Wall clock time and date at job start Mon Mar 30 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47207 * 2 1 4 4 H 1.09000 * 109.47284 * 54.31565 * 3 2 1 5 5 C 1.50700 * 109.46757 * 174.31589 * 3 2 1 6 6 H 1.08004 * 119.99749 * 119.99964 * 5 3 2 7 7 C 1.37877 * 120.00358 * 299.99909 * 5 3 2 8 8 N 1.31511 * 120.00111 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99602 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47110 * 90.00455 * 9 7 5 11 11 H 1.48505 * 109.46936 * 210.00075 * 9 7 5 12 12 H 1.48498 * 109.47310 * 330.00129 * 9 7 5 13 13 N 1.46897 * 109.47031 * 294.31394 * 3 2 1 14 14 C 1.46898 * 110.99849 * 152.95475 * 13 3 2 15 15 C 1.50700 * 109.47398 * 174.67860 * 14 13 3 16 16 O 1.21286 * 119.99828 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00550 * 180.02562 * 15 14 13 18 18 C 1.39401 * 119.99997 * 179.97438 * 17 15 14 19 19 N 1.32376 * 119.69867 * 359.97438 * 18 17 15 20 20 C 1.31905 * 121.63614 * 179.97438 * 19 18 17 21 21 C 1.38117 * 120.85017 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.30737 * 0.02562 * 21 20 19 23 23 C 1.38395 * 118.49335 * 359.97438 * 22 21 20 24 24 C 1.50706 * 120.44754 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47526 * 179.28921 * 1 2 3 26 26 H 1.08997 * 109.47281 * 299.29088 * 1 2 3 27 27 H 1.08999 * 109.46647 * 59.28551 * 1 2 3 28 28 H 1.09002 * 109.46725 * 239.99889 * 2 1 3 29 29 H 1.09003 * 109.46843 * 120.00248 * 2 1 3 30 30 H 0.96994 * 119.99962 * 179.97438 * 8 7 5 31 31 H 1.00905 * 111.00197 * 29.00370 * 13 3 2 32 32 H 1.09003 * 109.47561 * 54.68216 * 14 13 3 33 33 H 1.09003 * 109.47536 * 294.67470 * 14 13 3 34 34 H 0.96996 * 119.99648 * 359.97438 * 17 15 14 35 35 H 1.08002 * 119.57410 * 179.72277 * 20 19 18 36 36 H 1.07998 * 120.34753 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.74880 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46808 * 269.97699 * 24 23 22 39 39 H 1.08998 * 109.47038 * 29.98158 * 24 23 22 40 40 H 1.09003 * 109.47119 * 149.97967 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5960 1.9849 0.8347 5 6 3.5405 1.4447 0.1407 6 1 4.1545 1.8861 -0.6304 7 6 4.1294 0.8832 1.2538 8 7 5.4387 0.8856 1.3768 9 14 3.0673 0.1190 2.5870 10 1 2.8500 -1.3183 2.2836 11 1 3.7499 0.2501 3.8994 12 1 1.7580 0.8177 2.6381 13 7 1.6656 2.0942 -1.2621 14 6 1.5376 3.5470 -1.0866 15 6 1.2824 4.1940 -2.4235 16 8 1.2134 3.5119 -3.4240 17 7 1.1308 5.5306 -2.5075 18 6 0.8952 6.1290 -3.7443 19 7 0.8220 5.3789 -4.8325 20 6 0.6002 5.9047 -6.0217 21 6 0.4347 7.2675 -6.1738 22 6 0.5042 8.0891 -5.0574 23 6 0.7382 7.5079 -3.8234 24 6 0.8216 8.3584 -2.5821 25 1 -0.3634 -1.0275 -0.0127 26 1 -0.3634 0.5028 0.8962 27 1 -0.3632 0.5249 -0.8835 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8530 0.4909 2.1600 31 1 0.8155 1.6987 -1.6350 32 1 2.4591 3.9442 -0.6609 33 1 0.7058 3.7601 -0.4152 34 1 1.1856 6.0761 -1.7073 35 1 0.5514 5.2618 -6.8882 36 1 0.2538 7.6894 -7.1514 37 1 0.3787 9.1578 -5.1496 38 1 1.8540 8.6702 -2.4240 39 1 0.1903 9.2389 -2.7018 40 1 0.4808 7.7812 -1.7225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878699179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:41 Heat of formation + Delta-G solvation = 20.772406 kcal Electronic energy + Delta-G solvation = -21163.837299 eV Core-core repulsion = 17979.412467 eV Total energy + Delta-G solvation = -3184.424831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83461 -38.89848 -36.48703 -34.94132 -33.56664 -32.45164 -31.73545 -30.70831 -27.87055 -27.29837 -25.68678 -23.46398 -22.44112 -22.07188 -20.22330 -19.90353 -18.22130 -16.95404 -16.75848 -15.82075 -15.54749 -15.50540 -15.14355 -14.57992 -14.36562 -14.05852 -13.85748 -13.30259 -13.12338 -12.92162 -12.90427 -12.74192 -12.41335 -12.32789 -11.80567 -11.76634 -11.57937 -11.04467 -10.69153 -10.60782 -10.32063 -10.09383 -9.87574 -9.69498 -9.46017 -9.23277 -8.87015 -8.53559 -8.19074 -7.41703 -6.04662 -4.02287 1.02490 1.25397 2.90766 2.97999 3.25327 3.34147 3.37097 3.87140 4.33940 4.39294 4.58625 4.71221 4.85855 4.94040 5.11436 5.19979 5.24064 5.26694 5.33910 5.50854 5.69806 5.75498 5.76333 5.82203 5.91191 5.95239 6.02335 6.07816 6.26887 6.46560 6.58081 6.65872 6.72881 6.78815 7.11250 7.24366 7.69020 7.87140 8.08249 8.21856 8.50999 8.73660 9.08704 9.57690 11.08676 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.003745 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.693328 B = 7473.925465 C = 7808.550604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C 0.191 3.809 4 H 0.003 0.997 5 C -0.499 4.499 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.658 5.658 14 C 0.052 3.948 15 C 0.500 3.500 16 O -0.453 6.453 17 N -0.668 5.668 18 C 0.370 3.630 19 N -0.473 5.473 20 C 0.127 3.873 21 C -0.211 4.211 22 C -0.052 4.052 23 C -0.182 4.182 24 C -0.108 4.108 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.263 0.737 31 H 0.329 0.671 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.414 0.586 35 H 0.156 0.844 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 15.283 -7.984 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.174 4.174 3 C 0.083 3.917 4 H 0.021 0.979 5 C -0.537 4.537 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.538 5.538 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.291 5.291 14 C -0.081 4.081 15 C 0.286 3.714 16 O -0.319 6.319 17 N -0.316 5.316 18 C 0.138 3.862 19 N -0.187 5.187 20 C -0.031 4.031 21 C -0.233 4.233 22 C -0.078 4.078 23 C -0.188 4.188 24 C -0.165 4.165 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.065 0.935 34 H 0.252 0.748 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.831 13.712 -8.651 20.070 hybrid contribution -1.307 0.771 1.573 2.185 sum -13.138 14.482 -7.078 20.795 Atomic orbital electron populations 1.21924 0.98136 1.00737 1.00733 1.22124 0.93014 1.00204 1.02048 1.19651 0.97062 0.89487 0.85467 0.97948 1.21058 0.89058 1.37780 1.05839 0.90013 1.24963 0.94767 0.95902 0.97774 1.69885 1.08955 1.45739 1.29250 0.86945 0.80668 0.79938 0.81170 1.20518 1.22493 1.19305 1.60143 1.38762 0.99540 1.30616 1.21746 1.02569 0.92424 0.91328 1.21393 0.76433 0.80846 0.92766 1.90780 1.42733 1.61275 1.37153 1.43972 1.71126 1.09156 1.07381 1.18413 0.93343 0.87802 0.86595 1.67750 1.14679 1.38505 0.97775 1.22694 0.93086 0.92944 0.94361 1.22003 1.06452 0.95176 0.99660 1.21213 0.95308 1.00030 0.91204 1.20292 1.08364 0.92860 0.97268 1.20663 1.02823 0.98948 0.94087 0.93438 0.93626 0.93078 0.91074 0.92635 0.92689 0.85160 0.87128 0.93464 0.74784 0.82638 0.85012 0.84847 0.90747 0.90973 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.77 37.16 0.36 -2.37 16 2 C -0.14 -2.93 4.99 -26.73 -0.13 -3.07 16 3 C 0.19 4.44 1.61 -68.87 -0.11 4.33 16 4 H 0.00 0.07 6.89 -51.93 -0.36 -0.29 16 5 C -0.50 -13.99 9.22 -34.44 -0.32 -14.30 16 6 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 9 Si 0.88 21.55 24.41 -169.99 -4.15 17.40 16 10 H -0.28 -6.67 6.82 56.52 0.39 -6.29 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.66 -13.87 5.83 -109.22 -0.64 -14.51 16 14 C 0.05 0.92 5.93 -4.98 -0.03 0.89 16 15 C 0.50 8.73 7.85 -10.98 -0.09 8.64 16 16 O -0.45 -9.69 14.56 5.55 0.08 -9.61 16 17 N -0.67 -9.14 5.30 -11.43 -0.06 -9.20 16 18 C 0.37 5.27 7.41 -154.70 -1.15 4.13 16 19 N -0.47 -7.70 7.87 -12.37 -0.10 -7.80 16 20 C 0.13 1.58 11.18 -17.56 -0.20 1.39 16 21 C -0.21 -2.03 10.11 -39.42 -0.40 -2.43 16 22 C -0.05 -0.47 9.85 -39.32 -0.39 -0.86 16 23 C -0.18 -1.94 5.91 -104.28 -0.62 -2.55 16 24 C -0.11 -0.78 9.59 36.01 0.35 -0.44 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.82 6.45 -51.93 -0.33 0.48 16 28 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.06 1.27 3.21 -51.93 -0.17 1.10 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.33 6.50 6.39 -39.29 -0.25 6.25 16 32 H 0.11 2.00 7.99 -51.93 -0.42 1.59 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.41 4.12 6.68 -40.82 -0.27 3.84 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -35.26 324.79 -7.56 -42.82 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.55 Total: 7.53 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.81 Total: -4.81 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.02 Total: -58.21 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.15 Total: 17.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.26 -7.56 -42.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878699179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.588 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds