Wall clock time and date at job start Mon Mar 30 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47418 * 2 1 4 4 N 1.46498 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00052 * 269.99989 * 4 3 2 6 6 C 1.53008 * 109.46996 * 270.00036 * 5 4 3 7 7 C 1.34777 * 119.99980 * 90.00649 * 4 3 2 8 8 O 1.21583 * 119.99881 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00316 * 180.02562 * 7 4 3 10 10 C 1.39455 * 120.00065 * 184.99888 * 9 7 4 11 11 C 1.38645 * 119.64555 * 185.31356 * 10 9 7 12 12 C 1.40827 * 118.67359 * 179.72287 * 11 10 9 13 13 C 1.41540 * 120.99565 * 180.25513 * 12 11 10 14 14 H 1.08000 * 119.99540 * 153.80221 * 13 12 11 15 15 C 1.40030 * 120.00498 * 333.79288 * 13 12 11 16 16 N 1.30747 * 119.99529 * 350.10009 * 15 13 12 17 17 Si 1.86800 * 120.00283 * 170.09116 * 15 13 12 18 18 H 1.48504 * 109.46684 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.46927 * 120.00308 * 17 15 13 20 20 H 1.48504 * 109.47088 * 240.00630 * 17 15 13 21 21 C 1.41160 * 118.00284 * 0.28385 * 12 11 10 22 22 C 1.36590 * 119.13251 * 359.97438 * 21 12 11 23 23 N 1.32071 * 121.25735 * 0.03367 * 22 21 12 24 24 H 1.09000 * 109.46626 * 299.99467 * 1 2 3 25 25 H 1.08994 * 109.47018 * 59.99593 * 1 2 3 26 26 H 1.09004 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46933 * 240.00032 * 2 1 3 28 28 H 1.08999 * 109.47473 * 120.00450 * 2 1 3 29 29 H 1.09003 * 109.46630 * 60.00128 * 3 2 1 30 30 H 1.08999 * 109.47166 * 300.00638 * 3 2 1 31 31 H 1.08990 * 109.47281 * 30.00137 * 5 4 3 32 32 H 1.09004 * 109.46980 * 150.00581 * 5 4 3 33 33 H 1.08998 * 109.46830 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47146 * 299.99643 * 6 5 4 35 35 H 1.08995 * 109.47010 * 60.00515 * 6 5 4 36 36 H 0.97003 * 119.99474 * 4.99462 * 9 7 4 37 37 H 1.08002 * 120.66539 * 0.02562 * 11 10 9 38 38 H 0.96998 * 119.99440 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.43879 * 179.97438 * 21 12 11 40 40 H 1.07999 * 119.37454 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2381 1.4421 1.2678 6 6 4.4933 2.8846 1.7095 7 6 4.1785 1.4426 -1.1681 8 8 3.5701 1.4425 -2.2208 9 7 5.5262 1.4420 -1.1688 10 6 6.2230 1.5476 -2.3722 11 6 7.6049 1.4353 -2.3766 12 6 8.2873 1.5392 -3.6041 13 6 9.6968 1.4266 -3.6662 14 1 10.1719 1.0881 -4.5751 15 6 10.4754 1.7544 -2.5494 16 7 9.9261 2.3446 -1.5201 17 14 12.2986 1.3482 -2.5300 18 1 12.6719 0.6869 -3.8062 19 1 13.0828 2.5994 -2.3734 20 1 12.5904 0.4357 -1.3953 21 6 7.5234 1.7595 -4.7705 22 6 6.1653 1.8621 -4.6665 23 7 5.5579 1.7597 -3.4983 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.6494 0.9283 2.0275 32 1 5.1905 0.9283 1.1369 33 1 5.0391 2.8844 2.6530 34 1 5.0821 3.3985 0.9498 35 1 3.5410 3.3984 1.8404 36 1 6.0115 1.3683 -0.3321 37 1 8.1468 1.2666 -1.4578 38 1 10.4653 2.5713 -0.7464 39 1 8.0064 1.8458 -5.7327 40 1 5.5770 2.0302 -5.5564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871722292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:55 Heat of formation + Delta-G solvation = -13.448714 kcal Electronic energy + Delta-G solvation = -21531.154195 eV Core-core repulsion = 18345.245424 eV Total energy + Delta-G solvation = -3185.908771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61079 -39.97936 -37.33075 -36.16395 -35.68714 -34.31721 -32.41462 -31.24680 -30.37927 -27.92713 -27.03160 -24.50044 -23.79479 -23.40641 -22.33761 -20.75480 -19.55898 -19.08975 -17.75681 -17.21661 -16.67973 -16.25104 -16.10510 -16.00919 -15.62118 -15.05744 -14.78951 -14.70516 -14.64650 -14.32662 -14.02365 -13.54829 -13.20110 -13.11029 -12.89524 -12.85236 -12.69401 -12.51558 -12.21021 -12.16578 -11.97710 -11.85772 -11.61048 -11.48070 -11.19787 -11.13339 -9.92584 -9.67724 -9.60683 -8.83694 -8.56723 -6.57377 0.83451 1.00912 1.42248 1.56520 1.57135 1.60644 2.21444 2.26862 2.83417 2.89332 3.76430 3.93575 4.01981 4.07951 4.15027 4.34554 4.40516 4.47554 4.56554 4.70159 4.75424 4.83805 4.88269 4.91393 4.94077 4.96479 5.10120 5.16909 5.24179 5.26264 5.32598 5.38722 5.50049 5.64958 5.67892 5.85248 5.97049 6.24783 6.56494 6.79557 6.83056 6.89371 7.59712 7.89981 8.30415 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.004387 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.330203 B = 6381.245870 C = 7191.329985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.132 3.868 4 N -0.626 5.626 5 C 0.100 3.900 6 C -0.168 4.168 7 C 0.689 3.311 8 O -0.581 6.581 9 N -0.661 5.661 10 C 0.350 3.650 11 C -0.259 4.259 12 C 0.115 3.885 13 C -0.483 4.483 14 H 0.083 0.917 15 C 0.037 3.963 16 N -0.817 5.817 17 Si 0.991 3.009 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.262 1.262 21 C -0.296 4.296 22 C 0.112 3.888 23 N -0.580 5.580 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.416 0.584 37 H 0.128 0.872 38 H 0.291 0.709 39 H 0.116 0.884 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 -2.091 11.874 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.010 3.990 4 N -0.364 5.364 5 C -0.022 4.022 6 C -0.226 4.226 7 C 0.390 3.610 8 O -0.456 6.456 9 N -0.312 5.312 10 C 0.122 3.878 11 C -0.285 4.285 12 C 0.107 3.893 13 C -0.513 4.513 14 H 0.101 0.899 15 C -0.180 4.180 16 N -0.443 5.443 17 Si 0.811 3.189 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.186 1.186 21 C -0.320 4.320 22 C -0.041 4.041 23 N -0.300 5.300 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.255 0.745 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.628 -1.895 11.441 15.073 hybrid contribution 1.971 -0.054 0.004 1.972 sum -7.657 -1.950 11.445 13.907 Atomic orbital electron populations 1.21651 0.93540 1.02413 1.02428 1.21848 0.97398 0.96653 1.01406 1.21495 0.76876 0.97420 1.03218 1.47405 1.07155 1.77719 1.04085 1.21778 0.97281 0.98134 0.85027 1.22196 1.02451 0.96135 1.01848 1.16286 0.81636 0.78306 0.84790 1.90946 1.67441 1.55861 1.31336 1.42647 1.05236 1.75431 1.07881 1.18236 0.88123 0.95609 0.85786 1.21583 0.90436 1.15679 1.00830 1.18011 0.94313 0.86118 0.90904 1.19898 0.91002 1.40528 0.99906 0.89862 1.26829 1.06115 0.91430 0.93595 1.69797 1.40225 1.28351 1.05901 0.85021 0.75166 0.79002 0.79683 1.18266 1.19094 1.18599 1.21870 0.95124 1.15671 0.99313 1.21916 0.92210 0.95626 0.94331 1.67312 1.40084 1.24594 0.97971 0.90524 0.93455 0.91961 0.95175 0.90473 0.87200 0.92655 0.86611 0.91125 0.89057 0.95162 0.91501 0.74533 0.85395 0.89789 0.86550 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 71.98 0.71 -1.70 16 2 C -0.13 -2.96 6.26 30.59 0.19 -2.77 16 3 C 0.13 3.20 5.41 86.38 0.47 3.67 16 4 N -0.63 -18.09 2.47 -839.84 -2.08 -20.16 16 5 C 0.10 2.00 5.94 86.38 0.51 2.51 16 6 C -0.17 -3.21 10.24 71.98 0.74 -2.47 16 7 C 0.69 28.46 8.23 179.05 1.47 29.94 16 8 O -0.58 -29.42 14.22 -3.98 -0.06 -29.48 16 9 N -0.66 -28.05 5.27 -322.36 -1.70 -29.75 16 10 C 0.35 18.07 7.41 132.76 0.98 19.05 16 11 C -0.26 -13.78 8.62 23.00 0.20 -13.58 16 12 C 0.11 6.28 5.60 -21.11 -0.12 6.16 16 13 C -0.48 -25.30 9.14 23.52 0.21 -25.08 16 14 H 0.08 4.18 7.87 -2.91 -0.02 4.16 16 15 C 0.04 1.75 5.31 85.29 0.45 2.20 16 16 N -0.82 -40.12 10.70 21.84 0.23 -39.89 16 17 Si 0.99 36.10 29.57 68.60 2.03 38.13 16 18 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 19 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 C -0.30 -15.13 9.85 22.60 0.22 -14.91 16 22 C 0.11 5.68 11.10 84.27 0.94 6.61 16 23 N -0.58 -31.54 7.90 -194.27 -1.53 -33.07 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 27 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.11 1.80 8.07 -2.39 -0.02 1.78 16 30 H 0.05 1.67 7.42 -2.39 -0.02 1.65 16 31 H 0.12 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.07 1.45 6.29 -2.38 -0.02 1.43 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.42 14.78 6.39 -92.71 -0.59 14.19 16 37 H 0.13 6.73 6.11 -2.91 -0.02 6.71 16 38 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 39 H 0.12 5.41 8.06 -2.91 -0.02 5.38 16 40 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -71.22 334.23 4.33 -66.89 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.44 Total: 37.70 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.98 Total: 9.62 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -5.07 Total: -122.87 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -71.22 4.33 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.442 kcal (2) G-P(sol) polarization free energy of solvation -71.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds