Wall clock time and date at job start Mon Mar 30 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47143 * 2 1 4 4 N 1.46500 * 109.47616 * 119.99847 * 2 1 3 5 5 C 1.46497 * 120.00191 * 119.21040 * 4 2 1 6 6 C 1.50703 * 109.47161 * 270.00489 * 5 4 2 7 7 H 1.07996 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00309 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00153 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46959 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46870 * 119.99724 * 10 8 6 13 13 H 1.48500 * 109.47478 * 240.00392 * 10 8 6 14 14 C 1.34780 * 120.00009 * 299.21375 * 4 2 1 15 15 O 1.21284 * 119.99760 * 5.30482 * 14 4 2 16 16 C 1.50696 * 120.00024 * 185.31182 * 14 4 2 17 17 C 1.52998 * 109.46997 * 177.82465 * 16 14 4 18 18 C 1.50703 * 109.47024 * 179.97438 * 17 16 14 19 19 C 1.38625 * 120.45067 * 124.99585 * 18 17 16 20 20 C 1.38572 * 118.40110 * 179.70187 * 19 18 17 21 21 N 1.32349 * 119.10368 * 0.27340 * 20 19 18 22 22 C 1.31778 * 120.82169 * 0.02562 * 21 20 19 23 23 N 1.31809 * 121.75376 * 359.97438 * 22 21 20 24 24 H 1.09010 * 109.47051 * 306.61381 * 1 2 3 25 25 H 1.08997 * 109.47618 * 66.61644 * 1 2 3 26 26 H 1.09003 * 109.47036 * 186.62087 * 1 2 3 27 27 H 1.08998 * 109.47370 * 240.00088 * 2 1 3 28 28 H 1.09005 * 109.47505 * 173.89202 * 3 2 1 29 29 H 1.09004 * 109.46814 * 293.89159 * 3 2 1 30 30 H 1.09003 * 109.47060 * 53.88640 * 3 2 1 31 31 H 1.09004 * 109.46956 * 30.00329 * 5 4 2 32 32 H 1.08996 * 109.47578 * 150.00443 * 5 4 2 33 33 H 0.97002 * 119.99979 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47604 * 57.82177 * 16 14 4 35 35 H 1.09004 * 109.46735 * 297.82468 * 16 14 4 36 36 H 1.08998 * 109.47754 * 59.99951 * 17 16 14 37 37 H 1.09002 * 109.47095 * 299.99159 * 17 16 14 38 38 H 1.07997 * 120.79402 * 359.97438 * 19 18 17 39 39 H 1.07997 * 120.44800 * 180.30085 * 20 19 18 40 40 H 1.07997 * 119.12382 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8463 -1.8916 1.0618 6 6 1.9610 -3.1107 1.0271 7 1 0.8890 -3.0017 1.0983 8 6 2.5198 -4.3652 0.9042 9 7 3.8253 -4.4979 0.8169 10 14 1.4225 -5.8764 0.8619 11 1 0.0016 -5.4597 0.9757 12 1 1.6248 -6.5991 -0.4196 13 1 1.7686 -6.7714 1.9951 14 6 1.7060 -0.2209 2.4202 15 8 0.9429 0.7149 2.5341 16 6 2.3049 -0.8584 3.6473 17 6 1.8333 -0.1073 4.8940 18 6 2.4317 -0.7452 6.1212 19 6 3.1637 0.0135 7.0214 20 6 3.6895 -0.6152 8.1388 21 7 3.4816 -1.9116 8.3055 22 6 2.7855 -2.6025 7.4253 23 7 2.2705 -2.0383 6.3512 24 1 -0.3634 0.6130 0.8250 25 1 -0.3634 0.4078 -0.9432 26 1 -0.3633 -1.0208 0.1185 27 1 1.8933 -0.5138 -0.8900 28 1 3.1245 1.4445 0.1093 29 1 1.7686 1.9238 -0.9397 30 1 1.5900 1.9870 0.8302 31 1 3.4223 -1.8344 0.1382 32 1 3.5267 -1.9608 1.9106 33 1 4.2184 -5.3805 0.7309 34 1 3.3923 -0.8139 3.5860 35 1 1.9868 -1.8992 3.7080 36 1 0.7459 -0.1518 4.9555 37 1 2.1515 0.9334 4.8333 38 1 3.3165 1.0700 6.8581 39 1 4.2609 -0.0548 8.8639 40 1 2.6330 -3.6591 7.5884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617352651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:15 Heat of formation + Delta-G solvation = -18.756825 kcal Electronic energy + Delta-G solvation = -21609.819738 eV Core-core repulsion = 18423.680790 eV Total energy + Delta-G solvation = -3186.138947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95727 -40.93073 -37.16790 -35.96762 -35.00973 -33.79800 -33.24529 -31.61294 -28.91573 -27.98377 -26.84533 -25.28828 -24.80238 -23.62477 -22.22192 -19.61000 -18.68845 -18.41852 -17.99352 -17.40504 -16.83122 -16.47066 -16.32400 -16.18427 -15.80924 -15.06833 -14.87204 -14.51537 -14.45190 -14.06192 -13.89791 -13.69598 -13.50169 -13.21122 -13.01765 -12.82156 -12.73297 -12.65131 -12.27881 -12.14162 -12.05603 -11.77434 -11.72220 -11.61702 -11.50701 -10.64826 -10.52621 -10.31539 -10.15633 -9.39398 -8.20951 -6.34667 -0.02964 0.14323 1.37697 1.40975 1.51172 1.82533 2.31783 2.44653 2.84283 3.09382 3.11433 3.31084 3.51693 3.83833 4.02327 4.14063 4.19332 4.26059 4.29479 4.33190 4.43032 4.62957 4.66541 4.75237 4.81538 4.84980 4.97456 5.02476 5.04518 5.06264 5.16049 5.18818 5.34128 5.45057 5.48967 5.67915 5.96973 6.07101 6.09576 6.61392 6.85733 7.16326 7.33518 7.46291 8.84443 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.006291 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.835483 B = 4449.813237 C = 6233.257247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 C -0.151 4.151 4 N -0.598 5.598 5 C 0.253 3.747 6 C -0.540 4.540 7 H 0.049 0.951 8 C 0.022 3.978 9 N -0.920 5.920 10 Si 0.952 3.048 11 H -0.273 1.273 12 H -0.276 1.276 13 H -0.278 1.278 14 C 0.518 3.482 15 O -0.578 6.578 16 C -0.118 4.118 17 C -0.044 4.044 18 C 0.163 3.837 19 C -0.216 4.216 20 C 0.145 3.855 21 N -0.544 5.544 22 C 0.284 3.716 23 N -0.546 5.546 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.027 0.973 33 H 0.267 0.733 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.180 0.820 39 H 0.206 0.794 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 9.968 8.570 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 C -0.209 4.209 4 N -0.328 5.328 5 C 0.132 3.868 6 C -0.579 4.579 7 H 0.068 0.932 8 C -0.178 4.178 9 N -0.560 5.560 10 Si 0.778 3.222 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.204 1.204 14 C 0.307 3.693 15 O -0.460 6.460 16 C -0.158 4.158 17 C -0.082 4.082 18 C 0.017 3.983 19 C -0.238 4.238 20 C -0.020 4.020 21 N -0.258 5.258 22 C -0.004 4.004 23 N -0.261 5.261 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.198 0.802 39 H 0.223 0.777 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.558 9.339 8.715 12.787 hybrid contribution -0.197 -0.650 -0.422 0.800 sum -0.756 8.690 8.293 12.036 Atomic orbital electron populations 1.22067 0.95079 1.01051 1.02854 1.21087 0.94792 0.93505 0.87373 1.22062 1.00520 0.95068 1.03232 1.48334 1.51106 1.27895 1.05475 1.19069 0.89743 0.81035 0.96978 1.21687 0.93439 0.91940 1.50792 0.93242 1.25605 0.96133 1.01566 0.94503 1.70007 1.10992 1.24545 1.50444 0.85592 0.79136 0.79595 0.77892 1.19730 1.20161 1.20418 1.20622 0.80819 0.82713 0.85142 1.90516 1.37458 1.30912 1.87120 1.21393 1.01392 1.01275 0.91778 1.20281 1.01018 0.99170 0.87724 1.21932 0.91456 0.89499 0.95374 1.23119 0.99965 1.04352 0.96321 1.23894 0.92734 0.90011 0.95346 1.68469 1.16293 1.09696 1.31360 1.25324 0.88668 1.01683 0.84736 1.68264 1.22741 1.13078 1.21969 0.91940 0.90161 0.94761 0.90310 0.93197 0.89799 0.92116 0.96266 0.95466 0.92412 0.89668 0.89685 0.89909 0.87528 0.80241 0.77693 0.77484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.01 71.98 0.65 -4.65 16 2 C 0.14 4.92 3.28 44.99 0.15 5.07 16 3 C -0.15 -4.58 9.01 71.98 0.65 -3.93 16 4 N -0.60 -24.96 2.41 -802.15 -1.93 -26.89 16 5 C 0.25 12.23 4.99 85.63 0.43 12.65 16 6 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 7 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 8 C 0.02 1.18 5.46 84.65 0.46 1.65 16 9 N -0.92 -51.58 13.29 21.44 0.28 -51.30 16 10 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.52 20.73 7.08 87.66 0.62 21.35 16 15 O -0.58 -23.47 12.37 -3.04 -0.04 -23.50 16 16 C -0.12 -4.31 4.06 29.85 0.12 -4.19 16 17 C -0.04 -1.28 4.94 29.85 0.15 -1.14 16 18 C 0.16 4.54 6.21 42.58 0.26 4.81 16 19 C -0.22 -4.38 9.80 22.44 0.22 -4.16 16 20 C 0.15 2.80 11.30 84.69 0.96 3.76 16 21 N -0.54 -13.63 10.44 -200.06 -2.09 -15.72 16 22 C 0.28 7.82 12.29 180.88 2.22 10.04 16 23 N -0.55 -17.43 10.03 -188.06 -1.89 -19.31 16 24 H 0.06 2.30 6.27 -2.38 -0.01 2.29 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 2.88 7.79 -2.39 -0.02 2.86 16 28 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 1.99 6.47 -2.39 -0.02 1.97 16 31 H 0.02 0.98 7.91 -2.38 -0.02 0.96 16 32 H 0.03 1.37 6.39 -2.39 -0.02 1.36 16 33 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.08 3.05 7.48 -2.39 -0.02 3.03 16 35 H 0.08 3.62 7.93 -2.38 -0.02 3.60 16 36 H 0.08 2.60 8.08 -2.39 -0.02 2.58 16 37 H 0.11 2.64 7.92 -2.39 -0.02 2.63 16 38 H 0.18 2.32 8.01 -2.91 -0.02 2.30 16 39 H 0.21 2.12 8.06 -2.91 -0.02 2.09 16 40 H 0.21 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -64.57 335.26 4.52 -60.05 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.02 Total: 18.77 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 7.13 Total: 12.78 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -5.62 Total: -113.23 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.04 Total: -23.50 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -64.57 4.52 -60.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617352651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.294 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds