Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47433 * 2 1 4 4 C 1.50702 * 109.46817 * 240.00206 * 2 1 3 5 5 H 1.07994 * 120.00346 * 240.00447 * 4 2 1 6 6 C 1.37877 * 119.99869 * 59.99934 * 4 2 1 7 7 N 1.31517 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47291 * 90.00550 * 8 6 4 10 10 H 1.48507 * 109.47176 * 210.00172 * 8 6 4 11 11 H 1.48501 * 109.47332 * 330.00077 * 8 6 4 12 12 C 1.53001 * 109.47161 * 120.00612 * 2 1 3 13 13 N 1.46500 * 109.46696 * 299.99765 * 12 2 1 14 14 C 1.34783 * 119.99799 * 180.02562 * 13 12 2 15 15 O 1.21585 * 119.99564 * 359.97438 * 14 13 12 16 16 N 1.34768 * 119.99919 * 180.02562 * 14 13 12 17 17 N 1.40098 * 120.00275 * 359.97438 * 16 14 13 18 18 C 1.39678 * 119.99874 * 180.02562 * 17 16 14 19 19 C 1.38915 * 120.06984 * 180.02562 * 18 17 16 20 20 C 1.38113 * 119.92148 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.07217 * 359.97339 * 20 19 18 22 22 C 1.38291 * 120.15505 * 0.04590 * 21 20 19 23 23 C 1.38100 * 120.07089 * 359.95558 * 22 21 20 24 24 H 1.09007 * 109.46611 * 299.99486 * 1 2 3 25 25 H 1.08996 * 109.47124 * 59.99018 * 1 2 3 26 26 H 1.08996 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47443 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47311 * 300.00866 * 3 2 1 29 29 H 1.09007 * 109.46802 * 60.00631 * 3 2 1 30 30 H 0.96998 * 120.00244 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46727 * 179.97438 * 12 2 1 32 32 H 1.08996 * 109.47232 * 59.99674 * 12 2 1 33 33 H 0.97002 * 120.00407 * 359.97438 * 13 12 2 34 34 H 0.97007 * 120.00094 * 179.97438 * 16 14 13 35 35 H 0.96998 * 119.99918 * 0.02562 * 17 16 14 36 36 H 1.07998 * 120.03739 * 359.69591 * 19 18 17 37 37 H 1.08001 * 119.95849 * 179.97438 * 20 19 18 38 38 H 1.08007 * 119.92256 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.96329 * 179.97438 * 22 21 20 40 40 H 1.08007 * 120.03349 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3211 -1.1202 -4.0080 9 1 1.3424 -2.1614 -4.4120 10 1 2.4864 -0.1411 -5.1124 11 1 3.6291 -1.7583 -3.7125 12 6 2.0401 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4911 3.6695 15 8 2.5768 -1.4797 3.7809 16 7 1.4281 0.1439 4.7699 17 7 0.6223 1.2827 4.6415 18 6 0.1567 1.9410 5.7820 19 6 -0.6428 3.0700 5.6564 20 6 -1.1019 3.7183 6.7862 21 6 -0.7669 3.2443 8.0413 22 6 0.0293 2.1209 8.1699 23 6 0.4917 1.4679 7.0444 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6769 1.9562 0.8901 30 1 0.7086 1.1614 -3.4843 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.9944 0.7581 2.3564 34 1 1.6625 -0.1876 5.6509 35 1 0.3876 1.6139 3.7605 36 1 -0.9015 3.4430 4.6764 37 1 -1.7232 4.5963 6.6893 38 1 -1.1275 3.7529 8.9232 39 1 0.2894 1.7537 9.1517 40 1 1.1131 0.5903 7.1455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838753457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = 18.410257 kcal Electronic energy + Delta-G solvation = -21183.148752 eV Core-core repulsion = 17998.621490 eV Total energy + Delta-G solvation = -3184.527262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43818 -40.08029 -38.26925 -37.18265 -35.00103 -33.11483 -32.40199 -31.64585 -28.88582 -27.58383 -27.50685 -26.73859 -23.82838 -22.97572 -22.05424 -20.73016 -19.91545 -19.33320 -17.85196 -17.22375 -16.90455 -16.75580 -16.59221 -16.22792 -15.51778 -15.07558 -14.94697 -14.74710 -14.70545 -14.31413 -14.18215 -14.02981 -13.24966 -13.11893 -12.75099 -12.60643 -12.56853 -12.35898 -12.26523 -12.14548 -11.85923 -11.66440 -11.50963 -11.21041 -10.72611 -10.48516 -10.38450 -9.96294 -9.81441 -8.21975 -8.02844 -6.18254 0.55251 0.67368 0.94507 1.43068 1.46345 1.54197 1.98233 2.08794 2.47417 3.01474 3.21247 3.77697 4.00859 4.15039 4.36408 4.43720 4.50468 4.65134 4.67502 4.69867 4.82776 4.98562 5.02176 5.06199 5.14713 5.17863 5.29172 5.31548 5.43180 5.52086 5.65674 5.65688 5.67399 5.77520 5.97967 6.13727 6.16404 6.21625 6.42418 6.51273 6.85635 7.12362 7.41123 7.49692 8.96208 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.003499 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.129894 B = 8000.308985 C = 8671.371873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.163 3.837 13 N -0.721 5.721 14 C 0.706 3.294 15 O -0.624 6.624 16 N -0.525 5.525 17 N -0.548 5.548 18 C 0.202 3.798 19 C -0.197 4.197 20 C -0.072 4.072 21 C -0.182 4.182 22 C -0.075 4.075 23 C -0.213 4.213 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.260 0.740 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.400 0.600 34 H 0.436 0.564 35 H 0.426 0.574 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 7.480 18.217 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.039 3.961 13 N -0.378 5.378 14 C 0.405 3.595 15 O -0.502 6.502 16 N -0.279 5.279 17 N -0.280 5.280 18 C 0.100 3.900 19 C -0.221 4.221 20 C -0.091 4.091 21 C -0.202 4.202 22 C -0.094 4.094 23 C -0.237 4.237 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.238 0.762 34 H 0.282 0.718 35 H 0.269 0.731 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.744 6.721 17.966 19.760 hybrid contribution 0.238 -0.351 -1.184 1.258 sum -4.506 6.370 16.782 18.507 Atomic orbital electron populations 1.21675 0.97077 0.98746 1.00314 1.18359 0.93257 0.93045 0.90152 1.21671 0.98027 0.97797 1.00310 1.21262 1.31812 1.12244 0.91462 0.93571 1.25431 0.95127 0.95569 1.00915 1.69895 1.36933 1.23226 1.23636 0.85764 0.78659 0.78480 0.79921 1.20546 1.20870 1.20089 1.21250 0.97101 0.94905 0.82808 1.45216 1.55543 1.33001 1.04049 1.15831 0.80431 0.82400 0.80841 1.90959 1.45138 1.28950 1.85146 1.44231 1.51978 1.23326 1.08383 1.43415 1.53904 1.23043 1.07630 1.17963 0.94111 0.92172 0.85738 1.20756 1.03533 0.96937 1.00871 1.21209 0.97349 0.98959 0.91574 1.21289 1.02148 0.98588 0.98214 1.21173 0.95294 0.94647 0.98263 1.20674 1.07651 1.03915 0.91410 0.94708 0.91720 0.96245 0.96229 0.91725 0.94707 0.93004 0.94059 0.94043 0.76216 0.71778 0.73078 0.84559 0.83603 0.84225 0.84131 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.08 71.98 0.58 -4.63 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 4 C -0.53 -27.59 8.01 25.60 0.21 -27.39 16 5 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -47.07 9.35 21.45 0.20 -46.87 16 8 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.16 6.88 4.50 86.38 0.39 7.27 16 13 N -0.72 -24.79 4.92 -478.54 -2.36 -27.14 16 14 C 0.71 24.43 8.68 179.06 1.55 25.99 16 15 O -0.62 -26.55 17.18 -3.98 -0.07 -26.62 16 16 N -0.53 -13.75 6.22 -184.75 -1.15 -14.90 16 17 N -0.55 -12.14 6.45 -51.37 -0.33 -12.47 16 18 C 0.20 4.11 6.72 38.21 0.26 4.36 16 19 C -0.20 -3.46 9.90 22.40 0.22 -3.24 16 20 C -0.07 -1.07 10.04 22.25 0.22 -0.85 16 21 C -0.18 -2.62 10.04 22.29 0.22 -2.39 16 22 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16 23 C -0.21 -4.04 9.48 22.40 0.21 -3.83 16 24 H 0.03 1.24 6.86 -2.38 -0.02 1.23 16 25 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 29 H 0.03 1.24 6.86 -2.38 -0.02 1.23 16 30 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.40 11.90 4.08 -92.71 -0.38 11.53 16 34 H 0.44 10.09 6.70 -213.31 -1.43 8.66 16 35 H 0.43 8.80 6.71 -213.32 -1.43 7.36 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.12 2.08 6.20 -2.91 -0.02 2.06 16 Total: -1.00 -61.30 324.62 1.24 -60.06 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -2.16 Total: 29.72 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 5.08 Total: -5.97 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.64 Total: -101.39 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.07 Total: -26.62 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -61.30 1.24 -60.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.472 kcal (2) G-P(sol) polarization free energy of solvation -61.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds