Wall clock time and date at job start Mon Mar 30 2020 01:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35857 * 126.17699 * 2 1 4 4 N 1.30174 * 109.10606 * 179.97438 * 3 2 1 5 5 C 1.35800 * 109.01774 * 359.97438 * 4 3 2 6 6 C 1.46780 * 126.24152 * 179.97438 * 5 4 3 7 7 C 1.35180 * 120.00274 * 6.66928 * 6 5 4 8 8 C 1.41746 * 120.00091 * 23.73384 * 7 6 5 9 9 O 1.21750 * 120.00174 * 7.19203 * 8 7 6 10 10 N 1.34780 * 119.99664 * 186.92263 * 8 7 6 11 11 C 1.46499 * 119.99747 * 180.27334 * 10 8 7 12 12 C 1.52999 * 109.47327 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47154 * 300.00313 * 12 11 10 14 14 C 1.52998 * 109.46770 * 60.00021 * 12 11 10 15 15 C 1.50694 * 109.47300 * 180.02562 * 12 11 10 16 16 H 1.08004 * 120.00380 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00158 * 180.02562 * 15 12 11 18 18 N 1.31520 * 119.99594 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00372 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47050 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47117 * 210.00235 * 19 17 15 22 22 H 1.48507 * 109.46822 * 329.99799 * 19 17 15 23 23 C 1.36051 * 126.18001 * 180.26312 * 2 1 3 24 24 H 1.09001 * 109.46748 * 89.97935 * 1 2 3 25 25 H 1.09000 * 109.47337 * 209.97651 * 1 2 3 26 26 H 1.08998 * 109.47152 * 329.97811 * 1 2 3 27 27 H 1.08000 * 125.44274 * 359.96009 * 3 2 1 28 28 H 1.08007 * 119.99769 * 186.66114 * 6 5 4 29 29 H 1.08003 * 119.99551 * 203.73594 * 7 6 5 30 30 H 0.96999 * 120.00369 * 0.27113 * 10 8 7 31 31 H 1.08997 * 109.47614 * 300.00032 * 11 10 8 32 32 H 1.09001 * 109.47355 * 59.99712 * 11 10 8 33 33 H 1.09000 * 109.47238 * 59.99487 * 13 12 11 34 34 H 1.08999 * 109.46964 * 179.97438 * 13 12 11 35 35 H 1.09001 * 109.46733 * 300.00104 * 13 12 11 36 36 H 1.09001 * 109.47335 * 60.00521 * 14 12 11 37 37 H 1.09005 * 109.46923 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.47554 * 300.00249 * 14 12 11 39 39 H 0.97004 * 119.99560 * 180.02562 * 18 17 15 40 40 H 1.08003 * 126.63640 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2670 1.0966 0.0000 4 7 3.5114 0.7145 0.0006 5 6 3.5575 -0.6427 0.0015 6 6 4.7701 -1.4697 0.0018 7 6 5.9838 -0.8899 0.1371 8 6 6.0983 0.3765 0.7635 9 8 5.1272 0.8826 1.2954 10 7 7.2837 1.0178 0.7748 11 6 7.4036 2.3239 1.4274 12 6 8.8422 2.8285 1.2982 13 6 9.7933 1.8346 1.9679 14 6 9.2045 2.9629 -0.1822 15 6 8.9657 4.1718 1.9700 16 1 8.1043 4.6206 2.4423 17 6 10.1783 4.8279 1.9818 18 7 11.2271 4.2816 1.4062 19 14 10.3315 6.4927 2.8152 20 1 10.7030 6.3006 4.2400 21 1 11.3806 7.2927 2.1335 22 1 9.0327 7.2081 2.7343 23 6 2.2682 -1.0981 -0.0050 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5142 27 1 1.9264 2.1215 -0.0006 28 1 4.6927 -2.5416 -0.1059 29 1 6.8660 -1.3916 -0.2321 30 1 8.0574 0.6146 0.3510 31 1 6.7257 3.0319 0.9506 32 1 7.1458 2.2282 2.4821 33 1 9.7041 0.8628 1.4823 34 1 10.8183 2.1939 1.8754 35 1 9.5351 1.7388 3.0225 36 1 8.5269 3.6710 -0.6593 37 1 10.2296 3.3219 -0.2742 38 1 9.1153 1.9911 -0.6678 39 1 12.0803 4.7430 1.4148 40 1 1.9491 -2.1300 -0.0102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822398993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:35 Heat of formation + Delta-G solvation = 49.795138 kcal Electronic energy + Delta-G solvation = -21302.123017 eV Core-core repulsion = 18118.956705 eV Total energy + Delta-G solvation = -3183.166311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.68304 -40.47524 -38.08496 -35.36704 -34.67026 -33.58008 -32.55305 -30.18388 -27.88367 -27.54883 -27.36693 -26.71534 -24.18298 -22.00681 -21.82994 -20.50799 -19.88685 -18.49916 -17.79319 -17.15605 -16.69509 -16.43202 -16.12432 -15.94990 -15.39387 -14.89814 -14.76863 -14.53709 -14.25307 -14.01533 -13.83522 -13.69691 -13.41642 -13.18931 -13.10051 -12.92195 -12.64865 -12.57880 -12.22466 -12.12465 -11.46245 -11.22608 -11.00049 -10.72560 -10.64140 -10.56810 -10.38259 -9.90030 -9.42474 -8.69869 -8.01006 -6.17074 0.07150 1.36362 1.42372 1.43880 1.53506 2.05177 2.44616 2.61351 2.85796 2.91251 3.21551 3.79053 3.96565 4.13159 4.31948 4.37848 4.48749 4.50244 4.57731 4.63129 4.74594 4.75476 4.81259 5.04887 5.08541 5.15753 5.22350 5.32965 5.38077 5.43193 5.57009 5.67240 5.68567 5.84959 5.97642 6.16284 6.24131 6.39624 6.46033 6.87064 7.03912 7.36372 7.50221 7.79681 8.98129 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.003649 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.699857 B = 7670.823437 C = 8322.607112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.465 5.465 3 C 0.143 3.857 4 N -0.460 5.460 5 C -0.053 4.053 6 C 0.032 3.968 7 C -0.247 4.247 8 C 0.519 3.481 9 O -0.547 6.547 10 N -0.721 5.721 11 C 0.160 3.840 12 C 0.052 3.948 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.530 4.530 16 H 0.040 0.960 17 C 0.027 3.973 18 N -0.900 5.900 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.277 1.277 23 C 0.002 3.998 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.212 0.788 28 H 0.186 0.814 29 H 0.156 0.844 30 H 0.401 0.599 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.929 -14.944 -5.635 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.147 5.147 3 C -0.140 4.140 4 N -0.178 5.178 5 C -0.179 4.179 6 C 0.011 3.989 7 C -0.270 4.270 8 C 0.311 3.689 9 O -0.426 6.426 10 N -0.374 5.374 11 C 0.035 3.965 12 C 0.052 3.948 13 C -0.176 4.176 14 C -0.175 4.175 15 C -0.569 4.569 16 H 0.059 0.941 17 C -0.173 4.173 18 N -0.539 5.539 19 Si 0.774 3.226 20 H -0.203 1.203 21 H -0.205 1.205 22 H -0.202 1.202 23 C -0.136 4.136 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.114 0.886 27 H 0.228 0.772 28 H 0.203 0.797 29 H 0.173 0.827 30 H 0.237 0.763 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -18.900 -13.964 -5.276 24.084 hybrid contribution 0.030 0.854 0.484 0.982 sum -18.870 -13.110 -4.792 23.472 Atomic orbital electron populations 1.22362 0.73885 1.06170 1.04936 1.45786 1.09255 1.06097 1.53592 1.25662 0.85762 0.94711 1.07901 1.71158 1.19207 1.12615 1.14773 1.20153 0.93957 0.90223 1.13605 1.22085 0.88465 0.99032 0.89271 1.22090 1.00485 0.96997 1.07380 1.17871 0.82324 0.86501 0.82232 1.90820 1.36752 1.68478 1.46520 1.46093 1.12282 1.20734 1.58318 1.20999 0.97994 0.83238 0.94243 1.18332 0.89106 0.93762 0.93635 1.21647 1.02303 0.96352 0.97301 1.21636 1.01935 0.97661 0.96258 1.21295 0.95470 1.04178 1.35960 0.94121 1.25490 0.95491 1.00498 0.95791 1.69921 1.00656 1.38999 1.44313 0.85722 0.77568 0.80582 0.78723 1.20320 1.20520 1.20186 1.23429 0.89789 0.94230 1.06106 0.89026 0.87698 0.88576 0.77165 0.79694 0.82655 0.76279 0.95742 0.95599 0.94503 0.91786 0.96545 0.96782 0.91752 0.94677 0.92981 0.76242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.16 127.77 1.43 1.93 16 2 N -0.46 -8.84 3.14 -550.91 -1.73 -10.57 16 3 C 0.14 3.97 12.55 180.10 2.26 6.23 16 4 N -0.46 -16.89 7.30 -189.04 -1.38 -18.27 16 5 C -0.05 -1.55 6.18 40.41 0.25 -1.30 16 6 C 0.03 0.78 10.07 23.80 0.24 1.02 16 7 C -0.25 -7.27 9.80 22.43 0.22 -7.05 16 8 C 0.52 20.98 7.17 85.11 0.61 21.59 16 9 O -0.55 -26.06 12.27 -4.51 -0.06 -26.12 16 10 N -0.72 -29.54 4.95 -472.03 -2.34 -31.88 16 11 C 0.16 7.79 4.50 86.38 0.39 8.18 16 12 C 0.05 2.65 0.50 -52.93 -0.03 2.63 16 13 C -0.12 -5.71 8.08 71.98 0.58 -5.13 16 14 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 15 C -0.53 -30.15 8.01 25.60 0.21 -29.95 16 16 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 17 C 0.03 1.49 5.15 84.65 0.44 1.92 16 18 N -0.90 -50.24 9.35 21.45 0.20 -50.04 16 19 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 23 C 0.00 0.04 11.53 83.69 0.96 1.01 16 24 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.21 4.77 8.06 -2.91 -0.02 4.75 16 28 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.40 14.53 6.12 -92.71 -0.57 13.96 16 31 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.51 6.86 -2.39 -0.02 1.50 16 34 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 3.40 6.07 -2.38 -0.01 3.39 16 38 H 0.03 1.47 6.86 -2.39 -0.02 1.45 16 39 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 40 H 0.22 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -79.30 327.91 5.33 -73.98 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.47 Total: 20.40 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 8.14 Total: -4.06 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -5.25 Total: -110.76 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.06 Total: -26.12 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -79.30 5.33 -73.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.771 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds