Wall clock time and date at job start Mon Mar 30 2020 02:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47051 * 2 1 4 4 H 1.08999 * 110.01499 * 55.84809 * 3 2 1 5 5 C 1.54266 * 110.03234 * 294.46041 * 3 2 1 6 6 C 1.54887 * 104.31383 * 217.04042 * 5 3 2 7 7 C 1.55234 * 102.58647 * 37.92785 * 6 5 3 8 8 C 1.53863 * 110.03237 * 177.29019 * 3 2 1 9 9 H 1.08996 * 110.03579 * 238.56756 * 8 3 2 10 10 C 1.50704 * 110.03574 * 359.95324 * 8 3 2 11 11 O 1.21304 * 119.99944 * 86.84134 * 10 8 3 12 12 N 1.34781 * 119.99738 * 266.84925 * 10 8 3 13 13 C 1.40595 * 119.99663 * 179.97438 * 12 10 8 14 14 C 1.40648 * 126.08319 * 0.02562 * 13 12 10 15 15 N 1.30911 * 108.38623 * 180.02562 * 14 13 12 16 16 N 1.40068 * 108.40507 * 0.02562 * 15 14 13 17 17 C 1.37325 * 126.06495 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99408 * 180.02562 * 17 16 15 19 19 C 1.38984 * 120.00205 * 0.02562 * 17 16 15 20 20 N 1.31295 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99990 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46968 * 119.99917 * 21 19 17 24 24 H 1.48494 * 109.47070 * 240.00615 * 21 19 17 25 25 C 1.35681 * 126.07761 * 179.71184 * 13 12 10 26 26 H 1.09002 * 109.47066 * 299.99907 * 1 2 3 27 27 H 1.08992 * 109.47398 * 59.99656 * 1 2 3 28 28 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47066 * 240.00093 * 2 1 3 30 30 H 1.09002 * 109.47038 * 119.99644 * 2 1 3 31 31 H 1.09004 * 110.48562 * 335.78019 * 5 3 2 32 32 H 1.09000 * 110.48888 * 98.28970 * 5 3 2 33 33 H 1.08998 * 110.75898 * 156.32136 * 6 5 3 34 34 H 1.09004 * 110.75382 * 279.69584 * 6 5 3 35 35 H 1.09001 * 110.47220 * 203.39934 * 7 6 5 36 36 H 1.09000 * 110.58399 * 80.83654 * 7 6 5 37 37 H 0.97000 * 119.99632 * 359.97438 * 12 10 8 38 38 H 1.07997 * 125.80640 * 0.03060 * 14 13 12 39 39 H 0.96991 * 119.99774 * 179.97438 * 20 19 17 40 40 H 1.07998 * 126.24903 * 359.96058 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6223 1.9859 0.8475 5 6 1.6504 2.1408 -1.3193 6 6 2.8648 3.0443 -1.6475 7 6 4.0679 2.1654 -1.2118 8 6 3.5771 1.4582 0.0683 9 1 3.9061 2.0097 0.9490 10 6 4.1062 0.0479 0.1154 11 8 4.3117 -0.5575 -0.9155 12 7 4.3508 -0.5408 1.3029 13 6 4.8439 -1.8567 1.3467 14 6 5.1268 -2.6728 0.2367 15 7 5.5664 -3.8260 0.6732 16 7 5.5809 -3.7924 2.0734 17 6 5.9778 -4.8126 2.9025 18 1 5.9486 -4.6800 3.9740 19 6 6.4171 -6.0157 2.3629 20 7 6.4531 -6.1767 1.0603 21 14 6.9563 -7.4038 3.4907 22 1 6.8210 -6.9730 4.9055 23 1 6.1022 -8.5951 3.2527 24 1 8.3737 -7.7468 3.2108 25 6 5.1371 -2.5632 2.4674 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4974 1.4056 -2.1093 32 1 0.7527 2.7435 -1.1813 33 1 2.9079 3.2609 -2.7149 34 1 2.8290 3.9658 -1.0664 35 1 4.9360 2.7878 -0.9948 36 1 4.3076 1.4340 -1.9837 37 1 4.1866 -0.0566 2.1272 38 1 5.0027 -2.3951 -0.7996 39 1 6.7600 -7.0162 0.6837 40 1 5.0348 -2.2173 3.4854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822880151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:49 Heat of formation + Delta-G solvation = 3.930185 kcal Electronic energy + Delta-G solvation = -21695.674258 eV Core-core repulsion = 18510.519093 eV Total energy + Delta-G solvation = -3185.155165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86789 -40.87913 -38.34012 -35.88132 -34.93993 -34.00053 -32.26933 -30.73894 -29.15538 -28.41310 -26.75205 -23.91994 -23.20662 -22.65179 -21.41939 -21.22375 -20.14433 -19.18319 -17.65358 -17.38630 -17.15911 -16.60365 -15.94291 -15.84991 -15.45076 -15.33230 -14.97570 -14.81206 -14.48367 -14.13366 -13.51465 -13.40864 -13.27831 -12.97652 -12.90597 -12.84318 -12.41822 -12.19800 -12.03102 -11.87249 -11.81073 -11.73333 -11.43235 -11.42030 -11.30564 -10.97000 -10.81934 -10.45994 -10.09448 -8.49598 -8.47019 -6.23955 1.23268 1.39326 1.56856 1.58557 1.89281 2.07220 2.36755 2.55417 2.93863 3.09050 3.56831 3.68691 3.78333 4.16540 4.23977 4.40798 4.44129 4.44691 4.57886 4.62775 4.64891 4.72251 4.81422 4.82168 4.90493 5.00496 5.08294 5.11567 5.16756 5.22030 5.26495 5.30445 5.31564 5.40891 5.48992 5.53473 5.60943 5.96787 6.33969 6.74809 6.83924 7.45655 7.51523 7.70253 8.52805 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.003793 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.239643 B = 7380.713386 C = 7609.211979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C -0.069 4.069 4 H 0.110 0.890 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.100 4.100 9 H 0.121 0.879 10 C 0.509 3.491 11 O -0.580 6.580 12 N -0.621 5.621 13 C -0.040 4.040 14 C -0.062 4.062 15 N -0.311 5.311 16 N -0.169 5.169 17 C -0.355 4.355 18 H 0.141 0.859 19 C -0.007 4.007 20 N -0.827 5.827 21 Si 1.020 2.980 22 H -0.240 1.240 23 H -0.273 1.273 24 H -0.272 1.272 25 C -0.084 4.084 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.417 0.583 38 H 0.163 0.837 39 H 0.276 0.724 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 17.418 3.179 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.088 4.088 4 H 0.128 0.872 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.122 4.122 9 H 0.139 0.861 10 C 0.298 3.702 11 O -0.459 6.459 12 N -0.265 5.265 13 C -0.146 4.146 14 C -0.237 4.237 15 N -0.144 5.144 16 N 0.062 4.938 17 C -0.486 4.486 18 H 0.158 0.842 19 C -0.219 4.219 20 N -0.455 5.455 21 Si 0.839 3.161 22 H -0.163 1.163 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.234 4.234 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.254 0.746 38 H 0.180 0.820 39 H 0.085 0.915 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.399 15.705 1.964 17.918 hybrid contribution 0.153 -0.208 0.493 0.556 sum -8.247 15.497 2.457 17.726 Atomic orbital electron populations 1.21714 0.94071 1.01297 1.02902 1.21775 0.97556 0.96879 1.00619 1.21768 0.91096 0.95397 1.00504 0.87207 1.22448 0.99025 0.98218 0.95716 1.22524 0.92834 0.98036 1.01674 1.22438 0.99346 0.98351 0.95420 1.22113 0.97500 0.90150 1.02409 0.86069 1.21217 0.76803 0.89814 0.82319 1.90559 1.53942 1.66435 1.34998 1.42663 1.63218 1.11198 1.09470 1.17377 1.15972 0.88677 0.92572 1.24100 1.07284 0.92713 0.99588 1.78134 1.26352 1.20443 0.89452 1.44832 1.36319 1.08733 1.03943 1.20661 1.45225 0.91876 0.90809 0.84187 1.26892 0.95282 1.01766 0.97916 1.70413 1.36200 1.25790 1.13080 0.84529 0.77777 0.75520 0.78306 1.16259 1.19797 1.19767 1.21999 1.14218 0.88233 0.98929 0.90900 0.91623 0.94170 0.94801 0.93346 0.93331 0.89167 0.91067 0.88982 0.90263 0.93058 0.74593 0.81978 0.91476 0.79632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.74 71.98 0.70 -2.28 16 2 C -0.13 -3.45 4.11 30.60 0.13 -3.33 16 3 C -0.07 -1.34 2.95 -10.07 -0.03 -1.37 16 4 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.12 -2.02 5.41 31.67 0.17 -1.85 16 6 C -0.11 -1.80 6.93 32.01 0.22 -1.58 16 7 C -0.12 -2.61 6.32 31.79 0.20 -2.41 16 8 C -0.10 -2.26 3.29 -10.82 -0.04 -2.30 16 9 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 10 C 0.51 17.58 4.68 87.66 0.41 17.99 16 11 O -0.58 -25.89 12.13 -3.10 -0.04 -25.93 16 12 N -0.62 -21.61 4.93 -303.91 -1.50 -23.11 16 13 C -0.04 -1.87 6.90 37.73 0.26 -1.61 16 14 C -0.06 -3.48 10.85 85.42 0.93 -2.55 16 15 N -0.31 -19.35 10.40 -56.47 -0.59 -19.94 16 16 N -0.17 -9.60 3.74 -190.01 -0.71 -10.31 16 17 C -0.35 -19.15 10.25 84.01 0.86 -18.29 16 18 H 0.14 6.55 7.83 -2.91 -0.02 6.53 16 19 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 20 N -0.83 -48.81 11.81 21.66 0.26 -48.55 16 21 Si 1.02 39.26 29.55 68.60 2.03 41.29 16 22 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 25 C -0.08 -3.95 11.49 83.38 0.96 -2.99 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.20 7.43 -2.39 -0.02 1.18 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.03 1.16 7.03 -2.39 -0.02 1.14 16 30 H 0.05 1.44 6.95 -2.39 -0.02 1.43 16 31 H 0.05 1.05 7.80 -2.39 -0.02 1.04 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.53 6.88 -2.39 -0.02 1.51 16 37 H 0.42 10.60 8.83 -92.71 -0.82 9.78 16 38 H 0.16 9.35 5.92 -2.91 -0.02 9.34 16 39 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.19 6.91 8.06 -2.91 -0.02 6.89 16 Total: -1.00 -77.59 322.48 4.92 -72.67 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.23 Total: 36.38 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 5.24 Total: -22.49 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -2.54 Total: -101.91 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -77.59 4.92 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822880151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.604 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds