Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47237 * 2 1 4 4 N 1.46896 * 109.47326 * 119.99692 * 2 1 3 5 5 C 1.46900 * 110.99996 * 146.59303 * 4 2 1 6 6 C 1.50702 * 109.47207 * 290.77917 * 5 4 2 7 7 H 1.07997 * 119.99720 * 4.23081 * 6 5 4 8 8 C 1.37880 * 119.99739 * 184.22505 * 6 5 4 9 9 N 1.31512 * 120.00248 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99708 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46912 * 90.00251 * 10 8 6 12 12 H 1.48498 * 109.47250 * 210.00139 * 10 8 6 13 13 H 1.48503 * 109.47214 * 330.00480 * 10 8 6 14 14 C 1.46896 * 111.00391 * 270.54998 * 4 2 1 15 15 C 1.50696 * 109.47223 * 69.64494 * 14 4 2 16 16 C 1.32562 * 120.00584 * 121.23698 * 15 14 4 17 17 C 1.47823 * 119.99707 * 7.85250 * 16 15 14 18 18 C 1.39565 * 120.12826 * 38.99716 * 17 16 15 19 19 C 1.37959 * 119.90826 * 179.97438 * 18 17 16 20 20 C 1.38323 * 120.16969 * 359.97438 * 19 18 17 21 21 C 1.38552 * 120.26199 * 359.97438 * 20 19 18 22 22 F 1.35093 * 119.95557 * 180.02562 * 21 20 19 23 23 C 1.38222 * 120.08473 * 359.79153 * 21 20 19 24 24 H 1.09001 * 109.46950 * 311.51915 * 1 2 3 25 25 H 1.09003 * 109.47080 * 71.52193 * 1 2 3 26 26 H 1.09004 * 109.47267 * 191.52411 * 1 2 3 27 27 H 1.08998 * 109.47447 * 240.00238 * 2 1 3 28 28 H 1.08996 * 109.47204 * 173.55161 * 3 2 1 29 29 H 1.09002 * 109.46779 * 293.55273 * 3 2 1 30 30 H 1.08999 * 109.46901 * 53.54697 * 3 2 1 31 31 H 1.09001 * 109.47180 * 50.78133 * 5 4 2 32 32 H 1.09004 * 109.46860 * 170.77823 * 5 4 2 33 33 H 0.96997 * 120.00094 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47145 * 309.64453 * 14 4 2 35 35 H 1.09002 * 109.47424 * 189.64779 * 14 4 2 36 36 H 1.07999 * 120.00008 * 301.22932 * 15 14 4 37 37 H 1.07999 * 120.00944 * 188.13571 * 16 15 14 38 38 H 1.08003 * 120.04587 * 0.02562 * 18 17 16 39 39 H 1.08006 * 119.91219 * 180.02562 * 19 18 17 40 40 H 1.07997 * 119.87186 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.08231 * 180.24984 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.2745 -1.4037 0.9212 6 6 2.9994 -2.5684 0.0054 7 1 2.0063 -2.7210 -0.3907 8 6 4.0156 -3.4390 -0.3270 9 7 5.2248 -3.2533 0.1555 10 14 3.6747 -4.8823 -1.4629 11 1 3.9040 -4.4691 -2.8707 12 1 4.5841 -6.0058 -1.1224 13 1 2.2649 -5.3193 -1.2986 14 6 2.1828 0.2448 2.3187 15 6 0.8274 0.7029 2.7920 16 6 0.4580 0.4934 4.0478 17 6 1.4335 -0.0297 5.0276 18 6 2.7571 0.4121 5.0026 19 6 3.6636 -0.0788 5.9195 20 6 3.2638 -1.0072 6.8637 21 6 1.9513 -1.4499 6.8955 22 9 1.5674 -2.3563 7.8207 23 6 1.0330 -0.9615 5.9850 24 1 -0.3633 0.6812 0.7695 25 1 -0.3633 0.3257 -0.9747 26 1 -0.3634 -1.0070 0.2053 27 1 1.8933 -0.5138 -0.8900 28 1 3.1238 1.4447 0.1154 29 1 1.7739 1.9220 -0.9421 30 1 1.5854 1.9886 0.8266 31 1 3.9792 -0.7236 0.4426 32 1 3.6999 -1.7690 1.8560 33 1 5.9395 -3.8660 -0.0780 34 1 2.7630 1.1068 1.9893 35 1 2.7041 -0.2529 3.1364 36 1 0.1568 1.2019 2.1081 37 1 -0.5567 0.7006 4.3541 38 1 3.0712 1.1379 4.2670 39 1 4.6878 0.2634 5.9004 40 1 3.9773 -1.3879 7.5794 41 1 0.0090 -1.3036 6.0125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893960028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = 9.549711 kcal Electronic energy + Delta-G solvation = -21493.358157 eV Core-core repulsion = 18288.526711 eV Total energy + Delta-G solvation = -3204.831446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79306 -39.35685 -37.87484 -34.23417 -32.81439 -31.08063 -30.58417 -29.48374 -27.40586 -26.53473 -24.79721 -22.78840 -22.25865 -21.95573 -19.35681 -18.99238 -16.81915 -16.31745 -16.14462 -16.11278 -15.58816 -15.38176 -14.79227 -14.58710 -14.10137 -13.72411 -13.25223 -13.12600 -13.02271 -12.84087 -12.46851 -12.15866 -11.83293 -11.74138 -11.64113 -11.43641 -11.05332 -10.95520 -10.78989 -10.71359 -10.62128 -10.29563 -9.88832 -9.76707 -9.53985 -9.19249 -8.66344 -8.43343 -8.11151 -7.17579 -6.01446 -4.02170 1.04790 1.30081 2.50219 3.32215 3.38735 3.43403 3.75837 4.33441 4.44221 4.76634 4.90058 5.01613 5.09854 5.21215 5.31370 5.35004 5.44572 5.46961 5.61364 5.67904 5.91456 5.93573 5.94430 6.08875 6.14637 6.17308 6.23527 6.28320 6.29197 6.37778 6.43256 6.50480 6.74292 6.81785 6.86432 6.94500 7.06690 7.31087 7.35536 7.83829 8.12612 8.25682 8.57044 9.05382 9.61717 11.09233 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.005412 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.278405 B = 5171.988793 C = 6357.396893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 C -0.177 4.177 4 N -0.523 5.523 5 C 0.195 3.805 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.052 3.948 15 C -0.101 4.101 16 C -0.150 4.150 17 C -0.009 4.009 18 C -0.121 4.121 19 C -0.089 4.089 20 C -0.160 4.160 21 C 0.096 3.904 22 F -0.144 7.144 23 C -0.148 4.148 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.054 0.946 31 H -0.012 1.012 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 10.000 9.222 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 C -0.235 4.235 4 N -0.247 5.247 5 C 0.070 3.930 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.075 4.075 15 C -0.119 4.119 16 C -0.169 4.169 17 C -0.009 4.009 18 C -0.139 4.139 19 C -0.107 4.107 20 C -0.179 4.179 21 C 0.077 3.923 22 F -0.123 7.123 23 C -0.167 4.167 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.006 0.994 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.821 9.510 9.385 15.002 hybrid contribution 0.471 -0.527 -0.726 1.014 sum -6.350 8.983 8.658 14.000 Atomic orbital electron populations 1.22045 0.96031 1.02063 0.99720 1.21649 0.94630 0.91736 0.95402 1.22462 1.01235 0.98823 1.00981 1.62368 1.33645 1.25029 1.03686 1.19744 0.84141 0.92391 0.96755 1.21151 0.95811 1.09734 1.27534 0.91921 1.24971 0.95055 0.97985 0.96559 1.69952 1.01052 1.37952 1.44900 0.86531 0.78220 0.82109 0.80773 1.20780 1.21286 1.19791 1.21849 0.93568 0.95808 0.96316 1.23722 0.98362 0.94832 0.95027 1.21457 0.97807 1.04109 0.93561 1.18873 0.93568 0.94562 0.93934 1.21482 0.92549 1.01203 0.98652 1.20933 0.99888 0.96021 0.93900 1.21120 0.94531 1.00448 1.01804 1.17600 0.93762 0.91246 0.89721 1.91475 1.91792 1.64967 1.64070 1.21185 1.00020 0.99444 0.96027 0.93246 0.93782 0.91962 0.89398 0.92813 0.93181 0.92753 0.99410 0.95122 0.92983 0.93896 0.89483 0.86029 0.86236 0.84944 0.84993 0.85097 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.97 37.16 0.33 -1.87 16 2 C 0.07 1.38 2.58 -67.71 -0.17 1.20 16 3 C -0.18 -2.74 7.78 37.16 0.29 -2.45 16 4 N -0.52 -10.90 4.34 -229.52 -1.00 -11.89 16 5 C 0.19 4.99 4.66 -4.97 -0.02 4.96 16 6 C -0.50 -14.06 8.28 -34.44 -0.29 -14.34 16 7 H 0.06 1.74 7.59 -52.49 -0.40 1.34 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 10 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.05 0.89 3.41 -4.98 -0.02 0.87 16 15 C -0.10 -1.45 7.87 -36.22 -0.29 -1.73 16 16 C -0.15 -1.99 9.79 -37.57 -0.37 -2.36 16 17 C -0.01 -0.13 5.18 -105.02 -0.54 -0.67 16 18 C -0.12 -1.64 7.25 -39.19 -0.28 -1.92 16 19 C -0.09 -1.13 10.03 -39.65 -0.40 -1.53 16 20 C -0.16 -2.09 10.02 -39.43 -0.40 -2.48 16 21 C 0.10 1.36 7.29 -39.47 -0.29 1.08 16 22 F -0.14 -2.09 17.26 2.25 0.04 -2.05 16 23 C -0.15 -2.07 9.76 -39.12 -0.38 -2.45 16 24 H 0.05 0.68 4.91 -51.93 -0.25 0.42 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.86 6.84 -51.93 -0.36 1.51 16 28 H 0.05 0.90 7.42 -51.93 -0.39 0.52 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.75 5.56 -51.93 -0.29 0.46 16 31 H -0.01 -0.32 7.91 -51.93 -0.41 -0.73 16 32 H 0.03 0.86 7.82 -51.93 -0.41 0.45 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.04 0.71 5.57 -51.93 -0.29 0.42 16 35 H 0.09 1.59 4.14 -51.93 -0.21 1.37 16 36 H 0.12 1.58 4.61 -52.49 -0.24 1.33 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.68 6.48 -52.48 -0.34 1.34 16 39 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -29.93 327.88 -8.90 -38.83 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.68 Total: 1.59 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.92 Total: -22.23 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.26 Total: -37.80 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.93 -8.90 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893960028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.379 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds