Wall clock time and date at job start Mon Mar 30 2020 02:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46971 * 2 1 4 4 H 1.09008 * 110.05676 * 306.69965 * 3 2 1 5 5 C 1.54267 * 110.03752 * 68.11971 * 3 2 1 6 6 C 1.54882 * 104.19614 * 142.89517 * 5 3 2 7 7 C 1.54895 * 102.75071 * 322.05619 * 6 5 3 8 8 C 1.53876 * 110.03066 * 185.28918 * 3 2 1 9 9 H 1.08997 * 110.03814 * 121.38107 * 8 3 2 10 10 C 1.50700 * 110.03051 * 359.97438 * 8 3 2 11 11 O 1.21304 * 120.00025 * 273.61945 * 10 8 3 12 12 N 1.34774 * 119.99641 * 93.62970 * 10 8 3 13 13 C 1.40598 * 119.99959 * 179.97438 * 12 10 8 14 14 C 1.40645 * 126.07929 * 359.69041 * 13 12 10 15 15 N 1.30914 * 108.38761 * 180.26278 * 14 13 12 16 16 N 1.40062 * 108.40560 * 359.97438 * 15 14 13 17 17 C 1.37325 * 126.06991 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99867 * 180.02562 * 17 16 15 19 19 C 1.38982 * 119.99702 * 0.02562 * 17 16 15 20 20 N 1.31290 * 120.00381 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47136 * 120.00100 * 21 19 17 24 24 H 1.48498 * 109.47239 * 240.00700 * 21 19 17 25 25 C 1.35678 * 126.08412 * 179.97438 * 13 12 10 26 26 H 1.08996 * 109.47383 * 300.00495 * 1 2 3 27 27 H 1.08998 * 109.47277 * 60.00627 * 1 2 3 28 28 H 1.09001 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47181 * 239.99028 * 2 1 3 30 30 H 1.09000 * 109.46585 * 119.99644 * 2 1 3 31 31 H 1.08998 * 110.48531 * 261.57246 * 5 3 2 32 32 H 1.08999 * 110.48254 * 24.08025 * 5 3 2 33 33 H 1.08999 * 110.76048 * 80.37501 * 6 5 3 34 34 H 1.09003 * 110.75419 * 203.74539 * 6 5 3 35 35 H 1.08997 * 110.48248 * 279.26709 * 7 6 5 36 36 H 1.09002 * 110.48655 * 156.62164 * 7 6 5 37 37 H 0.97001 * 120.00696 * 359.97438 * 12 10 8 38 38 H 1.08000 * 125.81002 * 0.23511 * 14 13 12 39 39 H 0.96998 * 120.00495 * 179.97438 * 20 19 17 40 40 H 1.08001 * 126.24563 * 359.77783 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5876 1.9989 -0.8210 5 6 1.7069 2.1208 1.3449 6 6 2.9366 3.0174 1.6328 7 6 4.1178 2.1477 1.1353 8 6 3.5729 1.4596 -0.1333 9 1 3.8644 2.0235 -1.0193 10 6 4.0990 0.0502 -0.2220 11 8 4.3401 -0.5722 0.7909 12 7 4.3020 -0.5186 -1.4269 13 6 4.7934 -1.8333 -1.5098 14 6 5.1204 -2.6653 -0.4240 15 7 5.5485 -3.8094 -0.8948 16 7 5.5115 -3.7537 -2.2938 17 6 5.8830 -4.7584 -3.1531 18 1 5.8146 -4.6088 -4.2205 19 6 6.3469 -5.9677 -2.6491 20 7 6.4296 -6.1497 -1.3515 21 14 6.8529 -7.3342 -3.8180 22 1 6.6668 -6.8806 -5.2198 23 1 8.2810 -7.6740 -3.5936 24 1 6.0136 -8.5338 -3.5699 25 6 5.0417 -2.5231 -2.6515 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.8058 2.7271 1.2535 32 1 1.5850 1.3736 2.1291 33 1 2.8772 3.9477 1.0680 34 1 3.0272 3.2175 2.7005 35 1 4.3875 1.4051 1.8863 36 1 4.9761 2.7737 0.8910 37 1 4.1091 -0.0211 -2.2369 38 1 5.0335 -2.4047 0.6204 39 1 6.7530 -6.9938 -0.9997 40 1 4.8948 -2.1639 -3.6593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822880148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:41 Heat of formation + Delta-G solvation = 4.014502 kcal Electronic energy + Delta-G solvation = -21694.572231 eV Core-core repulsion = 18509.420723 eV Total energy + Delta-G solvation = -3185.151509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87053 -40.88294 -38.34464 -35.88148 -34.94127 -34.01395 -32.26911 -30.73346 -29.15307 -28.43726 -26.75141 -23.90242 -23.20406 -22.65107 -21.43170 -21.22365 -20.14804 -19.18532 -17.65694 -17.38680 -17.15198 -16.59695 -15.94328 -15.86637 -15.45427 -15.32537 -14.97239 -14.81085 -14.48193 -14.12990 -13.51497 -13.43050 -13.28041 -12.97374 -12.90369 -12.84289 -12.41120 -12.19755 -12.03102 -11.87786 -11.81871 -11.72458 -11.43800 -11.42268 -11.30338 -10.96992 -10.81926 -10.46023 -10.09429 -8.49615 -8.46996 -6.23966 1.23290 1.39325 1.56883 1.58557 1.89296 2.07229 2.36797 2.55417 2.93905 3.09055 3.56784 3.68761 3.78153 4.16657 4.24001 4.40912 4.44233 4.44835 4.57806 4.62746 4.64795 4.71785 4.81765 4.82530 4.90671 5.00514 5.08183 5.11581 5.17023 5.22102 5.26573 5.30424 5.31456 5.40519 5.49025 5.53503 5.60889 5.96782 6.33967 6.74805 6.83967 7.45658 7.51526 7.70276 8.52809 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036743 B = 0.003793 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.861240 B = 7380.280291 C = 7611.640481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C -0.069 4.069 4 H 0.110 0.890 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.100 4.100 9 H 0.121 0.879 10 C 0.509 3.491 11 O -0.580 6.580 12 N -0.621 5.621 13 C -0.040 4.040 14 C -0.062 4.062 15 N -0.311 5.311 16 N -0.169 5.169 17 C -0.355 4.355 18 H 0.141 0.859 19 C -0.007 4.007 20 N -0.827 5.827 21 Si 1.020 2.980 22 H -0.240 1.240 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.084 4.084 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.417 0.583 38 H 0.163 0.837 39 H 0.276 0.724 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 17.452 -2.582 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.088 4.088 4 H 0.128 0.872 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.122 4.122 9 H 0.139 0.861 10 C 0.298 3.702 11 O -0.459 6.459 12 N -0.266 5.266 13 C -0.146 4.146 14 C -0.237 4.237 15 N -0.144 5.144 16 N 0.062 4.938 17 C -0.486 4.486 18 H 0.158 0.842 19 C -0.219 4.219 20 N -0.455 5.455 21 Si 0.839 3.161 22 H -0.163 1.163 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.234 4.234 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.254 0.746 38 H 0.180 0.820 39 H 0.085 0.915 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.476 15.724 -1.418 17.919 hybrid contribution 0.130 -0.202 -0.497 0.552 sum -8.347 15.522 -1.915 17.728 Atomic orbital electron populations 1.21713 0.94050 1.01305 1.02902 1.21776 0.97547 0.96866 1.00609 1.21775 0.91273 0.95462 1.00271 0.87197 1.22449 0.99075 0.98339 0.95535 1.22466 0.92932 0.98156 1.01525 1.22385 0.99230 0.98507 0.95430 1.22126 0.97414 0.90234 1.02410 0.86060 1.21216 0.76875 0.89927 0.82133 1.90559 1.53172 1.65449 1.36740 1.42669 1.63307 1.11278 1.09319 1.17376 1.15985 0.88721 0.92518 1.24100 1.07208 0.92697 0.99686 1.78133 1.26576 1.20698 0.88976 1.44830 1.36046 1.08929 1.04018 1.20659 1.45234 0.92399 0.90280 0.84185 1.26890 0.95158 1.01542 0.98265 1.70412 1.35688 1.25229 1.14155 0.84530 0.77847 0.75635 0.78124 1.16258 1.19779 1.19785 1.21998 1.14061 0.88440 0.98883 0.91593 0.90922 0.94166 0.93408 0.94783 0.89164 0.93329 0.88975 0.91104 0.93062 0.90223 0.74591 0.81978 0.91473 0.79633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.77 71.98 0.70 -2.26 16 2 C -0.13 -3.45 4.12 30.59 0.13 -3.32 16 3 C -0.07 -1.34 2.92 -10.07 -0.03 -1.37 16 4 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 5 C -0.12 -2.03 5.55 31.67 0.18 -1.85 16 6 C -0.11 -1.80 6.91 31.88 0.22 -1.58 16 7 C -0.12 -2.61 6.31 31.67 0.20 -2.41 16 8 C -0.10 -2.27 3.29 -10.81 -0.04 -2.30 16 9 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 10 C 0.51 17.58 4.65 87.66 0.41 17.99 16 11 O -0.58 -25.89 12.18 -3.10 -0.04 -25.92 16 12 N -0.62 -21.62 4.91 -303.93 -1.49 -23.11 16 13 C -0.04 -1.87 6.90 37.73 0.26 -1.61 16 14 C -0.06 -3.48 10.85 85.42 0.93 -2.56 16 15 N -0.31 -19.35 10.40 -56.47 -0.59 -19.94 16 16 N -0.17 -9.60 3.74 -190.02 -0.71 -10.31 16 17 C -0.35 -19.15 10.25 84.01 0.86 -18.29 16 18 H 0.14 6.55 7.83 -2.91 -0.02 6.53 16 19 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 20 N -0.83 -48.81 11.81 21.66 0.26 -48.55 16 21 Si 1.02 39.26 29.55 68.60 2.03 41.28 16 22 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16 23 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 25 C -0.08 -3.95 11.49 83.37 0.96 -3.00 16 26 H 0.07 1.19 7.52 -2.39 -0.02 1.18 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.44 6.79 -2.39 -0.02 1.42 16 30 H 0.03 1.16 7.12 -2.39 -0.02 1.14 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.53 6.88 -2.39 -0.02 1.51 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.42 10.60 8.83 -92.71 -0.82 9.78 16 38 H 0.16 9.35 5.92 -2.91 -0.02 9.34 16 39 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.19 6.91 8.06 -2.91 -0.02 6.89 16 Total: -1.00 -77.60 322.58 4.93 -72.67 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.23 Total: 36.37 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 5.24 Total: -22.49 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -2.53 Total: -101.91 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.92 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.28 kcal Total: -77.60 4.93 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822880148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.686 kcal (2) G-P(sol) polarization free energy of solvation -77.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds