Wall clock time and date at job start Mon Mar 30 2020 02:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47039 * 2 1 4 4 N 1.46897 * 109.46853 * 120.00373 * 2 1 3 5 5 C 1.46902 * 110.99789 * 151.69938 * 4 2 1 6 6 C 1.50700 * 109.47072 * 287.39555 * 5 4 2 7 7 H 1.08004 * 120.00008 * 4.87259 * 6 5 4 8 8 C 1.37883 * 120.00025 * 184.87602 * 6 5 4 9 9 N 1.31514 * 119.99735 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00071 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47600 * 89.99806 * 10 8 6 12 12 H 1.48500 * 109.47034 * 210.00213 * 10 8 6 13 13 H 1.48503 * 109.47135 * 329.99736 * 10 8 6 14 14 C 1.46902 * 110.99915 * 275.64619 * 4 2 1 15 15 C 1.50704 * 109.46617 * 78.49953 * 14 4 2 16 16 C 1.32561 * 120.00203 * 120.59076 * 15 14 4 17 17 C 1.47812 * 120.00308 * 179.97438 * 16 15 14 18 18 C 1.39557 * 120.13279 * 179.97438 * 17 16 15 19 19 C 1.37955 * 119.91052 * 179.97438 * 18 17 16 20 20 C 1.38328 * 120.16844 * 359.97438 * 19 18 17 21 21 C 1.38541 * 120.26442 * 0.04134 * 20 19 18 22 22 F 1.35098 * 119.95984 * 179.97438 * 21 20 19 23 23 C 1.38231 * 120.08500 * 359.95779 * 21 20 19 24 24 H 1.08990 * 109.47438 * 316.50074 * 1 2 3 25 25 H 1.09010 * 109.46880 * 76.50061 * 1 2 3 26 26 H 1.09005 * 109.47348 * 196.49495 * 1 2 3 27 27 H 1.09003 * 109.46963 * 239.99872 * 2 1 3 28 28 H 1.09005 * 109.47126 * 170.62914 * 3 2 1 29 29 H 1.08994 * 109.47485 * 290.62839 * 3 2 1 30 30 H 1.08997 * 109.47318 * 50.63068 * 3 2 1 31 31 H 1.09000 * 109.47299 * 47.39493 * 5 4 2 32 32 H 1.08997 * 109.47141 * 167.39963 * 5 4 2 33 33 H 0.97004 * 119.99885 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46935 * 318.50091 * 14 4 2 35 35 H 1.08997 * 109.47214 * 198.49360 * 14 4 2 36 36 H 1.08001 * 119.99768 * 300.58058 * 15 14 4 37 37 H 1.08002 * 119.99862 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.04192 * 359.70196 * 18 17 16 39 39 H 1.08005 * 119.91876 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.86791 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.07988 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3335 -1.3026 0.9555 6 6 3.1710 -2.5053 0.0621 7 1 2.2026 -2.7426 -0.3532 8 6 4.2584 -3.3028 -0.2250 9 7 4.1164 -4.3527 -1.0043 10 14 5.9331 -2.8929 0.4938 11 1 6.0910 -3.5768 1.8025 12 1 6.9965 -3.3514 -0.4358 13 1 6.0432 -1.4245 0.6862 14 6 2.0678 0.2187 2.3506 15 6 0.6804 0.3911 2.9131 16 6 0.4292 0.0587 4.1715 17 6 -0.9315 0.2283 4.7234 18 6 -1.1990 -0.1213 6.0477 19 6 -2.4705 0.0395 6.5582 20 6 -3.4807 0.5468 5.7609 21 6 -3.2231 0.8959 4.4452 22 9 -4.2144 1.3904 3.6719 23 6 -1.9530 0.7393 3.9227 24 1 -0.3634 0.7454 0.7073 25 1 -0.3633 0.2399 -0.9994 26 1 -0.3634 -0.9854 0.2918 27 1 1.8933 -0.5139 -0.8900 28 1 3.1171 1.4471 0.1673 29 1 1.8198 1.9057 -0.9617 30 1 1.5465 2.0023 0.7944 31 1 3.9871 -0.5765 0.4720 32 1 3.7724 -1.6114 1.9042 33 1 4.8814 -4.9140 -1.2060 34 1 2.4536 1.1869 2.0316 35 1 2.7212 -0.1983 3.1169 36 1 -0.1093 0.7858 2.2909 37 1 1.2188 -0.3362 4.7936 38 1 -0.4128 -0.5213 6.6707 39 1 -2.6778 -0.2315 7.5829 40 1 -4.4743 0.6711 6.1657 41 1 -1.7522 1.0119 2.8971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893960030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:22 Heat of formation + Delta-G solvation = -12.859384 kcal Electronic energy + Delta-G solvation = -20968.394676 eV Core-core repulsion = 17762.591499 eV Total energy + Delta-G solvation = -3205.803177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.89823 -40.16015 -39.49929 -35.47825 -34.76882 -32.79257 -31.54665 -31.39611 -29.04918 -28.08617 -26.26709 -24.01850 -23.57581 -23.00182 -20.65544 -20.29277 -18.84463 -18.47583 -17.29822 -17.09761 -16.74136 -16.59564 -16.41030 -16.10423 -15.36636 -14.85559 -14.80981 -14.56889 -14.51357 -14.29146 -13.72300 -13.58493 -13.50571 -13.41952 -12.94841 -12.85088 -12.54837 -12.47442 -12.30196 -12.13015 -11.96549 -11.79718 -11.64379 -11.46055 -11.35957 -11.01003 -10.75656 -9.79807 -9.13871 -8.84224 -8.26530 -6.29060 -0.12125 0.25158 1.35171 1.36487 1.47109 1.53159 2.35369 2.81411 3.06482 3.25926 3.35302 3.71360 3.76038 4.05931 4.07694 4.18096 4.23933 4.27474 4.38472 4.50083 4.57399 4.60432 4.71555 4.74658 4.80035 4.90653 4.93185 4.99834 5.02904 5.09159 5.15926 5.18315 5.30253 5.36923 5.43970 5.49594 5.57166 5.75407 5.87201 5.97141 6.06877 6.47451 6.71189 6.77798 7.34087 8.90566 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.003789 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.787425 B = 7388.293718 C = 7868.734143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.072 3.928 3 C -0.169 4.169 4 N -0.534 5.534 5 C 0.174 3.826 6 C -0.512 4.512 7 H 0.033 0.967 8 C 0.006 3.994 9 N -0.951 5.951 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.250 1.250 14 C 0.063 3.937 15 C -0.114 4.114 16 C -0.135 4.135 17 C -0.027 4.027 18 C -0.126 4.126 19 C -0.084 4.084 20 C -0.162 4.162 21 C 0.079 3.921 22 F -0.151 7.151 23 C -0.169 4.169 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.075 0.925 31 H -0.010 1.010 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 14.239 15.267 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.036 4.036 3 C -0.227 4.227 4 N -0.257 5.257 5 C 0.047 3.953 6 C -0.550 4.550 7 H 0.052 0.948 8 C -0.191 4.191 9 N -0.592 5.592 10 Si 0.771 3.229 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.174 1.174 14 C -0.064 4.064 15 C -0.132 4.132 16 C -0.154 4.154 17 C -0.027 4.027 18 C -0.144 4.144 19 C -0.102 4.102 20 C -0.181 4.181 21 C 0.060 3.940 22 F -0.130 7.130 23 C -0.188 4.188 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.007 0.993 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.806 13.737 15.258 23.201 hybrid contribution 1.121 0.172 -0.814 1.396 sum -9.685 13.910 14.444 22.269 Atomic orbital electron populations 1.21919 0.93970 1.01395 1.01594 1.21660 0.96196 0.92918 0.92836 1.22345 1.00557 0.96807 1.02999 1.62097 1.27284 1.31946 1.04400 1.19945 0.87098 0.93043 0.95249 1.21276 0.95533 1.09763 1.28430 0.94836 1.25857 1.03310 0.94514 0.95395 1.70062 1.32427 1.17554 1.39117 0.85707 0.78618 0.79885 0.78663 1.18994 1.20934 1.17353 1.21472 0.94965 0.96515 0.93422 1.23573 0.97486 0.96794 0.95373 1.21704 0.94516 1.02634 0.96555 1.19022 0.92834 0.96758 0.94079 1.21671 0.98433 1.00019 0.94242 1.21325 0.91421 0.96354 1.01080 1.21479 1.02370 1.02338 0.91913 1.17861 0.85164 1.00522 0.90464 1.91469 1.60658 1.85590 1.75271 1.21393 0.91981 1.03928 1.01512 0.91260 0.91927 0.93976 0.93021 0.93685 0.91215 0.90585 0.99274 0.95455 0.92532 0.91383 0.91072 0.86158 0.85104 0.83140 0.81663 0.82909 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.68 71.98 0.62 -3.49 16 2 C 0.07 2.64 2.68 44.91 0.12 2.76 16 3 C -0.17 -4.84 7.76 71.98 0.56 -4.28 16 4 N -0.53 -21.37 4.26 -880.07 -3.75 -25.12 16 5 C 0.17 8.20 3.70 85.56 0.32 8.52 16 6 C -0.51 -29.76 8.94 25.60 0.23 -29.53 16 7 H 0.03 2.20 7.96 -2.91 -0.02 2.17 16 8 C 0.01 0.36 5.47 84.66 0.46 0.82 16 9 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 10 Si 0.95 43.91 27.37 68.60 1.88 45.79 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.25 -10.71 6.69 99.48 0.67 -10.05 16 14 C 0.06 1.96 4.99 85.56 0.43 2.38 16 15 C -0.11 -3.07 8.26 24.54 0.20 -2.87 16 16 C -0.14 -3.29 9.52 23.65 0.23 -3.06 16 17 C -0.03 -0.61 5.87 -20.13 -0.12 -0.72 16 18 C -0.13 -2.23 9.78 22.52 0.22 -2.01 16 19 C -0.08 -1.24 10.03 22.22 0.22 -1.02 16 20 C -0.16 -2.83 10.02 22.36 0.22 -2.61 16 21 C 0.08 1.79 7.29 22.34 0.16 1.96 16 22 F -0.15 -3.71 17.26 44.97 0.78 -2.93 16 23 C -0.17 -4.04 9.38 22.57 0.21 -3.83 16 24 H 0.07 1.81 5.29 -2.39 -0.01 1.80 16 25 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.05 2.29 7.03 -2.39 -0.02 2.27 16 28 H 0.04 1.37 7.19 -2.38 -0.02 1.35 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.85 6.50 -2.39 -0.02 1.83 16 31 H -0.01 -0.49 6.80 -2.39 -0.02 -0.50 16 32 H 0.03 1.26 6.80 -2.39 -0.02 1.25 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.07 1.90 5.09 -2.39 -0.01 1.89 16 35 H 0.07 2.17 7.25 -2.39 -0.02 2.15 16 36 H 0.12 3.09 3.24 -2.91 -0.01 3.09 16 37 H 0.13 2.87 7.86 -2.91 -0.02 2.85 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.13 3.11 6.17 -2.91 -0.02 3.09 16 Total: -1.00 -68.30 330.20 4.27 -64.03 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.98 Total: 14.91 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 4.09 Total: -36.99 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -3.45 Total: -84.81 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -68.30 4.27 -64.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893960030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.170 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds