Wall clock time and date at job start Mon Mar 30 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47176 * 2 1 4 4 N 1.46497 * 109.47122 * 120.00110 * 2 1 3 5 5 C 1.46508 * 119.99893 * 304.23907 * 4 2 1 6 6 C 1.50701 * 109.47084 * 270.00198 * 5 4 2 7 7 H 1.08001 * 120.00007 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99604 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99678 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47288 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46761 * 120.00218 * 10 8 6 13 13 H 1.48497 * 109.47083 * 239.99881 * 10 8 6 14 14 C 1.34773 * 120.00027 * 124.24188 * 4 2 1 15 15 O 1.21286 * 119.99874 * 185.39398 * 14 4 2 16 16 C 1.50698 * 120.00333 * 5.39599 * 14 4 2 17 17 N 1.46492 * 109.47259 * 174.85515 * 16 14 4 18 18 C 1.39008 * 120.00009 * 180.02562 * 17 16 14 19 19 C 1.39131 * 119.70308 * 0.02562 * 18 17 16 20 20 C 1.38305 * 119.09457 * 180.02562 * 19 18 17 21 21 C 1.38878 * 118.50456 * 359.97438 * 20 19 18 22 22 C 1.38018 * 119.33256 * 0.28305 * 21 20 19 23 23 N 1.31971 * 120.85354 * 359.44333 * 22 21 20 24 24 H 1.08996 * 109.47383 * 295.64699 * 1 2 3 25 25 H 1.09003 * 109.47354 * 55.64469 * 1 2 3 26 26 H 1.09002 * 109.47230 * 175.64148 * 1 2 3 27 27 H 1.09004 * 109.47473 * 239.99959 * 2 1 3 28 28 H 1.09000 * 109.47630 * 184.58608 * 3 2 1 29 29 H 1.09005 * 109.46851 * 304.58216 * 3 2 1 30 30 H 1.08996 * 109.47554 * 64.58181 * 3 2 1 31 31 H 1.08999 * 109.46752 * 30.00339 * 5 4 2 32 32 H 1.08995 * 109.46907 * 150.00130 * 5 4 2 33 33 H 0.97000 * 119.99763 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.46889 * 54.85847 * 16 14 4 35 35 H 1.08993 * 109.47103 * 294.85915 * 16 14 4 36 36 H 0.97001 * 120.00464 * 0.02562 * 17 16 14 37 37 H 1.08001 * 120.45511 * 0.02562 * 19 18 17 38 38 H 1.07997 * 120.74729 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.33393 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.57294 * 179.69966 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5894 -0.2465 2.5248 6 6 2.5497 0.7938 3.0410 7 1 3.3948 1.0945 2.4393 8 6 2.3489 1.3625 4.2808 9 7 1.3196 0.9967 5.0132 10 14 3.5397 2.6516 4.9210 11 1 4.6055 2.8846 3.9137 12 1 2.8089 3.9202 5.1702 13 1 4.1508 2.1754 6.1878 14 6 2.8621 -1.7344 1.0743 15 8 3.1893 -2.3674 2.0558 16 6 3.3991 -2.1150 -0.2813 17 7 4.3810 -3.1920 -0.1328 18 6 5.0170 -3.7122 -1.2541 19 6 4.7167 -3.2050 -2.5144 20 6 5.3565 -3.7322 -3.6214 21 6 6.2791 -4.7525 -3.4303 22 6 6.5246 -5.2114 -2.1520 23 7 5.9030 -4.6859 -1.1132 24 1 -0.3634 0.4448 0.9264 25 1 -0.3634 0.5799 -0.8484 26 1 -0.3634 -1.0247 -0.0781 27 1 1.8934 -0.5138 -0.8900 28 1 3.1269 1.4437 -0.0822 29 1 1.6111 1.9795 -0.8461 30 1 1.7453 1.9321 0.9281 31 1 0.5896 0.1825 2.4592 32 1 1.5755 -1.0978 3.2054 33 1 1.1782 1.3971 5.8853 34 1 3.8766 -1.2488 -0.7393 35 1 2.5796 -2.4552 -0.9143 36 1 4.5874 -3.5422 0.7479 37 1 3.9939 -2.4105 -2.6267 38 1 5.1441 -3.3583 -4.6121 39 1 6.7962 -5.1854 -4.2739 40 1 7.2377 -6.0081 -1.9994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900469683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:02 Heat of formation + Delta-G solvation = -16.016566 kcal Electronic energy + Delta-G solvation = -21407.972367 eV Core-core repulsion = 18221.952246 eV Total energy + Delta-G solvation = -3186.020121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31132 -40.66655 -37.78733 -36.44761 -34.92838 -33.27568 -32.46510 -31.31211 -29.72823 -28.06982 -27.54468 -24.89861 -24.28920 -23.12410 -22.60886 -19.85451 -19.06148 -18.62720 -17.79848 -17.48531 -16.94017 -16.69046 -16.47287 -16.11720 -15.35735 -15.18630 -15.07811 -14.84903 -14.51460 -14.21289 -14.03403 -13.77891 -13.61497 -13.35088 -13.22072 -12.84605 -12.76332 -12.61537 -12.49477 -12.22076 -12.10546 -11.67383 -11.50333 -11.25397 -10.75005 -10.64022 -10.62236 -10.30918 -9.48743 -8.66735 -8.21328 -6.32964 0.45077 0.61915 1.34813 1.37562 1.48024 1.64575 1.91149 2.35307 2.50234 3.07261 3.09066 3.47368 3.80563 3.96274 4.08418 4.18972 4.25459 4.32462 4.35092 4.41793 4.46105 4.56845 4.83897 4.89913 4.95293 5.00386 5.06889 5.13163 5.20218 5.22725 5.45358 5.47031 5.59813 5.63296 5.71909 5.85190 6.03705 6.08772 6.53572 6.69198 6.77800 7.24112 7.30303 7.40183 8.86306 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.004161 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.568715 B = 6727.860526 C = 7258.936021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 C -0.158 4.158 4 N -0.589 5.589 5 C 0.261 3.739 6 C -0.527 4.527 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.271 1.271 13 H -0.286 1.286 14 C 0.491 3.509 15 O -0.593 6.593 16 C 0.125 3.875 17 N -0.726 5.726 18 C 0.382 3.618 19 C -0.249 4.249 20 C -0.032 4.032 21 C -0.235 4.235 22 C 0.130 3.870 23 N -0.586 5.586 24 H 0.038 0.962 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.032 0.968 32 H -0.007 1.007 33 H 0.265 0.735 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.401 0.599 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -4.525 -22.457 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.021 3.979 3 C -0.216 4.216 4 N -0.320 5.320 5 C 0.140 3.860 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.786 3.214 11 H -0.191 1.191 12 H -0.196 1.196 13 H -0.212 1.212 14 C 0.279 3.721 15 O -0.474 6.474 16 C -0.003 4.003 17 N -0.360 5.360 18 C 0.147 3.853 19 C -0.274 4.274 20 C -0.057 4.057 21 C -0.258 4.258 22 C -0.027 4.027 23 N -0.305 5.305 24 H 0.057 0.943 25 H 0.117 0.883 26 H 0.077 0.923 27 H 0.137 0.863 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.011 0.989 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.237 0.763 37 H 0.169 0.831 38 H 0.184 0.816 39 H 0.178 0.822 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.841 -4.928 -20.993 21.903 hybrid contribution 0.295 0.724 1.027 1.291 sum 4.136 -4.204 -19.966 20.819 Atomic orbital electron populations 1.22134 0.94105 1.02538 1.02836 1.21504 0.95471 0.94194 0.86775 1.22152 1.00836 0.95776 1.02824 1.48288 1.44833 1.30018 1.08874 1.18726 0.95079 0.93184 0.79000 1.21703 1.10872 1.21732 1.02296 0.92542 1.25784 0.97188 0.99320 0.96849 1.70059 1.30254 1.44429 1.12208 0.85470 0.79017 0.78885 0.78068 1.19094 1.19573 1.21240 1.21057 0.79317 0.80369 0.91368 1.90652 1.60594 1.54259 1.41924 1.21189 0.93412 0.91867 0.93787 1.44364 1.44332 1.39591 1.07745 1.18609 0.89573 0.89958 0.87137 1.21705 1.07799 1.06702 0.91181 1.21771 0.91754 0.92813 0.99384 1.22173 1.03340 1.01559 0.98708 1.22875 0.95199 0.96723 0.87940 1.67082 1.12268 1.13769 1.37376 0.94308 0.88252 0.92307 0.86254 0.93356 0.88969 0.93613 0.95036 0.98932 0.92620 0.87012 0.86164 0.76311 0.83087 0.81568 0.82205 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.19 71.98 0.66 -3.36 16 2 C 0.12 3.40 3.12 44.99 0.14 3.54 16 3 C -0.16 -4.46 8.74 71.98 0.63 -3.83 16 4 N -0.59 -23.54 2.39 -802.14 -1.92 -25.45 16 5 C 0.26 13.65 4.73 85.63 0.41 14.06 16 6 C -0.53 -29.44 7.72 25.60 0.20 -29.24 16 7 H 0.06 3.11 7.59 -2.91 -0.02 3.09 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 10 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 C 0.49 19.71 7.73 87.66 0.68 20.39 16 15 O -0.59 -30.35 15.23 -3.05 -0.05 -30.40 16 16 C 0.12 3.42 3.70 85.63 0.32 3.73 16 17 N -0.73 -22.92 5.70 -348.83 -1.99 -24.91 16 18 C 0.38 10.78 7.65 133.06 1.02 11.80 16 19 C -0.25 -5.08 9.33 22.50 0.21 -4.87 16 20 C -0.03 -0.49 10.17 22.44 0.23 -0.26 16 21 C -0.24 -3.75 10.10 22.37 0.23 -3.53 16 22 C 0.13 2.77 11.17 84.62 0.95 3.72 16 23 N -0.59 -17.31 10.39 -193.26 -2.01 -19.32 16 24 H 0.04 1.25 6.34 -2.39 -0.02 1.23 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.12 2.23 5.85 -2.39 -0.01 2.22 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.04 1.68 6.60 -2.39 -0.02 1.66 16 31 H 0.03 1.68 6.13 -2.39 -0.01 1.66 16 32 H -0.01 -0.46 7.35 -2.39 -0.02 -0.48 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.11 2.51 7.63 -2.39 -0.02 2.49 16 35 H 0.12 2.45 7.51 -2.39 -0.02 2.43 16 36 H 0.40 15.07 7.57 -92.71 -0.70 14.37 16 37 H 0.15 2.29 6.71 -2.91 -0.02 2.27 16 38 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -77.04 331.01 2.82 -74.23 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.35 Total: 21.61 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 6.12 Total: 13.02 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -5.63 Total: -125.31 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.05 Total: -30.40 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -77.04 2.82 -74.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900469683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.211 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds