Wall clock time and date at job start Mon Mar 30 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46671 * 2 1 4 4 H 1.08998 * 109.46689 * 185.56156 * 3 2 1 5 5 C 1.50703 * 109.47150 * 305.56579 * 3 2 1 6 6 H 1.07993 * 119.99903 * 116.64918 * 5 3 2 7 7 C 1.37883 * 119.99767 * 296.64287 * 5 3 2 8 8 N 1.31512 * 119.99940 * 352.47354 * 7 5 3 9 9 Si 1.86793 * 119.99653 * 172.46477 * 7 5 3 10 10 H 1.48498 * 109.46925 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47674 * 300.00506 * 9 7 5 12 12 H 1.48503 * 109.47146 * 60.00635 * 9 7 5 13 13 N 1.46900 * 109.46857 * 65.56668 * 3 2 1 14 14 C 1.46891 * 111.00352 * 87.03473 * 13 3 2 15 15 C 1.50697 * 109.47532 * 184.03870 * 14 13 3 16 16 O 1.21278 * 119.99823 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00062 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99759 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47126 * 180.02562 * 18 17 15 20 20 C 1.38224 * 119.61268 * 94.73019 * 19 18 17 21 21 C 1.38634 * 119.15895 * 179.75581 * 20 19 18 22 22 C 1.38673 * 118.41839 * 0.51232 * 21 20 19 23 23 C 1.38180 * 119.16432 * 359.72697 * 22 21 20 24 24 N 1.31851 * 119.62363 * 275.00456 * 19 18 17 25 25 H 1.09003 * 109.46846 * 303.32118 * 1 2 3 26 26 H 1.08999 * 109.47094 * 63.32149 * 1 2 3 27 27 H 1.09000 * 109.46490 * 183.32383 * 1 2 3 28 28 H 1.08997 * 109.47016 * 240.00375 * 2 1 3 29 29 H 1.08996 * 109.46934 * 119.99932 * 2 1 3 30 30 H 0.96995 * 120.00341 * 355.70826 * 8 7 5 31 31 H 1.00900 * 111.00190 * 323.07341 * 13 3 2 32 32 H 1.09007 * 109.47191 * 304.04373 * 14 13 3 33 33 H 1.09003 * 109.47376 * 64.03632 * 14 13 3 34 34 H 0.97000 * 120.00454 * 0.02562 * 17 15 14 35 35 H 1.08994 * 109.47608 * 300.00673 * 18 17 15 36 36 H 1.09004 * 109.46921 * 60.00956 * 18 17 15 37 37 H 1.07999 * 120.42375 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.79069 * 180.26917 * 21 20 19 39 39 H 1.08003 * 120.41939 * 179.71486 * 22 21 20 40 40 H 1.07998 * 119.61792 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1254 1.4442 -0.0996 5 6 1.4282 2.1916 -1.1558 6 1 0.7764 3.0324 -0.9699 7 6 1.7009 1.8035 -2.4505 8 7 2.6066 0.8787 -2.6828 9 14 0.7835 2.5912 -3.8743 10 1 1.2566 2.0036 -5.1534 11 1 -0.6726 2.3414 -3.7239 12 1 1.0370 4.0544 -3.8776 13 7 1.6630 2.0951 1.2610 14 6 2.6720 1.8537 2.3009 15 6 2.2049 2.4522 3.6027 16 8 1.1365 3.0233 3.6587 17 7 2.9741 2.3520 4.7048 18 6 2.5202 2.9343 5.9702 19 6 3.5553 2.6865 7.0371 20 6 4.5057 3.6539 7.3045 21 6 5.4504 3.4182 8.2915 22 6 5.4101 2.2084 8.9681 23 6 4.4332 1.2869 8.6425 24 7 3.5472 1.5473 7.7009 25 1 -0.3633 0.5646 0.8588 26 1 -0.3633 0.4614 -0.9183 27 1 -0.3632 -1.0260 0.0596 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.1267 0.5142 -1.9498 31 1 0.7500 1.7927 1.5658 32 1 2.8159 0.7803 2.4254 33 1 3.6148 2.3148 2.0065 34 1 3.8285 1.8949 4.6601 35 1 2.3771 4.0076 5.8456 36 1 1.5772 2.4738 6.2646 37 1 4.5102 4.5831 6.7541 38 1 6.2022 4.1575 8.5251 39 1 6.1332 1.9890 9.7398 40 1 4.3948 0.3426 9.1651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846990180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:49 Heat of formation + Delta-G solvation = -28.142438 kcal Electronic energy + Delta-G solvation = -20647.748460 eV Core-core repulsion = 17461.202522 eV Total energy + Delta-G solvation = -3186.545938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38065 -40.58957 -38.38210 -36.11173 -34.61172 -33.44733 -32.82832 -32.30746 -29.19891 -27.69325 -25.97205 -25.29276 -24.47824 -22.97056 -21.73266 -21.39540 -19.17032 -18.24565 -17.60165 -17.45313 -17.27516 -16.62432 -16.22922 -15.97824 -15.72589 -15.43916 -15.14055 -14.80855 -14.57649 -14.31719 -14.05955 -13.90916 -13.69010 -13.56985 -13.27870 -13.05179 -12.60338 -12.59960 -12.09968 -11.94053 -11.89802 -11.68358 -11.14598 -10.86630 -10.64417 -10.46261 -10.35775 -10.22031 -10.05365 -9.07971 -8.49018 -6.17694 0.00562 0.31388 1.55732 1.57293 1.63620 1.83191 2.04888 2.61859 2.87127 3.16244 3.26320 3.57855 3.68079 3.81766 4.00467 4.13145 4.18898 4.26781 4.31344 4.37256 4.42282 4.49053 4.50261 4.54813 4.71251 4.80240 4.91991 5.08036 5.17716 5.20235 5.23547 5.27631 5.40330 5.53465 5.72445 5.95192 6.21369 6.37005 6.56299 6.66726 6.81760 6.97405 7.16141 7.55542 8.87397 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002912 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.554924 B = 9612.057345 C = 9714.579718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 C 0.209 3.791 4 H 0.005 0.995 5 C -0.578 4.578 6 H 0.039 0.961 7 C -0.023 4.023 8 N -0.937 5.937 9 Si 1.105 2.895 10 H -0.285 1.285 11 H -0.275 1.275 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.042 3.958 15 C 0.521 3.479 16 O -0.566 6.566 17 N -0.711 5.711 18 C 0.176 3.824 19 C 0.090 3.910 20 C -0.156 4.156 21 C -0.076 4.076 22 C -0.159 4.159 23 C 0.084 3.916 24 N -0.504 5.504 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.259 0.741 31 H 0.337 0.663 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.411 0.589 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.251 1.710 24.287 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.184 4.184 3 C 0.100 3.900 4 H 0.023 0.977 5 C -0.617 4.617 6 H 0.057 0.943 7 C -0.221 4.221 8 N -0.575 5.575 9 Si 0.929 3.071 10 H -0.210 1.210 11 H -0.200 1.200 12 H -0.203 1.203 13 N -0.309 5.309 14 C -0.090 4.090 15 C 0.308 3.692 16 O -0.444 6.444 17 N -0.365 5.365 18 C 0.052 3.948 19 C -0.047 4.047 20 C -0.176 4.176 21 C -0.102 4.102 22 C -0.179 4.179 23 C -0.073 4.073 24 N -0.214 5.214 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.247 0.753 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.906 2.086 22.323 23.460 hybrid contribution 1.058 -0.592 1.933 2.282 sum 7.964 1.494 24.256 25.574 Atomic orbital electron populations 1.21474 0.95510 0.99847 1.01173 1.22087 0.97321 0.99647 0.99334 1.19165 0.93978 0.89545 0.87292 0.97699 1.22071 1.30935 1.16321 0.92381 0.94264 1.26879 0.97069 0.95986 1.02214 1.70910 1.22371 1.28607 1.35636 0.83069 0.75429 0.75448 0.73189 1.21036 1.20022 1.20338 1.60439 1.04447 1.63271 1.02698 1.21872 0.98050 0.99662 0.89416 1.20773 0.83970 0.78988 0.85496 1.90673 1.24056 1.43990 1.85688 1.45764 1.23563 1.58920 1.08249 1.20025 0.95187 0.99229 0.80359 1.21014 0.96133 0.91058 0.96457 1.22249 0.95247 1.00845 0.99305 1.22048 0.97437 0.97641 0.93097 1.22599 0.99864 0.94225 1.01189 1.23251 0.90343 1.00608 0.93130 1.67434 1.25671 1.20705 1.07568 0.93583 0.93708 0.92887 0.93581 0.93863 0.93029 0.84340 0.91649 0.87899 0.75304 0.89517 0.91562 0.83222 0.81614 0.81439 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.39 71.99 0.68 -4.56 16 2 C -0.14 -6.58 5.46 30.60 0.17 -6.42 16 3 C 0.21 10.43 1.97 44.17 0.09 10.52 16 4 H 0.01 0.27 7.23 -2.39 -0.02 0.26 16 5 C -0.58 -32.69 7.33 25.60 0.19 -32.51 16 6 H 0.04 2.32 7.82 -2.91 -0.02 2.29 16 7 C -0.02 -1.31 5.25 84.66 0.44 -0.87 16 8 N -0.94 -55.74 12.90 21.45 0.28 -55.46 16 9 Si 1.11 51.20 29.91 68.60 2.05 53.26 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.68 -30.25 5.94 -499.46 -2.97 -33.22 16 14 C 0.04 1.48 5.95 85.56 0.51 1.99 16 15 C 0.52 17.34 7.86 87.66 0.69 18.03 16 16 O -0.57 -23.50 16.11 -3.02 -0.05 -23.55 16 17 N -0.71 -17.58 5.55 -466.78 -2.59 -20.17 16 18 C 0.18 4.05 5.98 85.63 0.51 4.57 16 19 C 0.09 1.75 6.15 42.55 0.26 2.01 16 20 C -0.16 -2.20 9.72 22.36 0.22 -1.98 16 21 C -0.08 -0.75 10.18 22.47 0.23 -0.52 16 22 C -0.16 -1.47 10.11 22.36 0.23 -1.25 16 23 C 0.08 1.17 11.18 84.67 0.95 2.12 16 24 N -0.50 -10.35 10.27 -183.89 -1.89 -12.24 16 25 H 0.05 1.87 6.34 -2.39 -0.02 1.85 16 26 H 0.04 2.12 7.20 -2.39 -0.02 2.10 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 2.32 6.26 -2.39 -0.01 2.31 16 29 H 0.04 1.74 7.45 -2.39 -0.02 1.72 16 30 H 0.26 15.40 6.02 -92.71 -0.56 14.84 16 31 H 0.34 15.21 6.06 -89.69 -0.54 14.66 16 32 H 0.07 2.07 7.43 -2.38 -0.02 2.05 16 33 H 0.10 3.39 8.13 -2.39 -0.02 3.37 16 34 H 0.41 8.28 8.46 -92.71 -0.78 7.50 16 35 H 0.09 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 40 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -72.76 333.49 -0.07 -72.83 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.06 Total: 27.41 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.15 Total: -8.86 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -7.17 Total: -121.09 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.26 kcal Total: -72.76 -0.07 -72.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846990180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.692 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds