Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47373 * 2 1 4 4 H 1.09006 * 109.47271 * 54.99607 * 3 2 1 5 5 C 1.50701 * 109.47124 * 174.99968 * 3 2 1 6 6 H 1.07996 * 120.00400 * 120.00166 * 5 3 2 7 7 C 1.37884 * 119.99636 * 299.99561 * 5 3 2 8 8 N 1.31515 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99696 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47355 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46908 * 120.00460 * 9 7 5 12 12 H 1.48494 * 109.47270 * 240.00519 * 9 7 5 13 13 N 1.46499 * 109.47311 * 294.99671 * 3 2 1 14 14 C 1.34778 * 119.99857 * 85.00095 * 13 3 2 15 15 O 1.21603 * 120.00056 * 0.02562 * 14 13 3 16 16 C 1.47426 * 120.00271 * 180.02562 * 14 13 3 17 17 C 1.39978 * 120.60420 * 5.74396 * 16 14 13 18 18 C 1.38343 * 118.36425 * 179.73032 * 17 16 14 19 19 C 1.38373 * 119.50782 * 0.47942 * 18 17 16 20 20 C 1.50695 * 119.39260 * 179.78980 * 19 18 17 21 21 N 1.31848 * 121.21692 * 359.51101 * 19 18 17 22 22 C 1.32429 * 121.77908 * 0.25281 * 21 19 18 23 23 N 1.38263 * 119.83008 * 180.02562 * 22 21 19 24 24 C 1.46497 * 119.99801 * 354.54974 * 23 22 21 25 25 H 1.09001 * 109.46933 * 300.00716 * 1 2 3 26 26 H 1.09001 * 109.46378 * 59.99710 * 1 2 3 27 27 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46677 * 239.99744 * 2 1 3 29 29 H 1.09001 * 109.46378 * 120.00290 * 2 1 3 30 30 H 0.96996 * 119.99428 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00440 * 265.00144 * 13 3 2 32 32 H 1.07996 * 120.82188 * 0.02562 * 17 16 14 33 33 H 1.07995 * 120.24454 * 180.23942 * 18 17 16 34 34 H 1.08997 * 109.47178 * 269.72783 * 20 19 18 35 35 H 1.09005 * 109.47243 * 29.72605 * 20 19 18 36 36 H 1.09002 * 109.47387 * 149.72471 * 20 19 18 37 37 H 0.97001 * 120.00069 * 174.54200 * 23 22 21 38 38 H 1.08998 * 109.47467 * 59.99504 * 24 23 22 39 39 H 1.09001 * 109.47096 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.47291 * 299.99533 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4062 0.3366 2.1730 9 14 6.0051 0.8798 1.3813 10 1 6.5990 1.5448 0.1938 11 1 6.4000 1.6154 2.6093 12 1 6.4962 -0.5192 1.4628 13 7 1.6527 2.0974 -1.2518 14 6 0.4354 2.6644 -1.3670 15 8 -0.3411 2.6327 -0.4317 16 6 0.0452 3.3231 -2.6269 17 6 0.8788 3.2641 -3.7498 18 6 0.4645 3.8939 -4.9098 19 6 -0.7448 4.5662 -4.9256 20 6 -1.1915 5.2553 -6.1892 21 7 -1.5161 4.6105 -3.8572 22 6 -1.1705 4.0213 -2.7226 23 7 -2.0105 4.0929 -1.6268 24 6 -3.2204 4.9169 -1.6839 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0618 2.9496 31 1 2.2721 2.1231 -1.9978 32 1 1.8201 2.7359 -3.7130 33 1 1.0820 3.8642 -5.7952 34 1 -0.8289 6.2832 -6.1901 35 1 -0.7882 4.7271 -7.0532 36 1 -2.2804 5.2541 -6.2383 37 1 -1.7989 3.5973 -0.8202 38 1 -3.8652 4.5606 -2.4872 39 1 -3.7517 4.8486 -0.7346 40 1 -2.9448 5.9545 -1.8725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907387300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = -4.013729 kcal Electronic energy + Delta-G solvation = -21769.410444 eV Core-core repulsion = 18583.910805 eV Total energy + Delta-G solvation = -3185.499639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47884 -38.59921 -35.95821 -34.88444 -33.18195 -32.14035 -31.11714 -30.76434 -28.12490 -27.05125 -25.56924 -23.24730 -22.62511 -22.08113 -20.58633 -19.41203 -17.73056 -16.98820 -16.64809 -15.89579 -15.35355 -15.02401 -14.70645 -14.29899 -14.27095 -13.94918 -13.62178 -13.58538 -12.76862 -12.67322 -12.49850 -12.39006 -12.09249 -11.97944 -11.92371 -11.53046 -11.28613 -10.98382 -10.87216 -10.34005 -10.22192 -10.11406 -9.68256 -9.60663 -9.42570 -9.07133 -8.96787 -8.53627 -7.95358 -7.43986 -6.15414 -4.24810 1.03221 1.62688 3.21862 3.29995 3.32365 3.41406 3.51721 4.06057 4.21562 4.34731 4.51172 4.81135 5.15339 5.16256 5.22216 5.40116 5.42276 5.49919 5.58262 5.65126 5.66240 5.88619 5.94471 6.06912 6.29646 6.36954 6.43600 6.62110 6.64577 7.02119 7.15721 7.28320 7.35877 7.42064 7.58244 7.68602 7.73195 7.87148 8.14198 8.41300 8.61238 8.74317 9.07912 9.42582 10.89934 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023317 B = 0.004639 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.546363 B = 6034.715870 C = 6741.874061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.697 5.697 14 C 0.562 3.438 15 O -0.558 6.558 16 C -0.261 4.261 17 C 0.003 3.997 18 C -0.251 4.251 19 C 0.194 3.806 20 C -0.104 4.104 21 N -0.554 5.554 22 C 0.453 3.547 23 N -0.707 5.707 24 C 0.097 3.903 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.429 0.571 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 6.799 -13.057 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.343 5.343 14 C 0.349 3.651 15 O -0.440 6.440 16 C -0.271 4.271 17 C -0.023 4.023 18 C -0.274 4.274 19 C 0.053 3.947 20 C -0.162 4.162 21 N -0.273 5.273 22 C 0.213 3.787 23 N -0.350 5.350 24 C -0.048 4.048 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.281 0.719 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.947 7.160 -12.099 16.665 hybrid contribution 2.193 -0.666 0.055 2.292 sum -6.754 6.495 -12.044 15.260 Atomic orbital electron populations 1.21841 0.98351 0.98092 1.01193 1.21937 0.92633 0.99703 1.02350 1.18845 0.94341 0.89224 0.80786 0.93094 1.21260 0.90643 1.39056 1.06361 0.92028 1.24880 0.98635 0.94746 0.95349 1.69901 1.35057 1.37573 1.09348 0.86401 0.84826 0.77785 0.78145 1.19729 1.20876 1.20853 1.46359 1.14113 1.55239 1.18625 1.17774 0.82818 0.78403 0.86071 1.90337 1.51187 1.61895 1.40628 1.20421 0.98048 1.11396 0.97280 1.21542 0.97200 0.92510 0.91083 1.21466 0.99603 1.06578 0.99723 1.21059 0.89571 0.91150 0.92911 1.20747 1.02679 1.00195 0.92546 1.67093 1.35308 1.25927 0.99015 1.18270 0.86374 0.87353 0.86743 1.45461 1.23322 1.50945 1.15289 1.21454 0.86952 0.94955 1.01488 0.93098 0.94313 0.95841 0.95015 0.88196 0.92596 0.77829 0.84617 0.85025 0.90304 0.90586 0.90614 0.71938 0.92784 0.91287 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.66 2.24 -69.09 -0.15 6.50 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.32 11.29 55.43 0.63 -23.70 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.70 -14.39 4.97 -56.01 -0.28 -14.67 16 14 C 0.56 11.33 6.32 -12.52 -0.08 11.26 16 15 O -0.56 -12.35 10.81 5.28 0.06 -12.30 16 16 C -0.26 -4.51 5.91 -104.64 -0.62 -5.13 16 17 C 0.00 0.04 9.63 -38.89 -0.37 -0.33 16 18 C -0.25 -3.09 9.70 -39.49 -0.38 -3.47 16 19 C 0.19 2.50 6.78 -82.54 -0.56 1.94 16 20 C -0.10 -0.91 10.16 36.00 0.37 -0.55 16 21 N -0.55 -8.53 9.46 -8.44 -0.08 -8.61 16 22 C 0.45 7.71 7.48 -155.19 -1.16 6.55 16 23 N -0.71 -11.54 5.73 -67.01 -0.38 -11.92 16 24 C 0.10 1.21 10.72 59.85 0.64 1.85 16 25 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 26 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 7.02 6.67 -40.82 -0.27 6.75 16 32 H 0.14 1.66 6.55 -52.49 -0.34 1.32 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.43 7.68 5.33 -40.92 -0.22 7.46 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -29.75 324.78 -8.31 -38.06 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.58 Total: 12.71 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.55 Total: 0.19 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.12 Total: -58.90 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.06 Total: -12.30 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.75 -8.31 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907387300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.047 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds