Wall clock time and date at job start Mon Mar 30 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47207 * 2 1 4 4 H 1.09000 * 109.47284 * 54.31565 * 3 2 1 5 5 C 1.50700 * 109.46757 * 174.31589 * 3 2 1 6 6 H 1.08004 * 119.99749 * 119.99964 * 5 3 2 7 7 C 1.37877 * 120.00358 * 299.99909 * 5 3 2 8 8 N 1.31511 * 120.00111 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99602 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47110 * 90.00455 * 9 7 5 11 11 H 1.48505 * 109.46936 * 210.00075 * 9 7 5 12 12 H 1.48498 * 109.47310 * 330.00129 * 9 7 5 13 13 N 1.46897 * 109.47031 * 294.31394 * 3 2 1 14 14 C 1.46898 * 110.99849 * 152.95475 * 13 3 2 15 15 C 1.50700 * 109.47398 * 174.67860 * 14 13 3 16 16 O 1.21286 * 119.99828 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00550 * 180.02562 * 15 14 13 18 18 C 1.39401 * 119.99997 * 179.97438 * 17 15 14 19 19 N 1.32376 * 119.69867 * 359.97438 * 18 17 15 20 20 C 1.31905 * 121.63614 * 179.97438 * 19 18 17 21 21 C 1.38117 * 120.85017 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.30737 * 0.02562 * 21 20 19 23 23 C 1.38395 * 118.49335 * 359.97438 * 22 21 20 24 24 C 1.50706 * 120.44754 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47526 * 179.28921 * 1 2 3 26 26 H 1.08997 * 109.47281 * 299.29088 * 1 2 3 27 27 H 1.08999 * 109.46647 * 59.28551 * 1 2 3 28 28 H 1.09002 * 109.46725 * 239.99889 * 2 1 3 29 29 H 1.09003 * 109.46843 * 120.00248 * 2 1 3 30 30 H 0.96994 * 119.99962 * 179.97438 * 8 7 5 31 31 H 1.00905 * 111.00197 * 29.00370 * 13 3 2 32 32 H 1.09003 * 109.47561 * 54.68216 * 14 13 3 33 33 H 1.09003 * 109.47536 * 294.67470 * 14 13 3 34 34 H 0.96996 * 119.99648 * 359.97438 * 17 15 14 35 35 H 1.08002 * 119.57410 * 179.72277 * 20 19 18 36 36 H 1.07998 * 120.34753 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.74880 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46808 * 269.97699 * 24 23 22 39 39 H 1.08998 * 109.47038 * 29.98158 * 24 23 22 40 40 H 1.09003 * 109.47119 * 149.97967 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5960 1.9849 0.8347 5 6 3.5405 1.4447 0.1407 6 1 4.1545 1.8861 -0.6304 7 6 4.1294 0.8832 1.2538 8 7 5.4387 0.8856 1.3768 9 14 3.0673 0.1190 2.5870 10 1 2.8500 -1.3183 2.2836 11 1 3.7499 0.2501 3.8994 12 1 1.7580 0.8177 2.6381 13 7 1.6656 2.0942 -1.2621 14 6 1.5376 3.5470 -1.0866 15 6 1.2824 4.1940 -2.4235 16 8 1.2134 3.5119 -3.4240 17 7 1.1308 5.5306 -2.5075 18 6 0.8952 6.1290 -3.7443 19 7 0.8220 5.3789 -4.8325 20 6 0.6002 5.9047 -6.0217 21 6 0.4347 7.2675 -6.1738 22 6 0.5042 8.0891 -5.0574 23 6 0.7382 7.5079 -3.8234 24 6 0.8216 8.3584 -2.5821 25 1 -0.3634 -1.0275 -0.0127 26 1 -0.3634 0.5028 0.8962 27 1 -0.3632 0.5249 -0.8835 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8530 0.4909 2.1600 31 1 0.8155 1.6987 -1.6350 32 1 2.4591 3.9442 -0.6609 33 1 0.7058 3.7601 -0.4152 34 1 1.1856 6.0761 -1.7073 35 1 0.5514 5.2618 -6.8882 36 1 0.2538 7.6894 -7.1514 37 1 0.3787 9.1578 -5.1496 38 1 1.8540 8.6702 -2.4240 39 1 0.1903 9.2389 -2.7018 40 1 0.4808 7.7812 -1.7225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878699179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:41 Heat of formation + Delta-G solvation = -5.633485 kcal Electronic energy + Delta-G solvation = -21164.982344 eV Core-core repulsion = 17979.412467 eV Total energy + Delta-G solvation = -3185.569877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84695 -40.11864 -38.16510 -36.07351 -34.47817 -34.38605 -33.38193 -31.68077 -29.49418 -28.23217 -27.17985 -24.66608 -23.98433 -22.94749 -21.72418 -21.42041 -19.24615 -18.86629 -18.13738 -17.15278 -16.86514 -16.61917 -16.31171 -16.01793 -15.79526 -15.18771 -15.07003 -14.82937 -14.62518 -14.05992 -13.89714 -13.80210 -13.59455 -13.48032 -13.36998 -13.07371 -12.81110 -12.47497 -12.42953 -12.19072 -11.80306 -11.76291 -11.30451 -11.27367 -11.10433 -10.67816 -10.54285 -9.97089 -9.15222 -9.05285 -8.25537 -6.28697 0.13396 0.42601 1.33037 1.36358 1.47709 1.69085 1.83917 2.33692 2.95834 3.06915 3.32631 3.58605 3.83883 3.88587 4.08789 4.18503 4.25258 4.30386 4.31162 4.37285 4.42551 4.57254 4.63083 4.79684 4.81649 4.84167 5.02028 5.08068 5.12996 5.20231 5.21097 5.29294 5.38163 5.41460 5.70498 5.87035 6.00927 6.18868 6.46363 6.77639 6.85476 7.04901 7.35943 7.38660 8.92026 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028285 B = 0.003745 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.693328 B = 7473.925465 C = 7808.550604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.199 3.801 4 H 0.013 0.987 5 C -0.504 4.504 6 H 0.027 0.973 7 C 0.008 3.992 8 N -0.952 5.952 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.299 1.299 12 H -0.239 1.239 13 N -0.679 5.679 14 C 0.054 3.946 15 C 0.504 3.496 16 O -0.503 6.503 17 N -0.654 5.654 18 C 0.329 3.671 19 N -0.526 5.526 20 C 0.097 3.903 21 C -0.193 4.193 22 C -0.053 4.053 23 C -0.172 4.172 24 C -0.109 4.109 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.338 0.662 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.430 0.570 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.622 17.268 -7.391 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.090 3.910 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.593 5.593 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.227 1.227 12 H -0.163 1.163 13 N -0.313 5.313 14 C -0.078 4.078 15 C 0.290 3.710 16 O -0.373 6.373 17 N -0.304 5.304 18 C 0.099 3.901 19 N -0.241 5.241 20 C -0.060 4.060 21 C -0.214 4.214 22 C -0.079 4.079 23 C -0.178 4.178 24 C -0.166 4.166 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.159 0.841 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.271 0.729 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.192 0.808 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.769 15.763 -8.075 23.060 hybrid contribution -0.345 0.323 1.207 1.296 sum -15.114 16.085 -6.868 23.116 Atomic orbital electron populations 1.21845 0.94298 1.02638 1.01880 1.22032 0.96424 0.98238 1.00857 1.19432 0.93693 0.91182 0.86669 0.96967 1.21295 0.91679 1.36918 1.04406 0.95445 1.25854 0.95993 0.96460 1.00526 1.70061 1.11326 1.47504 1.30420 0.85818 0.79738 0.79449 0.77206 1.19575 1.22654 1.16260 1.59912 1.39836 1.01611 1.29922 1.21747 1.03359 0.90425 0.92302 1.21301 0.75808 0.81971 0.91893 1.90755 1.45484 1.62729 1.38377 1.43650 1.70387 1.07943 1.08461 1.18729 0.96016 0.89310 0.86090 1.67568 1.16121 1.40929 0.99441 1.23006 0.94511 0.94830 0.93688 1.22391 1.03561 0.93879 1.01566 1.21758 0.93932 1.01945 0.90248 1.20691 1.06179 0.91509 0.99396 1.20786 1.03902 0.99302 0.92631 0.91228 0.92397 0.92009 0.92538 0.93668 0.92616 0.84143 0.88356 0.89754 0.72881 0.81877 0.81556 0.80845 0.89972 0.88518 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.77 71.98 0.70 -3.97 16 2 C -0.14 -5.73 4.99 30.59 0.15 -5.58 16 3 C 0.20 9.16 1.61 44.17 0.07 9.23 16 4 H 0.01 0.57 6.89 -2.39 -0.02 0.55 16 5 C -0.50 -29.30 9.22 25.60 0.24 -29.07 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.48 5.45 84.66 0.46 0.94 16 8 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 9 Si 0.95 44.22 24.41 68.60 1.67 45.90 16 10 H -0.27 -12.08 6.82 99.48 0.68 -11.40 16 11 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.24 -9.93 6.53 99.48 0.65 -9.28 16 13 N -0.68 -28.91 5.83 -499.47 -2.91 -31.83 16 14 C 0.05 1.90 5.93 85.56 0.51 2.41 16 15 C 0.50 18.01 7.85 87.66 0.69 18.69 16 16 O -0.50 -22.48 14.56 -3.05 -0.04 -22.52 16 17 N -0.65 -17.89 5.30 -308.45 -1.63 -19.52 16 18 C 0.33 9.31 7.41 132.90 0.98 10.30 16 19 N -0.53 -17.60 7.87 -193.04 -1.52 -19.12 16 20 C 0.10 2.40 11.18 84.65 0.95 3.35 16 21 C -0.19 -3.23 10.11 22.38 0.23 -3.00 16 22 C -0.05 -0.80 9.85 22.44 0.22 -0.58 16 23 C -0.17 -3.29 5.91 -19.64 -0.12 -3.41 16 24 C -0.11 -1.23 9.59 71.24 0.68 -0.55 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.80 6.45 -2.39 -0.02 1.78 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 1.97 3.21 -2.39 -0.01 1.96 16 30 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 31 H 0.34 13.26 6.39 -89.69 -0.57 12.68 16 32 H 0.10 3.67 7.99 -2.39 -0.02 3.65 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.43 8.17 6.68 -92.71 -0.62 7.55 16 35 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.65 8.09 -2.39 -0.02 0.64 16 40 H 0.07 0.72 6.56 -2.39 -0.02 0.70 16 Total: -1.00 -82.15 324.79 1.41 -80.74 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.21 Total: 27.66 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.76 Total: -1.24 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.77 Total: -130.54 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.04 Total: -22.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.67 Total: 45.90 kcal Total: -82.15 1.41 -80.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878699179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.107 kcal (2) G-P(sol) polarization free energy of solvation -82.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds