Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 H 1.09008 * 109.46980 * 301.65020 * 3 2 1 5 5 C 1.50700 * 109.47171 * 181.65625 * 3 2 1 6 6 O 1.21276 * 119.99789 * 249.02062 * 5 3 2 7 7 N 1.34780 * 120.00145 * 69.29835 * 5 3 2 8 8 C 1.39268 * 119.99915 * 185.00107 * 7 5 3 9 9 C 1.39679 * 119.57228 * 185.71290 * 8 7 5 10 10 C 1.38652 * 119.49576 * 179.76972 * 9 8 7 11 11 C 1.38354 * 118.66613 * 0.49044 * 10 9 8 12 12 C 1.40579 * 119.12829 * 359.75182 * 11 10 9 13 13 C 1.41342 * 119.78527 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99501 * 359.97438 * 13 12 11 15 15 C 1.40020 * 119.99875 * 179.97438 * 13 12 11 16 16 N 1.30743 * 120.00441 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47201 * 59.99929 * 17 15 13 19 19 H 1.48499 * 109.47436 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46983 * 300.00506 * 17 15 13 21 21 N 1.31896 * 119.57434 * 5.98018 * 8 7 5 22 22 N 1.46898 * 109.47575 * 61.65383 * 3 2 1 23 23 C 1.46901 * 110.99826 * 56.58339 * 22 3 2 24 24 C 1.46897 * 111.00170 * 180.54255 * 22 3 2 25 25 H 1.09000 * 109.46839 * 64.46143 * 1 2 3 26 26 H 1.08999 * 109.47146 * 184.46079 * 1 2 3 27 27 H 1.08994 * 109.46707 * 304.46174 * 1 2 3 28 28 H 1.09002 * 109.47036 * 239.99871 * 2 1 3 29 29 H 1.08998 * 109.47208 * 120.00234 * 2 1 3 30 30 H 0.97002 * 119.99585 * 4.99701 * 7 5 3 31 31 H 1.07996 * 120.24897 * 359.97438 * 9 8 7 32 32 H 1.07995 * 120.67040 * 180.22152 * 10 9 8 33 33 H 1.08002 * 120.43259 * 179.77320 * 11 10 9 34 34 H 0.96996 * 120.00317 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.46754 * 66.86116 * 23 22 3 36 36 H 1.09000 * 109.47384 * 186.86172 * 23 22 3 37 37 H 1.09001 * 109.46987 * 306.86459 * 23 22 3 38 38 H 1.08994 * 109.47111 * 63.64586 * 24 22 3 39 39 H 1.09006 * 109.46693 * 183.64109 * 24 22 3 40 40 H 1.08998 * 109.46942 * 303.63578 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6527 1.9648 -0.8749 5 6 3.5465 1.4426 -0.0411 6 8 4.1794 1.8092 0.9263 7 7 4.1904 1.0406 -1.1548 8 6 5.5795 0.9412 -1.1585 9 6 6.2459 0.6404 -2.3487 10 6 7.6292 0.5466 -2.3516 11 6 8.3104 0.7455 -1.1639 12 6 7.5819 1.0402 0.0017 13 6 8.2638 1.2465 1.2225 14 1 9.3410 1.1771 1.2577 15 6 7.5427 1.5408 2.3861 16 7 6.2386 1.6244 2.3435 17 14 8.4439 1.8142 3.9993 18 1 9.3779 2.9598 3.8567 19 1 7.4602 2.1075 5.0724 20 1 9.2101 0.5918 4.3515 21 7 6.2484 1.1272 -0.0371 22 7 1.5834 2.1234 1.2189 23 6 2.0195 1.4001 2.4208 24 6 2.0446 3.5178 1.2471 25 1 -0.3633 0.4431 -0.9273 26 1 -0.3633 -1.0245 0.0799 27 1 -0.3632 0.5815 0.8473 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.6861 0.8204 -1.9537 31 1 5.6881 0.4854 -3.2603 32 1 8.1640 0.3186 -3.2617 33 1 9.3877 0.6756 -1.1328 34 1 5.7391 1.8279 3.1497 35 1 3.1053 1.4511 2.5016 36 1 1.5677 1.8547 3.3024 37 1 1.7090 0.3576 2.3501 38 1 1.5975 4.0652 0.4175 39 1 1.7479 3.9795 2.1890 40 1 3.1305 3.5432 1.1563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = 32.841147 kcal Electronic energy + Delta-G solvation = -22586.423777 eV Core-core repulsion = 19402.522286 eV Total energy + Delta-G solvation = -3183.901491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94608 -38.10575 -36.07608 -34.20513 -33.22991 -32.48502 -30.33410 -29.28936 -27.33392 -27.01566 -25.48965 -23.05714 -22.32912 -21.38438 -20.41430 -19.05038 -17.71879 -16.48166 -16.30960 -15.56473 -14.85967 -14.68463 -14.45982 -14.14126 -14.06393 -13.53770 -13.43225 -12.96591 -12.76533 -12.44316 -12.12043 -11.95170 -11.56360 -11.52490 -11.35014 -11.26314 -11.03573 -10.99026 -10.78403 -10.68474 -10.49370 -10.45716 -9.98071 -9.61614 -9.43199 -9.02292 -7.98547 -7.86543 -7.13302 -6.95037 -6.17802 -4.42451 2.73888 3.04681 3.13798 3.15943 3.24950 3.67482 3.88467 4.03510 4.26172 4.88143 5.04802 5.16180 5.25468 5.46399 5.56682 5.70682 5.83193 5.94601 5.98312 6.02251 6.05449 6.09870 6.19375 6.26403 6.39794 6.45022 6.48306 6.61013 6.71170 6.82348 6.83909 7.21273 7.23546 7.29911 7.53781 7.61237 7.79401 8.04627 8.18052 8.45048 8.72387 9.02359 9.23048 10.22135 10.44397 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.007357 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.906370 B = 3805.048010 C = 5179.487429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.063 3.937 4 H 0.095 0.905 5 C 0.447 3.553 6 O -0.408 6.408 7 N -0.666 5.666 8 C 0.371 3.629 9 C -0.357 4.357 10 C -0.037 4.037 11 C -0.305 4.305 12 C 0.272 3.728 13 C -0.426 4.426 14 H 0.081 0.919 15 C 0.060 3.940 16 N -0.659 5.659 17 Si 0.896 3.104 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.267 1.267 21 N -0.473 5.473 22 N -0.514 5.514 23 C -0.003 4.003 24 C 0.009 3.991 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.397 0.603 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.270 0.730 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.204 -0.678 -2.523 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.050 4.050 4 H 0.113 0.887 5 C 0.228 3.772 6 O -0.273 6.273 7 N -0.313 5.313 8 C 0.132 3.868 9 C -0.383 4.383 10 C -0.061 4.061 11 C -0.329 4.329 12 C 0.147 3.853 13 C -0.457 4.457 14 H 0.099 0.901 15 C -0.169 4.169 16 N -0.277 5.277 17 Si 0.720 3.280 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.192 1.192 21 N -0.192 5.192 22 N -0.237 5.237 23 C -0.151 4.151 24 C -0.139 4.139 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.957 -0.136 -0.784 10.986 hybrid contribution 1.478 -0.210 -0.676 1.639 sum -9.479 -0.346 -1.461 9.597 Atomic orbital electron populations 1.21662 0.94762 1.00968 1.02474 1.21546 0.96855 0.93955 1.02745 1.21912 0.90706 0.96891 0.95455 0.88736 1.22018 0.90464 0.80365 0.84309 1.91001 1.66346 1.38366 1.31561 1.43648 1.05314 1.67361 1.14997 1.18673 0.83529 0.93518 0.91073 1.20529 0.94850 1.26322 0.96568 1.20566 0.93292 0.95863 0.96371 1.21629 0.98690 1.17988 0.94547 1.18376 0.87115 0.87896 0.91956 1.19532 0.94271 1.40272 0.91577 0.90071 1.26138 0.95108 0.95283 1.00339 1.70308 1.05357 1.24061 1.28006 0.86584 0.80124 0.79676 0.81581 1.19185 1.20414 1.19187 1.68666 1.07770 1.20880 1.21880 1.62568 1.57018 1.02564 1.01508 1.22766 1.03048 0.97947 0.91342 1.22529 1.01242 0.88730 1.01369 0.93118 0.93390 0.91288 0.91508 0.91093 0.76919 0.89143 0.88673 0.88615 0.91794 0.90293 0.92615 0.92072 0.92570 0.92007 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.83 37.16 0.37 -1.15 16 2 C -0.11 -1.45 5.02 -26.73 -0.13 -1.59 16 3 C 0.06 0.93 2.27 -68.87 -0.16 0.78 16 4 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 5 C 0.45 8.68 6.31 -10.98 -0.07 8.61 16 6 O -0.41 -9.55 7.67 5.56 0.04 -9.50 16 7 N -0.67 -12.92 5.38 -11.40 -0.06 -12.98 16 8 C 0.37 8.97 7.41 -154.98 -1.15 7.82 16 9 C -0.36 -8.03 9.96 -38.89 -0.39 -8.42 16 10 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 11 C -0.31 -7.72 9.83 -38.66 -0.38 -8.10 16 12 C 0.27 7.61 6.55 -85.00 -0.56 7.05 16 13 C -0.43 -11.67 9.14 -37.73 -0.34 -12.01 16 14 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 15 C 0.06 1.57 5.50 -17.35 -0.10 1.47 16 16 N -0.66 -17.75 9.11 55.55 0.51 -17.25 16 17 Si 0.90 19.17 29.56 -169.99 -5.02 14.14 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 N -0.47 -13.10 5.75 -10.25 -0.06 -13.15 16 22 N -0.51 -7.74 4.27 -244.59 -1.04 -8.79 16 23 C 0.00 -0.05 8.88 60.07 0.53 0.48 16 24 C 0.01 0.15 9.32 60.06 0.56 0.71 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.02 6.11 -51.93 -0.32 0.71 16 30 H 0.40 6.03 8.70 -40.82 -0.36 5.68 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.27 6.86 8.29 -40.82 -0.34 6.52 16 35 H 0.08 1.57 5.52 -51.93 -0.29 1.28 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.91 5.83 -51.93 -0.30 0.61 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.06 1.14 5.66 -51.93 -0.29 0.84 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -30.74 319.84 -8.75 -39.49 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.72 Total: 8.80 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.21 Total: -5.58 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.66 Total: -52.17 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.04 Total: -9.50 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.74 -8.75 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.333 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds