Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33011 * 120.00110 * 2 1 4 4 C 1.47077 * 119.99980 * 353.11574 * 3 2 1 5 5 O 1.21644 * 119.99761 * 353.70127 * 4 3 2 6 6 N 1.34774 * 119.99930 * 173.70870 * 4 3 2 7 7 C 1.40518 * 119.99706 * 180.02562 * 6 4 3 8 8 C 1.40661 * 126.08863 * 0.02562 * 7 6 4 9 9 N 1.30903 * 108.39071 * 179.74158 * 8 7 6 10 10 N 1.40069 * 108.41251 * 0.02562 * 9 8 7 11 11 C 1.37312 * 126.07040 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99971 * 179.97438 * 11 10 9 13 13 C 1.38992 * 119.99784 * 359.97302 * 11 10 9 14 14 N 1.31298 * 119.99957 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00180 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47411 * 89.99564 * 15 13 11 17 17 H 1.48494 * 109.47408 * 209.99983 * 15 13 11 18 18 H 1.48504 * 109.47079 * 329.99730 * 15 13 11 19 19 C 1.35706 * 126.08192 * 179.71409 * 7 6 4 20 20 C 1.50703 * 119.99977 * 180.02562 * 2 1 3 21 21 C 1.53001 * 109.46813 * 179.97438 * 20 2 1 22 22 C 1.52996 * 109.46839 * 299.99523 * 20 2 1 23 23 C 1.53000 * 109.47139 * 59.99290 * 20 2 1 24 24 H 1.08993 * 109.47206 * 84.47084 * 1 2 3 25 25 H 1.09004 * 109.46869 * 204.47947 * 1 2 3 26 26 H 1.09004 * 109.46791 * 324.47175 * 1 2 3 27 27 H 1.07994 * 120.00215 * 173.10943 * 3 2 1 28 28 H 0.97000 * 120.00034 * 359.97438 * 6 4 3 29 29 H 1.08003 * 125.80504 * 359.72618 * 8 7 6 30 30 H 0.96998 * 119.99814 * 180.02562 * 14 13 11 31 31 H 1.07994 * 126.24764 * 0.23585 * 19 7 6 32 32 H 1.08998 * 109.46828 * 60.00251 * 21 20 2 33 33 H 1.09001 * 109.46659 * 179.97438 * 21 20 2 34 34 H 1.08993 * 109.47616 * 299.99932 * 21 20 2 35 35 H 1.08996 * 109.47152 * 60.00382 * 22 20 2 36 36 H 1.09001 * 109.47082 * 179.97438 * 22 20 2 37 37 H 1.09000 * 109.47341 * 299.99645 * 22 20 2 38 38 H 1.09005 * 109.46577 * 60.00098 * 23 20 2 39 39 H 1.08997 * 109.46981 * 179.97438 * 23 20 2 40 40 H 1.08993 * 109.47239 * 300.00451 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4447 2.4210 -0.1527 5 8 0.2523 2.4135 -0.3933 6 7 2.0993 3.5923 -0.0261 7 6 1.4041 4.8049 -0.1715 8 6 0.0321 4.9454 -0.4478 9 7 -0.2491 6.2226 -0.5045 10 7 0.9272 6.9455 -0.2683 11 6 1.0445 8.3134 -0.2445 12 1 2.0040 8.7698 -0.0515 13 6 -0.0718 9.1105 -0.4690 14 7 -1.2382 8.5556 -0.7043 15 14 0.0878 10.9714 -0.4374 16 1 0.4060 11.4642 -1.8016 17 1 -1.1920 11.5703 0.0194 18 1 1.1764 11.3590 0.4954 19 6 1.9359 6.0488 -0.0643 20 6 2.2606 -1.3051 -0.0006 21 6 3.7648 -1.0255 -0.0011 22 6 1.8910 -2.1078 1.2483 23 6 1.8908 -2.1069 -1.2501 24 1 -0.3633 0.0990 -1.0228 25 1 -0.3633 -0.9353 0.4259 26 1 -0.3633 0.8364 0.5972 27 1 3.2462 1.1553 0.1122 28 1 3.0500 3.5983 0.1660 29 1 -0.6699 4.1369 -0.5893 30 1 -2.0171 9.1119 -0.8613 31 1 2.9687 6.2860 0.1441 32 1 4.0284 -0.4541 0.8889 33 1 4.3098 -1.9695 -0.0011 34 1 4.0278 -0.4537 -0.8910 35 1 0.8194 -2.3070 1.2483 36 1 2.4356 -3.0520 1.2477 37 1 2.1544 -1.5367 2.1385 38 1 2.1541 -1.5349 -2.1399 39 1 2.4361 -3.0507 -1.2507 40 1 0.8192 -2.3060 -1.2501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742602640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = 30.994443 kcal Electronic energy + Delta-G solvation = -21051.643795 eV Core-core repulsion = 17867.662224 eV Total energy + Delta-G solvation = -3183.981571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70615 -40.54060 -38.81877 -35.92411 -34.93534 -33.18037 -32.20794 -30.23018 -29.23813 -28.07647 -27.30817 -26.51920 -24.00806 -22.82744 -21.56225 -21.12373 -19.31917 -18.59287 -17.59834 -17.41358 -16.83848 -16.23920 -15.94463 -15.73009 -15.23106 -15.09957 -14.88109 -14.82196 -14.54506 -13.97367 -13.54569 -13.48448 -13.20854 -13.00626 -12.92476 -12.86152 -12.80518 -12.59616 -12.47251 -12.08572 -11.87760 -11.83892 -11.75212 -11.44626 -10.98254 -10.81688 -10.31681 -10.11921 -10.02802 -8.46893 -8.46554 -6.23191 0.45267 1.30294 1.39618 1.57706 1.74470 2.08706 2.14962 2.40960 2.73420 2.96155 3.09624 3.65422 3.84372 4.11108 4.18691 4.24413 4.43648 4.46016 4.63415 4.66641 4.81412 4.81485 4.86764 4.95429 5.00689 5.04791 5.06009 5.08530 5.16959 5.21249 5.27325 5.30678 5.38709 5.47566 5.54237 5.69827 5.71304 5.97058 6.34603 6.74947 6.86368 7.45761 7.51567 7.70198 8.53047 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053370 B = 0.003139 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.511316 B = 8916.483560 C = 9237.899726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.016 4.016 3 C -0.232 4.232 4 C 0.521 3.479 5 O -0.575 6.575 6 N -0.617 5.617 7 C -0.042 4.042 8 C -0.061 4.061 9 N -0.311 5.311 10 N -0.169 5.169 11 C -0.355 4.355 12 H 0.141 0.859 13 C -0.008 4.008 14 N -0.826 5.826 15 Si 1.021 2.979 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.244 1.244 19 C -0.084 4.084 20 C -0.037 4.037 21 C -0.147 4.147 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.160 0.840 28 H 0.418 0.582 29 H 0.168 0.832 30 H 0.276 0.724 31 H 0.187 0.813 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.797 -17.442 2.629 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.018 4.018 3 C -0.253 4.253 4 C 0.314 3.686 5 O -0.457 6.457 6 N -0.261 5.261 7 C -0.149 4.149 8 C -0.236 4.236 9 N -0.143 5.143 10 N 0.062 4.938 11 C -0.486 4.486 12 H 0.158 0.842 13 C -0.219 4.219 14 N -0.454 5.454 15 Si 0.839 3.161 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.167 1.167 19 C -0.234 4.234 20 C -0.037 4.037 21 C -0.204 4.204 22 C -0.196 4.196 23 C -0.195 4.195 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.177 0.823 28 H 0.255 0.745 29 H 0.184 0.816 30 H 0.086 0.914 31 H 0.204 0.796 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.850 -16.541 2.240 19.382 hybrid contribution 0.555 0.369 0.071 0.670 sum 10.405 -16.172 2.311 19.368 Atomic orbital electron populations 1.21034 0.92244 1.02084 1.02328 1.22704 0.95956 0.94650 0.88469 1.22488 1.01485 0.89746 1.11535 1.19283 0.86961 0.84874 0.77532 1.90640 1.17066 1.87559 1.50421 1.42422 1.12162 1.02413 1.69121 1.17392 0.92117 0.85862 1.19488 1.24170 0.95749 0.94758 1.08964 1.78127 1.06727 1.02762 1.26683 1.44837 1.04202 1.05688 1.39107 1.20622 0.99155 0.76944 1.51857 0.84195 1.26909 0.93740 1.07153 0.94138 1.70410 1.00411 1.38626 1.35946 0.84574 0.78907 0.72944 0.79643 1.18867 1.20190 1.16683 1.21999 0.96021 0.87947 1.17474 1.19777 0.95457 0.90970 0.97504 1.22012 0.93130 1.02865 1.02437 1.21884 1.02047 1.00033 0.95656 1.21844 1.02025 0.99972 0.95633 0.91855 0.90605 0.92148 0.82282 0.74546 0.81564 0.91434 0.79592 0.91732 0.90567 0.92197 0.92354 0.90312 0.92640 0.93130 0.90156 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 7.81 71.24 0.56 -2.69 16 2 C -0.02 -0.36 4.90 -17.61 -0.09 -0.45 16 3 C -0.23 -5.89 8.97 23.43 0.21 -5.68 16 4 C 0.52 18.99 7.58 86.56 0.66 19.65 16 5 O -0.57 -25.58 10.43 -4.17 -0.04 -25.63 16 6 N -0.62 -22.49 5.46 -307.19 -1.68 -24.17 16 7 C -0.04 -2.02 6.90 37.75 0.26 -1.76 16 8 C -0.06 -3.47 10.85 85.42 0.93 -2.54 16 9 N -0.31 -19.35 10.39 -56.46 -0.59 -19.93 16 10 N -0.17 -9.67 3.74 -190.00 -0.71 -10.38 16 11 C -0.35 -19.23 10.25 84.02 0.86 -18.37 16 12 H 0.14 6.56 7.83 -2.91 -0.02 6.54 16 13 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 14 N -0.83 -48.75 11.81 21.66 0.26 -48.50 16 15 Si 1.02 39.31 29.55 68.60 2.03 41.33 16 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 17 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.24 -8.49 7.11 99.48 0.71 -7.78 16 19 C -0.08 -4.04 11.50 83.38 0.96 -3.08 16 20 C -0.04 -0.57 0.87 -52.93 -0.05 -0.62 16 21 C -0.15 -1.83 7.14 71.98 0.51 -1.32 16 22 C -0.14 -1.83 8.31 71.98 0.60 -1.23 16 23 C -0.14 -1.95 8.31 71.98 0.60 -1.35 16 24 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 25 H 0.08 1.59 6.65 -2.38 -0.02 1.58 16 26 H 0.06 2.05 6.12 -2.38 -0.01 2.03 16 27 H 0.16 2.92 5.78 -2.91 -0.02 2.90 16 28 H 0.42 11.25 8.81 -92.71 -0.82 10.43 16 29 H 0.17 9.51 5.91 -2.91 -0.02 9.50 16 30 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.19 7.04 8.06 -2.91 -0.02 7.02 16 32 H 0.06 0.77 7.39 -2.39 -0.02 0.75 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.78 7.61 -2.39 -0.02 0.77 16 35 H 0.06 0.79 6.80 -2.39 -0.02 0.78 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.84 7.76 -2.39 -0.02 0.83 16 Total: -1.00 -76.45 327.37 5.98 -70.48 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.24 Total: 36.21 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 6.47 Total: -19.41 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -2.72 Total: -102.98 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.63 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.33 kcal Total: -76.45 5.98 -70.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742602640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.470 kcal (2) G-P(sol) polarization free energy of solvation -76.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds