Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 N 1.46899 * 109.46790 * 179.97438 * 3 2 1 5 5 C 1.46901 * 111.00170 * 293.94869 * 4 3 2 6 6 C 1.46907 * 111.00079 * 169.99593 * 4 3 2 7 7 C 1.50692 * 109.47122 * 189.99740 * 6 4 3 8 8 O 1.21272 * 120.00154 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99748 * 179.97438 * 7 6 4 10 10 C 1.39268 * 119.99910 * 185.54058 * 9 7 6 11 11 C 1.39668 * 119.57577 * 174.99974 * 10 9 7 12 12 C 1.38656 * 119.49634 * 180.02562 * 11 10 9 13 13 C 1.38343 * 118.66953 * 359.74075 * 12 11 10 14 14 C 1.40578 * 119.12908 * 0.50237 * 13 12 11 15 15 C 1.41340 * 119.78487 * 179.76607 * 14 13 12 16 16 H 1.07997 * 120.00685 * 5.86821 * 15 14 13 17 17 C 1.40033 * 119.99663 * 185.87176 * 15 14 13 18 18 N 1.30741 * 120.00090 * 5.93239 * 17 15 14 19 19 Si 1.86795 * 119.99888 * 185.93342 * 17 15 14 20 20 H 1.48504 * 109.47446 * 265.00096 * 19 17 15 21 21 H 1.48502 * 109.47474 * 25.00048 * 19 17 15 22 22 H 1.48501 * 109.47455 * 144.99976 * 19 17 15 23 23 N 1.31910 * 119.57619 * 355.01381 * 10 9 7 24 24 H 1.09004 * 109.47387 * 300.00559 * 1 2 3 25 25 H 1.09003 * 109.47043 * 60.00328 * 1 2 3 26 26 H 1.09002 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46921 * 239.99401 * 2 1 3 28 28 H 1.09001 * 109.46530 * 119.99625 * 2 1 3 29 29 H 1.08999 * 109.47688 * 59.99871 * 3 2 1 30 30 H 1.09001 * 109.47089 * 299.99283 * 3 2 1 31 31 H 1.08995 * 109.46955 * 296.04820 * 5 4 3 32 32 H 1.09003 * 109.46859 * 56.04557 * 5 4 3 33 33 H 1.08999 * 109.47161 * 176.04623 * 5 4 3 34 34 H 1.08996 * 109.46885 * 69.99717 * 6 4 3 35 35 H 1.09004 * 109.46926 * 309.99950 * 6 4 3 36 36 H 0.96998 * 120.00585 * 5.53984 * 9 7 6 37 37 H 1.08005 * 120.25273 * 359.97438 * 11 10 9 38 38 H 1.08005 * 120.66359 * 180.02562 * 12 11 10 39 39 H 1.08009 * 120.43515 * 180.24119 * 13 12 11 40 40 H 0.96999 * 120.00049 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0349 0.8858 1.2543 6 6 4.0357 2.7929 -0.2376 7 6 5.5220 2.7180 -0.4742 8 8 6.0869 1.6452 -0.4476 9 7 6.2234 3.8431 -0.7165 10 6 7.5735 3.7640 -1.0490 11 6 8.2660 4.9249 -1.4005 12 6 9.6100 4.8442 -1.7317 13 6 10.2288 3.6073 -1.6980 14 6 9.4760 2.4750 -1.3410 15 6 10.0930 1.2038 -1.3069 16 1 11.1582 1.1162 -1.4614 17 6 9.3229 0.0579 -1.0727 18 7 8.0206 0.1488 -1.0012 19 14 10.1563 -1.6005 -0.8626 20 1 10.1775 -2.3126 -2.1656 21 1 11.5483 -1.3983 -0.3864 22 1 9.4058 -2.4093 0.1313 23 7 8.1817 2.5937 -1.0281 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9563 -0.8901 31 1 3.7435 1.5264 2.0866 32 1 3.6291 -0.1144 1.4062 33 1 5.1223 0.8325 1.2002 34 1 3.8374 3.4189 0.6324 35 1 3.5496 3.2232 -1.1132 36 1 5.7879 4.7079 -0.6594 37 1 7.7583 5.8780 -1.4150 38 1 10.1639 5.7299 -2.0060 39 1 11.2755 3.5122 -1.9468 40 1 7.4872 -0.6449 -0.8387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = 5.290299 kcal Electronic energy + Delta-G solvation = -21690.233748 eV Core-core repulsion = 18505.137562 eV Total energy + Delta-G solvation = -3185.096186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99968 -39.56522 -38.04725 -35.84909 -34.79142 -34.00696 -32.21259 -31.18528 -29.05951 -27.86080 -27.34100 -24.64019 -23.46051 -22.79393 -21.60852 -20.82177 -19.51762 -17.93890 -17.67549 -16.76969 -16.64459 -16.29692 -16.23250 -15.70124 -15.52146 -15.35155 -14.88085 -14.65638 -14.16970 -13.99229 -13.71238 -13.55940 -13.00163 -12.87119 -12.70808 -12.66192 -12.62032 -12.55250 -12.33238 -12.27195 -11.90722 -11.78778 -11.44020 -11.37597 -10.81200 -10.48356 -9.88313 -9.27009 -8.97107 -8.76532 -8.07069 -6.38704 0.95232 1.27248 1.39870 1.51217 1.54547 2.20092 2.27351 2.28631 3.01285 3.10275 3.89994 4.00464 4.07790 4.16244 4.34100 4.36095 4.42409 4.51031 4.56418 4.61028 4.71308 4.77735 4.85101 4.90157 4.92814 4.97797 5.09259 5.16390 5.24970 5.31434 5.32732 5.45655 5.70474 5.89639 5.94509 6.01190 6.18102 6.22133 6.41273 6.79304 6.90856 7.10863 7.80604 8.37673 8.58188 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.005627 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.296692 B = 4974.461466 C = 6580.806401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.060 3.940 4 N -0.547 5.547 5 C 0.029 3.971 6 C 0.053 3.947 7 C 0.456 3.544 8 O -0.441 6.441 9 N -0.659 5.659 10 C 0.352 3.648 11 C -0.348 4.348 12 C -0.035 4.035 13 C -0.333 4.333 14 C 0.239 3.761 15 C -0.469 4.469 16 H 0.084 0.916 17 C 0.015 3.985 18 N -0.688 5.688 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.257 1.257 22 H -0.274 1.274 23 N -0.510 5.510 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.420 0.580 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 3.847 3.204 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.067 4.067 4 N -0.271 5.271 5 C -0.119 4.119 6 C -0.078 4.078 7 C 0.239 3.761 8 O -0.306 6.306 9 N -0.309 5.309 10 C 0.113 3.887 11 C -0.373 4.373 12 C -0.059 4.059 13 C -0.356 4.356 14 C 0.114 3.886 15 C -0.500 4.500 16 H 0.102 0.898 17 C -0.211 4.211 18 N -0.307 5.307 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.181 1.181 22 H -0.199 1.199 23 N -0.230 5.230 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.257 0.743 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.447 1.816 3.103 14.887 hybrid contribution 0.699 0.970 0.440 1.274 sum -13.748 2.786 3.543 14.467 Atomic orbital electron populations 1.21687 0.93839 1.02238 1.02357 1.21524 0.96629 0.95986 1.01805 1.22235 0.84925 0.97927 1.01636 1.61519 1.08617 1.20848 1.36154 1.22386 1.00907 0.99773 0.88860 1.21915 0.90583 0.91361 1.03926 1.21641 0.90436 0.84788 0.79220 1.91090 1.70228 1.27650 1.41659 1.43448 1.07213 1.10611 1.69626 1.19144 0.85706 0.91150 0.92710 1.20983 0.96479 0.97250 1.22564 1.21039 0.94061 0.96563 0.94286 1.21799 1.00476 0.94661 1.18700 1.18849 0.87770 0.93688 0.88308 1.19869 0.95607 0.90900 1.43646 0.89835 1.26955 0.95569 1.04035 0.94538 1.70417 1.05438 1.30068 1.24809 0.85356 0.79316 0.77241 0.78758 1.18982 1.18069 1.19938 1.68614 1.10164 1.21952 1.22241 0.92040 0.92053 0.92199 0.92823 0.92543 0.93668 0.89741 0.95161 0.90979 0.93022 0.90139 0.86144 0.74288 0.85025 0.84644 0.87962 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.48 5.87 30.59 0.18 -2.30 16 3 C 0.06 1.25 4.96 86.30 0.43 1.68 16 4 N -0.55 -16.02 4.50 -927.05 -4.17 -20.19 16 5 C 0.03 0.89 9.01 127.69 1.15 2.04 16 6 C 0.05 1.45 5.45 85.55 0.47 1.92 16 7 C 0.46 18.26 7.51 87.65 0.66 18.92 16 8 O -0.44 -22.72 10.20 -3.01 -0.03 -22.75 16 9 N -0.66 -25.25 5.38 -308.37 -1.66 -26.91 16 10 C 0.35 17.23 7.43 133.25 0.99 18.22 16 11 C -0.35 -15.03 9.95 22.72 0.23 -14.80 16 12 C -0.04 -1.57 10.15 22.39 0.23 -1.34 16 13 C -0.33 -17.27 9.83 22.87 0.22 -17.04 16 14 C 0.24 14.12 6.53 40.20 0.26 14.38 16 15 C -0.47 -27.35 9.13 23.47 0.21 -27.14 16 16 H 0.08 4.58 7.85 -2.91 -0.02 4.56 16 17 C 0.01 0.83 5.48 85.29 0.47 1.29 16 18 N -0.69 -40.33 9.18 21.84 0.20 -40.13 16 19 Si 0.97 41.72 29.56 68.60 2.03 43.75 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 N -0.51 -29.76 5.77 -186.36 -1.08 -30.83 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.21 6.47 -2.39 -0.02 1.19 16 29 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.08 1.56 7.93 -2.39 -0.02 1.54 16 31 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 2.06 6.30 -2.39 -0.02 2.04 16 33 H 0.05 2.09 5.88 -2.39 -0.01 2.08 16 34 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 35 H 0.12 2.64 7.93 -2.39 -0.02 2.62 16 36 H 0.42 11.51 8.70 -92.71 -0.81 10.70 16 37 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 Total: -1.00 -75.00 327.62 1.73 -73.27 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.23 Total: 29.38 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.21 Total: -5.58 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -6.71 Total: -118.06 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.03 Total: -22.75 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -75.00 1.73 -73.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.562 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds