Wall clock time and date at job start Mon Mar 30 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47373 * 2 1 4 4 H 1.09006 * 109.47271 * 54.99607 * 3 2 1 5 5 C 1.50701 * 109.47124 * 174.99968 * 3 2 1 6 6 H 1.07996 * 120.00400 * 120.00166 * 5 3 2 7 7 C 1.37884 * 119.99636 * 299.99561 * 5 3 2 8 8 N 1.31515 * 120.00000 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99696 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47355 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46908 * 120.00460 * 9 7 5 12 12 H 1.48494 * 109.47270 * 240.00519 * 9 7 5 13 13 N 1.46499 * 109.47311 * 294.99671 * 3 2 1 14 14 C 1.34778 * 119.99857 * 85.00095 * 13 3 2 15 15 O 1.21603 * 120.00056 * 0.02562 * 14 13 3 16 16 C 1.47426 * 120.00271 * 180.02562 * 14 13 3 17 17 C 1.39978 * 120.60420 * 5.74396 * 16 14 13 18 18 C 1.38343 * 118.36425 * 179.73032 * 17 16 14 19 19 C 1.38373 * 119.50782 * 0.47942 * 18 17 16 20 20 C 1.50695 * 119.39260 * 179.78980 * 19 18 17 21 21 N 1.31848 * 121.21692 * 359.51101 * 19 18 17 22 22 C 1.32429 * 121.77908 * 0.25281 * 21 19 18 23 23 N 1.38263 * 119.83008 * 180.02562 * 22 21 19 24 24 C 1.46497 * 119.99801 * 354.54974 * 23 22 21 25 25 H 1.09001 * 109.46933 * 300.00716 * 1 2 3 26 26 H 1.09001 * 109.46378 * 59.99710 * 1 2 3 27 27 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46677 * 239.99744 * 2 1 3 29 29 H 1.09001 * 109.46378 * 120.00290 * 2 1 3 30 30 H 0.96996 * 119.99428 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00440 * 265.00144 * 13 3 2 32 32 H 1.07996 * 120.82188 * 0.02562 * 17 16 14 33 33 H 1.07995 * 120.24454 * 180.23942 * 18 17 16 34 34 H 1.08997 * 109.47178 * 269.72783 * 20 19 18 35 35 H 1.09005 * 109.47243 * 29.72605 * 20 19 18 36 36 H 1.09002 * 109.47387 * 149.72471 * 20 19 18 37 37 H 0.97001 * 120.00069 * 174.54200 * 23 22 21 38 38 H 1.08998 * 109.47467 * 59.99504 * 24 23 22 39 39 H 1.09001 * 109.47096 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.47291 * 299.99533 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4062 0.3366 2.1730 9 14 6.0051 0.8798 1.3813 10 1 6.5990 1.5448 0.1938 11 1 6.4000 1.6154 2.6093 12 1 6.4962 -0.5192 1.4628 13 7 1.6527 2.0974 -1.2518 14 6 0.4354 2.6644 -1.3670 15 8 -0.3411 2.6327 -0.4317 16 6 0.0452 3.3231 -2.6269 17 6 0.8788 3.2641 -3.7498 18 6 0.4645 3.8939 -4.9098 19 6 -0.7448 4.5662 -4.9256 20 6 -1.1915 5.2553 -6.1892 21 7 -1.5161 4.6105 -3.8572 22 6 -1.1705 4.0213 -2.7226 23 7 -2.0105 4.0929 -1.6268 24 6 -3.2204 4.9169 -1.6839 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0618 2.9496 31 1 2.2721 2.1231 -1.9978 32 1 1.8201 2.7359 -3.7130 33 1 1.0820 3.8642 -5.7952 34 1 -0.8289 6.2832 -6.1901 35 1 -0.7882 4.7271 -7.0532 36 1 -2.2804 5.2541 -6.2383 37 1 -1.7989 3.5973 -0.8202 38 1 -3.8652 4.5606 -2.4872 39 1 -3.7517 4.8486 -0.7346 40 1 -2.9448 5.9545 -1.8725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907387300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:55 Heat of formation + Delta-G solvation = -23.090599 kcal Electronic energy + Delta-G solvation = -21770.237679 eV Core-core repulsion = 18583.910805 eV Total energy + Delta-G solvation = -3186.326874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72786 -40.07768 -37.33043 -36.47124 -34.60935 -33.83803 -32.47081 -32.13718 -29.34223 -28.69549 -26.77295 -25.02781 -23.87355 -23.22097 -22.19687 -21.17932 -19.34398 -18.09798 -17.95919 -17.60850 -17.01849 -16.41452 -16.33097 -15.67569 -15.52376 -15.22845 -14.93252 -14.58534 -14.51847 -14.07617 -13.74543 -13.46562 -13.38130 -13.17840 -13.08675 -13.03269 -12.87566 -12.82658 -12.70210 -12.15876 -12.06699 -11.59388 -11.17850 -11.06837 -10.92212 -10.59289 -10.54513 -10.32021 -9.69869 -8.62642 -8.16389 -6.33449 -0.12787 0.53787 1.44135 1.45716 1.57093 2.02077 2.31415 2.40616 2.64813 2.98594 3.13651 3.49424 3.81327 3.99146 4.10050 4.40492 4.47295 4.48919 4.55611 4.56459 4.66327 4.75866 4.80235 4.88520 4.89883 5.05226 5.06632 5.20225 5.24995 5.27057 5.42979 5.53259 5.59756 5.67000 5.78497 5.90295 6.15152 6.29921 6.47136 6.74110 6.93189 7.20321 7.34763 7.56217 8.89103 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023317 B = 0.004639 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.546363 B = 6034.715870 C = 6741.874061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.696 5.696 14 C 0.559 3.441 15 O -0.586 6.586 16 C -0.293 4.293 17 C 0.003 3.997 18 C -0.241 4.241 19 C 0.191 3.809 20 C -0.101 4.101 21 N -0.565 5.565 22 C 0.436 3.564 23 N -0.720 5.720 24 C 0.097 3.903 25 H 0.029 0.971 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.153 0.847 33 H 0.172 0.828 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.420 0.580 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 7.474 -16.001 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.344 5.344 14 C 0.349 3.651 15 O -0.470 6.470 16 C -0.304 4.304 17 C -0.023 4.023 18 C -0.263 4.263 19 C 0.050 3.950 20 C -0.158 4.158 21 N -0.285 5.285 22 C 0.196 3.804 23 N -0.362 5.362 24 C -0.047 4.047 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.171 0.829 33 H 0.189 0.811 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.166 7.861 -15.094 18.876 hybrid contribution 1.868 -0.796 0.874 2.211 sum -6.298 7.065 -14.220 17.082 Atomic orbital electron populations 1.21670 0.97011 0.99076 1.00242 1.21784 0.93732 0.99090 1.01321 1.18416 0.93741 0.89167 0.81073 0.97990 1.21595 0.91360 1.38952 1.06747 0.91103 1.25740 1.03216 0.94338 0.94993 1.70048 1.36951 1.38310 1.09870 0.85337 0.79233 0.77823 0.78183 1.18462 1.21105 1.20421 1.46072 1.14914 1.55653 1.17733 1.18250 0.82067 0.77815 0.86967 1.90327 1.51887 1.62757 1.42034 1.20234 0.99611 1.13615 0.96891 1.21824 0.97307 0.92379 0.90755 1.21900 0.99546 1.04753 1.00142 1.21921 0.89446 0.90218 0.93423 1.20885 1.02879 1.00905 0.91142 1.67214 1.36084 1.26117 0.99120 1.18491 0.86527 0.87861 0.87495 1.45591 1.24340 1.51279 1.14948 1.21581 0.85941 0.94458 1.02722 0.95135 0.94121 0.93735 0.94171 0.90825 0.92605 0.76304 0.82931 0.81092 0.88747 0.87744 0.90642 0.73170 0.92383 0.89457 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.25 2.24 44.24 0.10 14.35 16 4 H 0.00 0.13 7.58 -2.38 -0.02 0.12 16 5 C -0.55 -28.79 8.73 25.60 0.22 -28.56 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.93 5.29 84.66 0.45 1.37 16 8 N -0.91 -51.76 11.29 21.45 0.24 -51.51 16 9 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.70 -29.21 4.97 -449.38 -2.24 -31.45 16 14 C 0.56 23.16 6.32 86.66 0.55 23.70 16 15 O -0.59 -27.22 10.81 -4.04 -0.04 -27.26 16 16 C -0.29 -10.09 5.91 -19.88 -0.12 -10.20 16 17 C 0.00 0.09 9.63 22.72 0.22 0.30 16 18 C -0.24 -5.07 9.70 22.33 0.22 -4.86 16 19 C 0.19 4.35 6.78 42.59 0.29 4.64 16 20 C -0.10 -1.36 10.16 71.23 0.72 -0.63 16 21 N -0.57 -16.61 9.46 -180.61 -1.71 -18.31 16 22 C 0.44 14.78 7.48 133.65 1.00 15.78 16 23 N -0.72 -24.00 5.73 -365.93 -2.10 -26.10 16 24 C 0.10 2.42 10.72 127.77 1.37 3.79 16 25 H 0.03 1.46 7.84 -2.39 -0.02 1.44 16 26 H 0.04 1.80 5.64 -2.39 -0.01 1.78 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.40 14.36 6.67 -92.71 -0.62 13.74 16 32 H 0.15 3.38 6.55 -2.91 -0.02 3.36 16 33 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 0.85 8.07 -2.38 -0.02 0.83 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.42 15.70 5.33 -94.26 -0.50 15.20 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -66.67 324.78 1.93 -64.74 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.06 Total: 37.13 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.80 Total: 9.02 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -5.80 Total: -127.37 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.04 Total: -27.26 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -66.67 1.93 -64.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907387300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.651 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds