Wall clock time and date at job start Mon Mar 30 2020 01:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34395 * 125.74554 * 2 1 4 4 C 1.38286 * 107.36820 * 179.97438 * 3 2 1 5 5 C 1.46964 * 126.44664 * 179.97438 * 4 3 2 6 6 C 1.35043 * 119.99929 * 134.59706 * 5 4 3 7 7 C 1.41826 * 120.00427 * 347.23063 * 6 5 4 8 8 O 1.21739 * 119.99516 * 353.14966 * 7 6 5 9 9 N 1.34770 * 120.00149 * 173.15137 * 7 6 5 10 10 C 1.46504 * 120.00135 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47491 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46529 * 299.99582 * 11 10 9 13 13 C 1.53004 * 109.47466 * 59.99349 * 11 10 9 14 14 C 1.50695 * 109.47230 * 179.97438 * 11 10 9 15 15 H 1.08000 * 120.00251 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99739 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00489 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99829 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47415 * 59.99924 * 18 16 14 20 20 H 1.48497 * 109.47411 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47080 * 300.00039 * 18 16 14 22 22 C 1.41434 * 107.11353 * 0.25806 * 4 3 2 23 23 N 1.30451 * 108.03753 * 359.55491 * 22 4 3 24 24 H 1.09002 * 109.46938 * 90.00459 * 1 2 3 25 25 H 1.09003 * 109.47485 * 210.00649 * 1 2 3 26 26 H 1.08999 * 109.47466 * 330.00792 * 1 2 3 27 27 H 1.08000 * 126.31402 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.99739 * 314.60037 * 5 4 3 29 29 H 1.08007 * 119.99704 * 167.22246 * 6 5 4 30 30 H 0.97000 * 120.00303 * 359.97438 * 9 7 6 31 31 H 1.09010 * 109.46792 * 299.99626 * 10 9 7 32 32 H 1.08998 * 109.47488 * 59.99360 * 10 9 7 33 33 H 1.09004 * 109.47330 * 60.00201 * 12 11 10 34 34 H 1.09005 * 109.46705 * 179.97438 * 12 11 10 35 35 H 1.08994 * 109.47414 * 299.99794 * 12 11 10 36 36 H 1.09003 * 109.46640 * 60.00335 * 13 11 10 37 37 H 1.08997 * 109.47102 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.47040 * 300.00750 * 13 11 10 39 39 H 0.96995 * 119.99960 * 180.02562 * 17 16 14 40 40 H 1.08001 * 125.98316 * 179.70480 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2501 1.0908 0.0000 4 6 3.5624 0.6548 0.0006 5 6 4.7637 1.5014 0.0003 6 6 5.7884 1.2198 0.8335 7 6 5.6095 0.2890 1.8885 8 8 4.5028 -0.1618 2.1212 9 7 6.6644 -0.0964 2.6333 10 6 6.4796 -1.0583 3.7228 11 6 7.8241 -1.3223 4.4037 12 6 8.8100 -1.8923 3.3819 13 6 8.3757 -0.0117 4.9686 14 6 7.6338 -2.3112 5.5247 15 1 6.6521 -2.7112 5.7312 16 6 8.7131 -2.7054 6.2868 17 7 9.9087 -2.2188 6.0351 18 14 8.4774 -3.9319 7.6759 19 1 7.9416 -5.2038 7.1278 20 1 9.7823 -4.1880 8.3369 21 1 7.5208 -3.3785 8.6679 22 6 3.5312 -0.7592 -0.0051 23 7 2.2823 -1.1357 0.0008 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.9174 2.1183 0.0004 28 1 4.8268 2.3488 -0.6662 29 1 6.7444 1.7033 0.6963 30 1 7.5463 0.2625 2.4477 31 1 5.7775 -0.6520 4.4510 32 1 6.0862 -1.9919 3.3205 33 1 8.9475 -1.1766 2.5713 34 1 9.7680 -2.0799 3.8669 35 1 8.4170 -2.8259 2.9795 36 1 7.6733 0.3944 5.6965 37 1 9.3337 -0.1997 5.4533 38 1 8.5132 0.7040 4.1580 39 1 10.6680 -2.4964 6.5710 40 1 4.3910 -1.4128 -0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701315429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:48 Heat of formation + Delta-G solvation = 64.040523 kcal Electronic energy + Delta-G solvation = -21303.662180 eV Core-core repulsion = 18121.113595 eV Total energy + Delta-G solvation = -3182.548585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95704 -39.19694 -36.39283 -33.97963 -33.10226 -32.48721 -30.82761 -29.40082 -26.80081 -25.66997 -25.59783 -24.98557 -22.74848 -20.87569 -20.67462 -19.06806 -18.57820 -17.26921 -16.22170 -15.69635 -15.38133 -15.01896 -14.68024 -14.53523 -14.10249 -13.93023 -13.17009 -13.08350 -12.83676 -12.68501 -12.58760 -12.49376 -12.10259 -12.04337 -11.32316 -11.13632 -10.80699 -10.69354 -10.54467 -10.32766 -10.16215 -9.78927 -9.57599 -9.37656 -9.24802 -9.09244 -8.74060 -8.36796 -8.12779 -7.70971 -5.97874 -4.07685 1.22700 2.11614 2.61924 3.21427 3.32922 3.36854 3.40787 3.92253 4.10776 4.45087 4.53440 4.82665 5.00345 5.07241 5.23067 5.26530 5.28652 5.38220 5.69338 5.81131 5.93094 6.27815 6.40642 6.41930 6.52968 6.61771 6.82262 6.88053 6.88695 7.02288 7.08397 7.09163 7.18414 7.43134 7.61280 7.73814 7.89478 8.06466 8.16627 8.30564 8.44570 8.90097 8.96446 9.57833 11.03469 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.003724 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.392418 B = 7516.801816 C = 8163.789020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.378 5.378 3 C 0.065 3.935 4 C -0.209 4.209 5 C 0.017 3.983 6 C -0.224 4.224 7 C 0.531 3.469 8 O -0.545 6.545 9 N -0.716 5.716 10 C 0.134 3.866 11 C 0.056 3.944 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.506 4.506 15 H 0.056 0.944 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.122 3.878 23 N -0.309 5.309 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.172 0.828 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.396 0.604 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.007 0.993 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.084 0.916 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 9.445 -13.559 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.158 5.158 3 C -0.082 4.082 4 C -0.221 4.221 5 C -0.005 4.005 6 C -0.245 4.245 7 C 0.320 3.680 8 O -0.425 6.425 9 N -0.366 5.366 10 C 0.011 3.989 11 C 0.055 3.945 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.544 4.544 15 H 0.074 0.926 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.065 4.065 23 N -0.129 5.129 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.189 0.811 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.231 0.769 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.503 8.078 -13.274 19.944 hybrid contribution 0.977 0.308 0.879 1.351 sum -11.525 8.386 -12.394 18.888 Atomic orbital electron populations 1.21776 0.74717 1.04361 1.02861 1.48074 1.06421 1.03934 1.57394 1.22797 0.90586 0.93015 1.01834 1.19224 0.92167 0.93412 1.17261 1.21550 0.90378 0.94382 0.94147 1.22121 1.00221 1.03919 0.98272 1.17254 0.85003 0.82311 0.83456 1.90845 1.24091 1.56729 1.70855 1.46336 1.10411 1.45512 1.34326 1.21623 1.00095 0.90180 0.86981 1.18340 0.88941 0.93969 0.93223 1.21820 1.03338 0.97310 0.96307 1.21822 1.03302 0.95633 0.98024 1.20972 0.94523 1.24570 1.14350 0.92579 1.24875 0.95173 0.96210 0.97240 1.69794 0.99132 1.43704 1.39922 0.86648 0.77190 0.81778 0.82323 1.20281 1.21343 1.20324 1.23727 0.94401 0.93822 0.94597 1.77071 1.02187 1.07651 1.25990 0.91101 0.89438 0.89821 0.81104 0.85576 0.85623 0.76935 0.93064 0.92934 0.97437 0.89692 0.95506 0.95564 0.89687 0.97455 0.93002 0.80819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.44 59.85 0.68 1.52 16 2 N -0.38 -4.92 3.98 -67.50 -0.27 -5.19 16 3 C 0.06 0.78 11.52 -16.41 -0.19 0.59 16 4 C -0.21 -2.91 4.45 -105.13 -0.47 -3.38 16 5 C 0.02 0.20 10.13 -37.18 -0.38 -0.18 16 6 C -0.22 -2.94 9.81 -39.35 -0.39 -3.32 16 7 C 0.53 9.31 7.17 -14.89 -0.11 9.20 16 8 O -0.54 -11.32 12.40 5.15 0.06 -11.25 16 9 N -0.72 -13.04 4.95 -63.16 -0.31 -13.35 16 10 C 0.13 2.94 4.50 -4.04 -0.02 2.92 16 11 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 12 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 13 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 14 C -0.51 -13.54 8.01 -34.44 -0.28 -13.82 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.89 -23.98 9.35 55.43 0.52 -23.46 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.12 1.97 9.14 -16.92 -0.15 1.82 16 23 N -0.31 -5.11 12.49 30.89 0.39 -4.72 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.40 6.53 6.12 -40.82 -0.25 6.28 16 31 H 0.05 1.20 8.14 -51.92 -0.42 0.77 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 34 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 38 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 39 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.17 2.77 7.95 -52.49 -0.42 2.35 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -32.34 329.16 -6.31 -38.66 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.78 Total: 5.40 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.86 Total: -7.11 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.32 Total: -46.72 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.06 Total: -11.25 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.34 -6.31 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701315429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.697 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds