Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47051 * 2 1 4 4 H 1.08999 * 110.01499 * 55.84809 * 3 2 1 5 5 C 1.54266 * 110.03234 * 294.46041 * 3 2 1 6 6 C 1.54887 * 104.31383 * 217.04042 * 5 3 2 7 7 C 1.55234 * 102.58647 * 37.92785 * 6 5 3 8 8 C 1.53863 * 110.03237 * 177.29019 * 3 2 1 9 9 H 1.08996 * 110.03579 * 238.56756 * 8 3 2 10 10 C 1.50704 * 110.03574 * 359.95324 * 8 3 2 11 11 O 1.21304 * 119.99944 * 86.84134 * 10 8 3 12 12 N 1.34781 * 119.99738 * 266.84925 * 10 8 3 13 13 C 1.40595 * 119.99663 * 179.97438 * 12 10 8 14 14 C 1.40648 * 126.08319 * 0.02562 * 13 12 10 15 15 N 1.30911 * 108.38623 * 180.02562 * 14 13 12 16 16 N 1.40068 * 108.40507 * 0.02562 * 15 14 13 17 17 C 1.37325 * 126.06495 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.38984 * 120.00205 * 0.02562 * 17 16 15 20 20 N 1.31295 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99990 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46968 * 119.99917 * 21 19 17 24 24 H 1.48494 * 109.47070 * 240.00615 * 21 19 17 25 25 C 1.35681 * 126.07761 * 179.71184 * 13 12 10 26 26 H 1.09002 * 109.47066 * 299.99907 * 1 2 3 27 27 H 1.08992 * 109.47398 * 59.99656 * 1 2 3 28 28 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47066 * 240.00093 * 2 1 3 30 30 H 1.09002 * 109.47038 * 119.99644 * 2 1 3 31 31 H 1.09004 * 110.48562 * 335.78019 * 5 3 2 32 32 H 1.09000 * 110.48888 * 98.28970 * 5 3 2 33 33 H 1.08998 * 110.75898 * 156.32136 * 6 5 3 34 34 H 1.09004 * 110.75382 * 279.69584 * 6 5 3 35 35 H 1.09001 * 110.47220 * 203.39934 * 7 6 5 36 36 H 1.09000 * 110.58399 * 80.83654 * 7 6 5 37 37 H 0.97000 * 119.99632 * 359.97438 * 12 10 8 38 38 H 1.07997 * 125.80640 * 0.03060 * 14 13 12 39 39 H 0.96991 * 119.99774 * 179.97438 * 20 19 17 40 40 H 1.07998 * 126.24903 * 359.96058 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6223 1.9859 0.8475 5 6 1.6504 2.1408 -1.3193 6 6 2.8648 3.0443 -1.6475 7 6 4.0679 2.1654 -1.2118 8 6 3.5771 1.4582 0.0683 9 1 3.9061 2.0097 0.9490 10 6 4.1062 0.0479 0.1154 11 8 4.3117 -0.5575 -0.9155 12 7 4.3508 -0.5408 1.3029 13 6 4.8439 -1.8567 1.3467 14 6 5.1268 -2.6728 0.2367 15 7 5.5664 -3.8260 0.6732 16 7 5.5809 -3.7924 2.0734 17 6 5.9778 -4.8126 2.9025 18 1 5.9486 -4.6800 3.9740 19 6 6.4171 -6.0157 2.3629 20 7 6.4531 -6.1767 1.0603 21 14 6.9563 -7.4038 3.4907 22 1 6.8210 -6.9730 4.9055 23 1 6.1022 -8.5951 3.2527 24 1 8.3737 -7.7468 3.2108 25 6 5.1371 -2.5632 2.4674 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4974 1.4056 -2.1093 32 1 0.7527 2.7435 -1.1813 33 1 2.9079 3.2609 -2.7149 34 1 2.8290 3.9658 -1.0664 35 1 4.9360 2.7878 -0.9948 36 1 4.3076 1.4340 -1.9837 37 1 4.1866 -0.0566 2.1272 38 1 5.0027 -2.3951 -0.7996 39 1 6.7600 -7.0162 0.6837 40 1 5.0348 -2.2173 3.4854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822880151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = 24.876943 kcal Electronic energy + Delta-G solvation = -21694.765939 eV Core-core repulsion = 18510.519093 eV Total energy + Delta-G solvation = -3184.246845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33457 -39.21368 -37.09928 -34.14469 -33.16618 -32.97037 -30.29028 -29.47704 -27.60347 -27.36694 -24.82192 -22.86627 -21.84333 -20.77548 -20.50629 -19.39861 -18.80325 -17.41236 -16.31192 -16.02825 -15.41811 -15.09217 -14.67384 -14.56426 -14.19588 -13.83573 -13.28381 -13.26266 -13.10436 -12.87480 -12.38715 -11.96535 -11.69161 -11.43599 -11.37475 -11.27036 -11.20628 -11.03297 -10.90716 -10.79360 -10.61073 -10.49409 -10.45845 -10.42676 -9.98651 -9.11826 -8.99747 -8.75043 -8.01377 -6.63808 -6.52657 -4.19171 2.89123 3.06664 3.08418 3.12511 3.68021 3.72387 3.92323 4.44384 4.49744 4.63644 4.68274 4.88775 5.05296 5.18692 5.23988 5.34059 5.38154 5.51385 5.54974 5.59215 5.63172 5.72924 5.84837 5.87844 6.03988 6.08034 6.15790 6.23573 6.28509 6.36116 6.42115 6.50321 6.55611 6.95983 7.01961 7.19598 7.30361 7.90154 8.25725 8.35802 8.69020 8.96512 9.42287 9.71906 10.43540 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.003793 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.239643 B = 7380.713386 C = 7609.211979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.074 4.074 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.107 4.107 9 H 0.084 0.916 10 C 0.512 3.488 11 O -0.536 6.536 12 N -0.628 5.628 13 C -0.057 4.057 14 C -0.034 4.034 15 N -0.261 5.261 16 N -0.144 5.144 17 C -0.324 4.324 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.771 5.771 21 Si 0.934 3.066 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.086 4.086 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.175 0.825 39 H 0.274 0.726 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 14.837 0.505 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.093 4.093 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.150 4.150 8 C -0.129 4.129 9 H 0.103 0.897 10 C 0.298 3.702 11 O -0.414 6.414 12 N -0.270 5.270 13 C -0.162 4.162 14 C -0.210 4.210 15 N -0.092 5.092 16 N 0.088 4.912 17 C -0.456 4.456 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.398 5.398 21 Si 0.758 3.242 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.236 4.236 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.228 0.772 38 H 0.192 0.808 39 H 0.084 0.916 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.325 13.059 -0.732 14.991 hybrid contribution -0.122 0.478 1.399 1.484 sum -7.447 13.537 0.667 15.465 Atomic orbital electron populations 1.21747 0.95984 1.01529 1.01218 1.21848 0.95812 0.95602 1.03692 1.21694 0.92371 0.96813 0.98455 0.90663 1.22438 0.97554 0.98367 0.97087 1.22534 0.94869 0.97795 1.00868 1.22408 0.97398 0.98559 0.96669 1.21975 0.96577 0.93819 1.00549 0.89725 1.20165 0.78437 0.88140 0.83438 1.90565 1.52581 1.64886 1.33324 1.42663 1.63368 1.13118 1.07849 1.17300 1.18062 0.86849 0.94030 1.24093 1.05865 0.91975 0.99019 1.78242 1.24538 1.18836 0.87592 1.44536 1.35045 1.07159 1.04475 1.19900 1.44673 0.91373 0.89644 0.86673 1.25628 0.96059 0.99010 0.96369 1.70228 1.34358 1.24775 1.10401 0.85781 0.78674 0.79972 0.79806 1.18727 1.19941 1.19937 1.21263 1.15929 0.89468 0.96977 0.93153 0.92869 0.92850 0.90609 0.91357 0.91152 0.91851 0.91488 0.91738 0.91714 0.89389 0.77242 0.80803 0.91582 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.74 37.16 0.36 -1.29 16 2 C -0.13 -1.78 4.11 -26.73 -0.11 -1.89 16 3 C -0.07 -0.83 2.95 -89.50 -0.26 -1.10 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.12 -1.18 5.41 -25.07 -0.14 -1.31 16 6 C -0.12 -1.17 6.93 -24.55 -0.17 -1.35 16 7 C -0.11 -1.34 6.32 -24.88 -0.16 -1.50 16 8 C -0.11 -1.34 3.29 -90.66 -0.30 -1.64 16 9 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 10 C 0.51 8.84 4.68 -10.98 -0.05 8.79 16 11 O -0.54 -11.35 12.13 5.54 0.07 -11.28 16 12 N -0.63 -11.20 4.93 -10.00 -0.05 -11.25 16 13 C -0.06 -1.32 6.90 -83.84 -0.58 -1.90 16 14 C -0.03 -0.91 10.85 -17.04 -0.18 -1.09 16 15 N -0.26 -7.70 10.40 30.80 0.32 -7.38 16 16 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 17 C -0.32 -8.68 10.25 -14.81 -0.15 -8.83 16 18 H 0.12 2.77 7.83 -52.48 -0.41 2.36 16 19 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 20 N -0.77 -21.82 11.81 55.49 0.66 -21.17 16 21 Si 0.93 19.14 29.55 -169.99 -5.02 14.12 16 22 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.09 -2.04 11.49 -16.39 -0.19 -2.23 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.54 7.43 -51.93 -0.39 0.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.24 7.03 -51.93 -0.37 0.87 16 30 H 0.07 1.03 6.95 -51.93 -0.36 0.67 16 31 H 0.07 0.79 7.80 -51.93 -0.40 0.38 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.27 6.88 -51.93 -0.36 0.92 16 37 H 0.39 5.54 8.83 -40.82 -0.36 5.18 16 38 H 0.18 4.62 5.92 -52.49 -0.31 4.31 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -32.62 322.48 -7.13 -39.75 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.90 Total: 10.63 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.02 Total: -14.23 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.88 Total: -43.84 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.62 -7.13 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822880151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.627 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds