Wall clock time and date at job start Mon Mar 30 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47418 * 2 1 4 4 N 1.46498 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00052 * 269.99989 * 4 3 2 6 6 C 1.53008 * 109.46996 * 270.00036 * 5 4 3 7 7 C 1.34777 * 119.99980 * 90.00649 * 4 3 2 8 8 O 1.21583 * 119.99881 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00316 * 180.02562 * 7 4 3 10 10 C 1.39455 * 120.00065 * 184.99888 * 9 7 4 11 11 C 1.38645 * 119.64555 * 185.31356 * 10 9 7 12 12 C 1.40827 * 118.67359 * 179.72287 * 11 10 9 13 13 C 1.41540 * 120.99565 * 180.25513 * 12 11 10 14 14 H 1.08000 * 119.99540 * 153.80221 * 13 12 11 15 15 C 1.40030 * 120.00498 * 333.79288 * 13 12 11 16 16 N 1.30747 * 119.99529 * 350.10009 * 15 13 12 17 17 Si 1.86800 * 120.00283 * 170.09116 * 15 13 12 18 18 H 1.48504 * 109.46684 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.46927 * 120.00308 * 17 15 13 20 20 H 1.48504 * 109.47088 * 240.00630 * 17 15 13 21 21 C 1.41160 * 118.00284 * 0.28385 * 12 11 10 22 22 C 1.36590 * 119.13251 * 359.97438 * 21 12 11 23 23 N 1.32071 * 121.25735 * 0.03367 * 22 21 12 24 24 H 1.09000 * 109.46626 * 299.99467 * 1 2 3 25 25 H 1.08994 * 109.47018 * 59.99593 * 1 2 3 26 26 H 1.09004 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46933 * 240.00032 * 2 1 3 28 28 H 1.08999 * 109.47473 * 120.00450 * 2 1 3 29 29 H 1.09003 * 109.46630 * 60.00128 * 3 2 1 30 30 H 1.08999 * 109.47166 * 300.00638 * 3 2 1 31 31 H 1.08990 * 109.47281 * 30.00137 * 5 4 3 32 32 H 1.09004 * 109.46980 * 150.00581 * 5 4 3 33 33 H 1.08998 * 109.46830 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47146 * 299.99643 * 6 5 4 35 35 H 1.08995 * 109.47010 * 60.00515 * 6 5 4 36 36 H 0.97003 * 119.99474 * 4.99462 * 9 7 4 37 37 H 1.08002 * 120.66539 * 0.02562 * 11 10 9 38 38 H 0.96998 * 119.99440 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.43879 * 179.97438 * 21 12 11 40 40 H 1.07999 * 119.37454 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.4421 1.2678 6 6 4.4933 2.8846 1.7095 7 6 4.1785 1.4426 -1.1681 8 8 3.5701 1.4425 -2.2208 9 7 5.5262 1.4420 -1.1688 10 6 6.2230 1.5476 -2.3722 11 6 7.6049 1.4353 -2.3766 12 6 8.2873 1.5392 -3.6041 13 6 9.6968 1.4266 -3.6662 14 1 10.1719 1.0881 -4.5751 15 6 10.4754 1.7544 -2.5494 16 7 9.9261 2.3446 -1.5201 17 14 12.2986 1.3482 -2.5300 18 1 12.6719 0.6869 -3.8062 19 1 13.0828 2.5994 -2.3734 20 1 12.5904 0.4357 -1.3953 21 6 7.5234 1.7595 -4.7705 22 6 6.1653 1.8621 -4.6665 23 7 5.5579 1.7597 -3.4983 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.6494 0.9283 2.0275 32 1 5.1905 0.9283 1.1369 33 1 5.0391 2.8844 2.6530 34 1 5.0821 3.3985 0.9498 35 1 3.5410 3.3984 1.8404 36 1 6.0115 1.3683 -0.3321 37 1 8.1468 1.2666 -1.4578 38 1 10.4653 2.5713 -0.7464 39 1 8.0064 1.8458 -5.7327 40 1 5.5770 2.0302 -5.5564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871722292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:56 Heat of formation + Delta-G solvation = 4.345481 kcal Electronic energy + Delta-G solvation = -21530.382581 eV Core-core repulsion = 18345.245424 eV Total energy + Delta-G solvation = -3185.137156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04857 -38.20479 -35.97034 -34.48017 -33.98380 -33.11783 -30.48733 -30.16782 -28.62357 -26.07536 -25.82719 -23.37973 -22.11891 -21.86842 -20.90854 -19.18612 -17.95389 -17.51568 -16.20112 -15.54937 -15.14108 -14.86178 -14.73187 -14.20594 -14.12006 -13.81546 -13.46145 -13.43965 -12.88592 -12.70879 -12.57207 -12.38041 -12.10455 -11.95644 -11.58663 -11.43305 -11.30893 -11.17277 -11.15003 -10.88426 -10.63428 -10.23676 -10.07961 -9.70920 -9.47023 -9.36573 -8.41603 -7.93844 -7.68378 -6.98704 -6.71744 -4.60465 2.71995 2.82170 2.98368 3.02698 3.08211 3.26340 3.86383 3.89015 4.26228 4.73390 4.88886 4.97180 4.99509 5.24524 5.27619 5.32691 5.42916 5.67539 5.72207 5.73986 5.77707 5.83103 5.93170 6.00029 6.17103 6.19473 6.29792 6.54879 6.65626 6.79803 6.87625 6.98338 7.16602 7.28853 7.46210 7.53115 7.89523 8.12276 8.39409 8.49897 8.75672 8.78732 9.22422 9.76591 10.11679 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.004387 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.330203 B = 6381.245870 C = 7191.329985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.137 3.863 4 N -0.637 5.637 5 C 0.107 3.893 6 C -0.174 4.174 7 C 0.695 3.305 8 O -0.532 6.532 9 N -0.668 5.668 10 C 0.354 3.646 11 C -0.243 4.243 12 C 0.143 3.857 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.796 5.796 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.283 4.283 22 C 0.119 3.881 23 N -0.552 5.552 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.403 0.597 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.101 0.899 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -1.855 9.569 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.013 3.987 4 N -0.376 5.376 5 C -0.017 4.017 6 C -0.232 4.232 7 C 0.396 3.604 8 O -0.403 6.403 9 N -0.317 5.317 10 C 0.127 3.873 11 C -0.269 4.269 12 C 0.135 3.865 13 C -0.486 4.486 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.422 5.422 17 Si 0.738 3.262 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.307 4.307 22 C -0.035 4.035 23 N -0.271 5.271 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.240 0.760 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.919 -1.663 9.064 13.540 hybrid contribution 2.120 -0.158 0.642 2.221 sum -7.799 -1.820 9.707 12.584 Atomic orbital electron populations 1.21678 0.95463 1.01627 1.01745 1.21920 0.95769 0.97856 1.02438 1.21261 0.78350 0.96433 1.02651 1.47328 1.06236 1.79584 1.04496 1.21441 0.96930 0.97158 0.86175 1.22241 1.02155 0.97071 1.01749 1.16039 0.82011 0.78609 0.83767 1.90990 1.66693 1.53669 1.28960 1.42750 1.04739 1.75655 1.08565 1.18009 0.87867 0.96574 0.84807 1.21614 0.90076 1.14177 1.01036 1.17578 0.93332 0.85589 0.90018 1.19612 0.90837 1.39382 0.98729 0.90052 1.25943 1.01436 0.92321 0.94561 1.69764 1.38088 1.28975 1.05362 0.86168 0.81492 0.79009 0.79506 1.18369 1.19917 1.19728 1.21685 0.94884 1.15177 0.98937 1.21473 0.91858 0.96440 0.93745 1.67192 1.39404 1.23360 0.97162 0.92914 0.92441 0.92759 0.91350 0.92333 0.91214 0.89899 0.90470 0.91004 0.91614 0.91953 0.92416 0.76048 0.85066 0.90957 0.88053 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.14 -1.65 6.26 -26.73 -0.17 -1.82 16 3 C 0.14 1.75 5.41 -4.04 -0.02 1.72 16 4 N -0.64 -9.49 2.47 -179.43 -0.44 -9.93 16 5 C 0.11 1.20 5.94 -4.04 -0.02 1.17 16 6 C -0.17 -1.86 10.24 37.16 0.38 -1.48 16 7 C 0.69 14.07 8.23 -86.92 -0.72 13.35 16 8 O -0.53 -12.97 14.22 5.29 0.08 -12.89 16 9 N -0.67 -13.83 5.27 -15.86 -0.08 -13.91 16 10 C 0.35 8.85 7.41 -154.68 -1.15 7.70 16 11 C -0.24 -6.27 8.62 -38.45 -0.33 -6.60 16 12 C 0.14 3.81 5.60 -106.55 -0.60 3.22 16 13 C -0.45 -11.76 9.14 -37.65 -0.34 -12.10 16 14 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 15 C 0.08 1.82 5.31 -17.34 -0.09 1.73 16 16 N -0.80 -19.60 10.70 55.55 0.59 -19.00 16 17 Si 0.91 18.02 29.57 -169.99 -5.03 12.99 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 C -0.28 -7.06 9.85 -39.07 -0.38 -7.45 16 22 C 0.12 2.93 11.10 -18.04 -0.20 2.73 16 23 N -0.55 -14.56 7.90 -12.76 -0.10 -14.66 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.08 1.23 7.42 -51.93 -0.39 0.85 16 31 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.07 0.80 6.29 -51.93 -0.33 0.48 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 7.07 6.39 -40.82 -0.26 6.81 16 37 H 0.13 3.36 6.11 -52.49 -0.32 3.04 16 38 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 39 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 40 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -31.62 334.23 -9.13 -40.75 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.91 Total: 10.46 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -3.27 Total: 1.16 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.03 Total: -57.51 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.62 -9.13 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.099 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds