Wall clock time and date at job start Mon Mar 30 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 H 1.09008 * 109.46980 * 301.65020 * 3 2 1 5 5 C 1.50700 * 109.47171 * 181.65625 * 3 2 1 6 6 O 1.21276 * 119.99789 * 249.02062 * 5 3 2 7 7 N 1.34780 * 120.00145 * 69.29835 * 5 3 2 8 8 C 1.39268 * 119.99915 * 185.00107 * 7 5 3 9 9 C 1.39679 * 119.57228 * 185.71290 * 8 7 5 10 10 C 1.38652 * 119.49576 * 179.76972 * 9 8 7 11 11 C 1.38354 * 118.66613 * 0.49044 * 10 9 8 12 12 C 1.40579 * 119.12829 * 359.75182 * 11 10 9 13 13 C 1.41342 * 119.78527 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99501 * 359.97438 * 13 12 11 15 15 C 1.40020 * 119.99875 * 179.97438 * 13 12 11 16 16 N 1.30743 * 120.00441 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47201 * 59.99929 * 17 15 13 19 19 H 1.48499 * 109.47436 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46983 * 300.00506 * 17 15 13 21 21 N 1.31896 * 119.57434 * 5.98018 * 8 7 5 22 22 N 1.46898 * 109.47575 * 61.65383 * 3 2 1 23 23 C 1.46901 * 110.99826 * 56.58339 * 22 3 2 24 24 C 1.46897 * 111.00170 * 180.54255 * 22 3 2 25 25 H 1.09000 * 109.46839 * 64.46143 * 1 2 3 26 26 H 1.08999 * 109.47146 * 184.46079 * 1 2 3 27 27 H 1.08994 * 109.46707 * 304.46174 * 1 2 3 28 28 H 1.09002 * 109.47036 * 239.99871 * 2 1 3 29 29 H 1.08998 * 109.47208 * 120.00234 * 2 1 3 30 30 H 0.97002 * 119.99585 * 4.99701 * 7 5 3 31 31 H 1.07996 * 120.24897 * 359.97438 * 9 8 7 32 32 H 1.07995 * 120.67040 * 180.22152 * 10 9 8 33 33 H 1.08002 * 120.43259 * 179.77320 * 11 10 9 34 34 H 0.96996 * 120.00317 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.46754 * 66.86116 * 23 22 3 36 36 H 1.09000 * 109.47384 * 186.86172 * 23 22 3 37 37 H 1.09001 * 109.46987 * 306.86459 * 23 22 3 38 38 H 1.08994 * 109.47111 * 63.64586 * 24 22 3 39 39 H 1.09006 * 109.46693 * 183.64109 * 24 22 3 40 40 H 1.08998 * 109.46942 * 303.63578 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6527 1.9648 -0.8749 5 6 3.5465 1.4426 -0.0411 6 8 4.1794 1.8092 0.9263 7 7 4.1904 1.0406 -1.1548 8 6 5.5795 0.9412 -1.1585 9 6 6.2459 0.6404 -2.3487 10 6 7.6292 0.5466 -2.3516 11 6 8.3104 0.7455 -1.1639 12 6 7.5819 1.0402 0.0017 13 6 8.2638 1.2465 1.2225 14 1 9.3410 1.1771 1.2577 15 6 7.5427 1.5408 2.3861 16 7 6.2386 1.6244 2.3435 17 14 8.4439 1.8142 3.9993 18 1 9.3779 2.9598 3.8567 19 1 7.4602 2.1075 5.0724 20 1 9.2101 0.5918 4.3515 21 7 6.2484 1.1272 -0.0371 22 7 1.5834 2.1234 1.2189 23 6 2.0195 1.4001 2.4208 24 6 2.0446 3.5178 1.2471 25 1 -0.3633 0.4431 -0.9273 26 1 -0.3633 -1.0245 0.0799 27 1 -0.3632 0.5815 0.8473 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.6861 0.8204 -1.9537 31 1 5.6881 0.4854 -3.2603 32 1 8.1640 0.3186 -3.2617 33 1 9.3877 0.6756 -1.1328 34 1 5.7391 1.8279 3.1497 35 1 3.1053 1.4511 2.5016 36 1 1.5677 1.8547 3.3024 37 1 1.7090 0.3576 2.3501 38 1 1.5975 4.0652 0.4175 39 1 1.7479 3.9795 2.1890 40 1 3.1305 3.5432 1.1563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:29 Heat of formation + Delta-G solvation = 13.175132 kcal Electronic energy + Delta-G solvation = -22587.276560 eV Core-core repulsion = 19402.522286 eV Total energy + Delta-G solvation = -3184.754274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43797 -39.84273 -37.54098 -35.90599 -34.96129 -33.71505 -32.23054 -31.06030 -28.69032 -28.24399 -27.34431 -24.40322 -23.80219 -23.16004 -21.91903 -20.55736 -19.50423 -18.02858 -17.91467 -16.93244 -16.41469 -16.27736 -16.12013 -15.77918 -15.51665 -15.27950 -14.82320 -14.45821 -14.14759 -13.95116 -13.73322 -13.18492 -13.01695 -12.79928 -12.75791 -12.69446 -12.59437 -12.51851 -12.38825 -12.33276 -11.84122 -11.80929 -11.54402 -11.39429 -10.91765 -10.82806 -9.89946 -9.48200 -8.84530 -8.72970 -8.07476 -6.43122 0.90683 1.24085 1.37150 1.47736 1.50665 2.11103 2.23913 2.38408 2.97689 3.02616 3.81512 3.96808 4.07285 4.13400 4.27114 4.37176 4.54952 4.65482 4.71200 4.71987 4.76017 4.83330 4.89227 4.94645 5.00667 5.04190 5.12332 5.16286 5.21563 5.30149 5.40329 5.57894 5.67283 5.86817 5.91479 5.96548 6.01772 6.15069 6.37239 6.74673 6.84399 7.07765 7.70443 8.33848 8.53947 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.007357 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.906370 B = 3805.048010 C = 5179.487429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C 0.074 3.926 4 H 0.123 0.877 5 C 0.436 3.564 6 O -0.448 6.448 7 N -0.656 5.656 8 C 0.350 3.650 9 C -0.348 4.348 10 C -0.035 4.035 11 C -0.332 4.332 12 C 0.238 3.762 13 C -0.467 4.467 14 H 0.083 0.917 15 C 0.015 3.985 16 N -0.687 5.687 17 Si 0.971 3.029 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.261 1.261 21 N -0.505 5.505 22 N -0.501 5.501 23 C 0.004 3.996 24 C 0.015 3.985 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.418 0.582 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.268 0.732 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 -0.963 -3.798 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C -0.039 4.039 4 H 0.140 0.860 5 C 0.219 3.781 6 O -0.314 6.314 7 N -0.306 5.306 8 C 0.111 3.889 9 C -0.374 4.374 10 C -0.059 4.059 11 C -0.355 4.355 12 C 0.112 3.888 13 C -0.498 4.498 14 H 0.101 0.899 15 C -0.211 4.211 16 N -0.306 5.306 17 Si 0.793 3.207 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.185 1.185 21 N -0.225 5.225 22 N -0.223 5.223 23 C -0.144 4.144 24 C -0.133 4.133 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.255 0.745 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.717 -0.433 -2.107 12.897 hybrid contribution 1.946 -0.144 -0.447 2.002 sum -10.771 -0.577 -2.554 11.084 Atomic orbital electron populations 1.21597 0.92559 1.01868 1.02974 1.21550 0.98559 0.92214 1.02362 1.22042 0.87003 0.98608 0.96215 0.85971 1.23012 0.92431 0.79137 0.83517 1.91027 1.67735 1.39753 1.32908 1.43667 1.03689 1.66990 1.16235 1.19199 0.85513 0.93110 0.91064 1.21009 0.95133 1.23844 0.97374 1.21026 0.93784 0.94218 0.96897 1.21801 0.99221 1.19433 0.95072 1.18851 0.88004 0.88672 0.93243 1.19837 0.94618 1.42583 0.92750 0.89920 1.26940 0.95922 0.94710 1.03507 1.70488 1.06627 1.24841 1.28606 0.85437 0.78744 0.79646 0.76910 1.18730 1.19821 1.18524 1.68635 1.07948 1.21955 1.23958 1.62654 1.55913 1.02345 1.01374 1.22645 1.00390 0.98878 0.92450 1.22480 0.98678 0.89303 1.02856 0.91453 0.92135 0.92114 0.90281 0.93193 0.74488 0.85179 0.84740 0.88005 0.92080 0.94373 0.91303 0.91197 0.90382 0.91070 0.96294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.83 71.98 0.71 -1.70 16 2 C -0.11 -2.56 5.02 30.59 0.15 -2.41 16 3 C 0.07 2.06 2.27 44.17 0.10 2.16 16 4 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 5 C 0.44 16.91 6.31 87.66 0.55 17.46 16 6 O -0.45 -21.75 7.67 -3.02 -0.02 -21.78 16 7 N -0.66 -24.85 5.38 -308.36 -1.66 -26.51 16 8 C 0.35 16.88 7.41 133.25 0.99 17.87 16 9 C -0.35 -14.96 9.96 22.72 0.23 -14.74 16 10 C -0.04 -1.54 10.15 22.40 0.23 -1.32 16 11 C -0.33 -17.03 9.83 22.87 0.22 -16.80 16 12 C 0.24 13.82 6.55 40.20 0.26 14.09 16 13 C -0.47 -26.77 9.14 23.47 0.21 -26.55 16 14 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 15 C 0.01 0.81 5.50 85.29 0.47 1.28 16 16 N -0.69 -38.88 9.11 21.84 0.20 -38.68 16 17 Si 0.97 40.87 29.56 68.60 2.03 42.90 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 N -0.51 -28.86 5.75 -186.35 -1.07 -29.93 16 22 N -0.50 -14.48 4.27 -927.73 -3.96 -18.44 16 23 C 0.00 0.14 8.88 127.69 1.13 1.27 16 24 C 0.02 0.46 9.32 127.69 1.19 1.65 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.22 7.52 -2.39 -0.02 1.20 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.39 6.11 -2.39 -0.01 1.38 16 30 H 0.42 11.66 8.70 -92.71 -0.81 10.85 16 31 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.27 14.39 8.29 -92.71 -0.77 13.62 16 35 H 0.04 1.58 5.52 -2.38 -0.01 1.57 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.08 5.83 -2.39 -0.01 2.06 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 1.98 8.11 -2.38 -0.02 1.96 16 40 H 0.02 0.73 5.66 -2.39 -0.01 0.72 16 Total: -1.00 -70.57 319.84 2.20 -68.37 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.24 Total: 31.82 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 6.45 Total: -7.75 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -6.49 Total: -113.56 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.02 Total: -21.78 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -70.57 2.20 -68.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.541 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds