Wall clock time and date at job start Mon Mar 30 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46671 * 2 1 4 4 H 1.08998 * 109.46689 * 185.56156 * 3 2 1 5 5 C 1.50703 * 109.47150 * 305.56579 * 3 2 1 6 6 H 1.07993 * 119.99903 * 116.64918 * 5 3 2 7 7 C 1.37883 * 119.99767 * 296.64287 * 5 3 2 8 8 N 1.31512 * 119.99940 * 352.47354 * 7 5 3 9 9 Si 1.86793 * 119.99653 * 172.46477 * 7 5 3 10 10 H 1.48498 * 109.46925 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47674 * 300.00506 * 9 7 5 12 12 H 1.48503 * 109.47146 * 60.00635 * 9 7 5 13 13 N 1.46900 * 109.46857 * 65.56668 * 3 2 1 14 14 C 1.46891 * 111.00352 * 87.03473 * 13 3 2 15 15 C 1.50697 * 109.47532 * 184.03870 * 14 13 3 16 16 O 1.21278 * 119.99823 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00062 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99759 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47126 * 180.02562 * 18 17 15 20 20 C 1.38224 * 119.61268 * 94.73019 * 19 18 17 21 21 C 1.38634 * 119.15895 * 179.75581 * 20 19 18 22 22 C 1.38673 * 118.41839 * 0.51232 * 21 20 19 23 23 C 1.38180 * 119.16432 * 359.72697 * 22 21 20 24 24 N 1.31851 * 119.62363 * 275.00456 * 19 18 17 25 25 H 1.09003 * 109.46846 * 303.32118 * 1 2 3 26 26 H 1.08999 * 109.47094 * 63.32149 * 1 2 3 27 27 H 1.09000 * 109.46490 * 183.32383 * 1 2 3 28 28 H 1.08997 * 109.47016 * 240.00375 * 2 1 3 29 29 H 1.08996 * 109.46934 * 119.99932 * 2 1 3 30 30 H 0.96995 * 120.00341 * 355.70826 * 8 7 5 31 31 H 1.00900 * 111.00190 * 323.07341 * 13 3 2 32 32 H 1.09007 * 109.47191 * 304.04373 * 14 13 3 33 33 H 1.09003 * 109.47376 * 64.03632 * 14 13 3 34 34 H 0.97000 * 120.00454 * 0.02562 * 17 15 14 35 35 H 1.08994 * 109.47608 * 300.00673 * 18 17 15 36 36 H 1.09004 * 109.46921 * 60.00956 * 18 17 15 37 37 H 1.07999 * 120.42375 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.79069 * 180.26917 * 21 20 19 39 39 H 1.08003 * 120.41939 * 179.71486 * 22 21 20 40 40 H 1.07998 * 119.61792 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1254 1.4442 -0.0996 5 6 1.4282 2.1916 -1.1558 6 1 0.7764 3.0324 -0.9699 7 6 1.7009 1.8035 -2.4505 8 7 2.6066 0.8787 -2.6828 9 14 0.7835 2.5912 -3.8743 10 1 1.2566 2.0036 -5.1534 11 1 -0.6726 2.3414 -3.7239 12 1 1.0370 4.0544 -3.8776 13 7 1.6630 2.0951 1.2610 14 6 2.6720 1.8537 2.3009 15 6 2.2049 2.4522 3.6027 16 8 1.1365 3.0233 3.6587 17 7 2.9741 2.3520 4.7048 18 6 2.5202 2.9343 5.9702 19 6 3.5553 2.6865 7.0371 20 6 4.5057 3.6539 7.3045 21 6 5.4504 3.4182 8.2915 22 6 5.4101 2.2084 8.9681 23 6 4.4332 1.2869 8.6425 24 7 3.5472 1.5473 7.7009 25 1 -0.3633 0.5646 0.8588 26 1 -0.3633 0.4614 -0.9183 27 1 -0.3632 -1.0260 0.0596 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1267 0.5142 -1.9498 31 1 0.7500 1.7927 1.5658 32 1 2.8159 0.7803 2.4254 33 1 3.6148 2.3148 2.0065 34 1 3.8285 1.8949 4.6601 35 1 2.3771 4.0076 5.8456 36 1 1.5772 2.4738 6.2646 37 1 4.5102 4.5831 6.7541 38 1 6.2022 4.1575 8.5251 39 1 6.1332 1.9890 9.7398 40 1 4.3948 0.3426 9.1651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846990180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:50 Heat of formation + Delta-G solvation = -3.805220 kcal Electronic energy + Delta-G solvation = -20646.693119 eV Core-core repulsion = 17461.202522 eV Total energy + Delta-G solvation = -3185.490597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66610 -39.32593 -36.56954 -34.99457 -32.85979 -32.69558 -31.81774 -30.65894 -27.84986 -26.23206 -24.26060 -23.91285 -23.46815 -22.23134 -20.38518 -19.52630 -17.72909 -17.05335 -16.74586 -16.25451 -16.11481 -15.54523 -15.26540 -14.60268 -14.03140 -13.90028 -13.76036 -13.60404 -13.38464 -13.20652 -12.98328 -12.75853 -12.16493 -12.02187 -11.83948 -11.63266 -11.07354 -10.72042 -10.31845 -10.25126 -10.07212 -10.02489 -9.88443 -9.81596 -9.75623 -9.33571 -9.06729 -8.60332 -8.22608 -7.30950 -6.26291 -3.94252 0.60725 0.86069 2.90515 3.07467 3.50970 3.51910 3.59648 3.70661 3.86053 4.29961 4.44733 4.58924 4.65372 4.70358 4.98088 5.16335 5.25040 5.27987 5.34890 5.42732 5.60030 5.73951 5.74962 5.77850 5.82102 6.14983 6.19205 6.25079 6.35949 6.39522 6.72928 6.96749 7.03834 7.28262 7.35420 7.51614 7.58888 7.93002 8.30501 8.38351 8.50100 8.71407 8.96845 9.72685 11.09584 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002912 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.554924 B = 9612.057345 C = 9714.579718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.152 4.152 3 C 0.205 3.795 4 H 0.024 0.976 5 C -0.568 4.568 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.661 5.661 14 C 0.042 3.958 15 C 0.516 3.484 16 O -0.524 6.524 17 N -0.732 5.732 18 C 0.173 3.827 19 C 0.111 3.889 20 C -0.153 4.153 21 C -0.076 4.076 22 C -0.170 4.170 23 C 0.099 3.901 24 N -0.470 5.470 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.267 0.733 31 H 0.339 0.661 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.399 0.601 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 1.620 22.527 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.192 4.192 3 C 0.096 3.904 4 H 0.042 0.958 5 C -0.607 4.607 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.894 3.106 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.294 5.294 14 C -0.091 4.091 15 C 0.302 3.698 16 O -0.398 6.398 17 N -0.387 5.387 18 C 0.049 3.951 19 C -0.027 4.027 20 C -0.174 4.174 21 C -0.102 4.102 22 C -0.190 4.190 23 C -0.059 4.059 24 N -0.179 5.179 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.749 2.005 20.515 21.400 hybrid contribution 1.308 -0.555 2.313 2.715 sum 7.057 1.450 22.829 23.938 Atomic orbital electron populations 1.21557 0.96560 0.98322 1.02195 1.22228 0.96445 1.01051 0.99441 1.19376 0.95502 0.88640 0.86845 0.95784 1.21839 1.31345 1.16605 0.90897 0.92456 1.25708 0.97003 0.96089 0.99690 1.70812 1.21327 1.27395 1.35894 0.83600 0.75679 0.75619 0.75740 1.21053 1.21487 1.21515 1.60606 1.03522 1.63086 1.02214 1.21842 0.99008 0.98318 0.89916 1.21020 0.84313 0.79437 0.84980 1.90687 1.22215 1.41857 1.85017 1.45963 1.23876 1.60120 1.08757 1.20035 0.95082 0.99427 0.80574 1.21275 0.95414 0.90024 0.96008 1.22086 0.95521 1.00991 0.98774 1.21646 0.97558 0.96926 0.94105 1.22224 1.00368 0.95033 1.01359 1.22819 0.90311 0.99255 0.93474 1.67530 1.24129 1.20029 1.06240 0.94383 0.91149 0.95489 0.91172 0.96262 0.92156 0.84065 0.93466 0.88824 0.76713 0.89859 0.89811 0.84327 0.84542 0.84608 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.39 37.16 0.35 -2.45 16 2 C -0.15 -3.49 5.46 -26.72 -0.15 -3.64 16 3 C 0.20 5.06 1.97 -68.86 -0.14 4.92 16 4 H 0.02 0.64 7.23 -51.93 -0.38 0.26 16 5 C -0.57 -15.83 7.33 -34.44 -0.25 -16.08 16 6 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 7 C 0.02 0.51 5.25 -17.82 -0.09 0.42 16 8 N -0.92 -26.97 12.90 55.43 0.72 -26.25 16 9 Si 1.06 25.38 29.91 -169.99 -5.08 20.30 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.66 -14.76 5.94 -109.22 -0.65 -15.41 16 14 C 0.04 0.75 5.95 -4.98 -0.03 0.72 16 15 C 0.52 8.66 7.86 -10.99 -0.09 8.58 16 16 O -0.52 -10.75 16.11 5.56 0.09 -10.66 16 17 N -0.73 -9.29 5.55 -61.47 -0.34 -9.63 16 18 C 0.17 2.00 5.98 -5.19 -0.03 1.97 16 19 C 0.11 1.12 6.15 -82.59 -0.51 0.61 16 20 C -0.15 -1.22 9.72 -39.44 -0.38 -1.61 16 21 C -0.08 -0.49 10.18 -39.27 -0.40 -0.89 16 22 C -0.17 -1.06 10.11 -39.44 -0.40 -1.46 16 23 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 24 N -0.47 -5.04 10.27 -9.48 -0.10 -5.14 16 25 H 0.04 0.78 6.34 -51.93 -0.33 0.45 16 26 H 0.07 1.67 7.20 -51.93 -0.37 1.30 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.76 6.26 -51.93 -0.32 1.44 16 29 H 0.02 0.39 7.45 -51.93 -0.39 0.01 16 30 H 0.27 7.77 6.02 -40.82 -0.25 7.53 16 31 H 0.34 7.64 6.06 -39.29 -0.24 7.41 16 32 H 0.05 0.78 7.43 -51.92 -0.39 0.40 16 33 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 34 H 0.40 4.26 8.46 -40.82 -0.35 3.92 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -33.29 333.49 -8.24 -41.53 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.59 Total: 8.56 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.31 Total: -8.32 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.37 Total: -56.43 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.29 -8.24 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846990180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.723 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds