.8890 -3.0017 1.0983 8 6 2.5198 -4.3652 0.9042 9 7 3.8253 -4.4979 0.8169 10 14 1.4225 -5.8764 0.8619 11 1 0.0016 -5.4597 0.9757 12 1 1.6248 -6.5991 -0.4196 13 1 1.7686 -6.7714 1.9951 14 6 1.7060 -0.2209 2.4202 15 8 0.9429 0.7149 2.5341 16 6 2.3049 -0.8584 3.6473 17 6 1.8333 -0.1073 4.8940 18 6 2.4317 -0.7452 6.1212 19 6 3.1637 0.0135 7.0214 20 6 3.6895 -0.6152 8.1388 21 7 3.4816 -1.9116 8.3055 22 6 2.7855 -2.6025 7.4253 23 7 2.2705 -2.0383 6.3512 24 1 -0.3634 0.6130 0.8250 25 1 -0.3634 0.4078 -0.9432 26 1 -0.3633 -1.0208 0.1185 27 1 1.8933 -0.5138 -0.8900 28 1 3.1245 1.4445 0.1093 29 1 1.7686 1.9238 -0.9397 30 1 1.5900 1.9870 0.8302 31 1 3.4223 -1.8344 0.1382 32 1 3.5267 -1.9608 1.9106 33 1 4.2184 -5.3805 0.7309 34 1 3.3923 -0.8139 3.5860 35 1 1.9868 -1.8992 3.7080 36 1 0.7459 -0.1518 4.9555 37 1 2.1515 0.9334 4.8333 38 1 3.3165 1.0700 6.8581 39 1 4.2609 -0.0548 8.8639 40 1 2.6330 -3.6591 7.5884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617352651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:15 Heat of formation + Delta-G solvation = -2.640812 kcal Electronic energy + Delta-G solvation = -21609.120895 eV Core-core repulsion = 18423.680790 eV Total energy + Delta-G solvation = -3185.440105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94895 -39.34763 -35.63250 -34.68917 -33.22849 -32.63289 -31.70391 -30.34447 -27.00894 -26.59681 -25.57511 -24.30257 -22.94001 -22.33815 -20.86402 -18.05891 -17.43551 -16.79905 -16.58816 -15.88322 -15.44744 -15.31880 -14.93013 -14.62879 -14.37366 -13.72791 -13.67552 -13.25280 -12.93097 -12.52915 -12.35152 -12.28850 -11.80881 -11.70042 -11.46276 -11.41543 -10.97784 -10.89818 -10.88905 -10.75456 -10.59068 -10.39428 -10.36574 -10.03151 -9.67025 -9.54923 -9.14578 -8.78026 -8.52689 -7.67408 -6.16041 -4.22830 0.94822 1.10581 3.24180 3.32524 3.36109 3.45867 3.78326 3.95446 4.15081 4.20318 4.36170 4.52566 5.00433 5.05396 5.17250 5.32562 5.41959 5.46679 5.55502 5.66843 5.71525 5.79787 5.92303 6.00990 6.09144 6.23888 6.29774 6.36955 6.43606 6.47311 6.59449 6.74431 6.83514 6.89339 7.05956 7.20178 7.61877 7.79869 8.08408 8.15682 8.39856 8.82996 9.06562 9.45464 10.90756 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.006291 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.835483 B = 4449.813237 C = 6233.257247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.592 5.592 5 C 0.236 3.764 6 C -0.533 4.533 7 H 0.062 0.938 8 C 0.065 3.935 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.521 3.479 15 O -0.574 6.574 16 C -0.127 4.127 17 C -0.056 4.056 18 C 0.187 3.813 19 C -0.229 4.229 20 C 0.144 3.856 21 N -0.532 5.532 22 C 0.297 3.703 23 N -0.509 5.509 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 8.749 7.991 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.322 5.322 5 C 0.117 3.883 6 C -0.572 4.572 7 H 0.080 0.920 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.310 3.690 15 O -0.456 6.456 16 C -0.167 4.167 17 C -0.094 4.094 18 C 0.040 3.960 19 C -0.251 4.251 20 C -0.021 4.021 21 N -0.247 5.247 22 C 0.009 3.991 23 N -0.223 5.223 24 H 0.092 0.908 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.164 0.836 39 H 0.182 0.818 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.658 8.100 8.142 11.504 hybrid contribution -0.172 -0.325 -0.258 0.449 sum -0.830 7.775 7.884 11.104 Atomic orbital electron populations 1.22165 0.95655 1.02604 1.01622 1.20817 0.94282 0.92164 0.88341 1.22181 1.00782 0.97070 1.02131 1.48327 1.51176 1.28489 1.04235 1.19467 0.90080 0.80469 0.98331 1.21525 0.93817 0.90729 1.51128 0.92011 1.24929 0.95020 0.99064 0.94757 1.69928 1.09751 1.23818 1.49615 0.86479 0.80900 0.82680 0.77672 1.19638 1.20952 1.20789 1.20321 0.80994 0.82783 0.84918 1.90527 1.37377 1.30694 1.87031 1.21513 1.01522 1.02710 0.90983 1.20401 1.01699 0.98547 0.88748 1.21911 0.89952 0.89370 0.94720 1.22801 1.01858 1.02998 0.97394 1.23164 0.93458 0.90621 0.94906 1.68401 1.16315 1.08431 1.31536 1.25018 0.88371 1.00802 0.84881 1.68328 1.21365 1.11840 1.20734 0.90833 0.93287 0.92439 0.90036 0.93189 0.92728 0.91000 0.94850 0.94403 0.92648 0.89756 0.86773 0.88716 0.89559 0.83609 0.81802 0.78840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.01 37.15 0.33 -2.55 16 2 C 0.15 2.72 3.28 -67.93 -0.22 2.50 16 3 C -0.16 -2.62 9.01 37.16 0.33 -2.28 16 4 N -0.59 -12.22 2.41 -167.47 -0.40 -12.62 16 5 C 0.24 5.57 4.99 -5.19 -0.03 5.55 16 6 C -0.53 -13.89 9.39 -34.44 -0.32 -14.21 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 10 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.52 10.35 7.08 -10.99 -0.08 10.27 16 15 O -0.57 -11.76 12.37 5.55 0.07 -11.70 16 16 C -0.13 -2.27 4.06 -27.89 -0.11 -2.38 16 17 C -0.06 -0.83 4.94 -27.88 -0.14 -0.96 16 18 C 0.19 2.67 6.21 -82.24 -0.51 2.16 16 19 C -0.23 -2.60 9.80 -39.32 -0.39 -2.99 16 20 C 0.14 1.59 11.30 -17.21 -0.19 1.39 16 21 N -0.53 -7.06 10.44 -14.59 -0.15 -7.21 16 22 C 0.30 4.12 12.29 -92.16 -1.13 2.98 16 23 N -0.51 -8.03 10.03 -10.79 -0.11 -8.14 16 24 H 0.07 1.38 6.27 -51.92 -0.33 1.06 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.51 7.79 -51.93 -0.40 1.10 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.24 6.47 -51.93 -0.34 0.90 16 31 H 0.03 0.83 7.91 -51.93 -0.41 0.42 16 32 H 0.04 0.92 6.39 -51.93 -0.33 0.59 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.08 1.47 7.48 -51.93 -0.39 1.09 16 35 H 0.11 2.32 7.93 -51.93 -0.41 1.90 16 36 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 37 H 0.09 1.14 7.92 -51.93 -0.41 0.73 16 38 H 0.15 1.24 8.01 -52.49 -0.42 0.82 16 39 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.20 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -29.86 335.26 -8.32 -38.17 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.94 Total: 3.49 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.55 Total: 1.11 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.07 Total: -51.98 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.86 -8.32 -38.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617352651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.534 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds