Wall clock time and date at job start Mon Mar 30 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 H 1.08992 * 109.47214 * 55.00320 * 3 2 1 5 5 C 1.50696 * 109.46938 * 175.00461 * 3 2 1 6 6 H 1.08000 * 120.00081 * 119.99929 * 5 3 2 7 7 C 1.37884 * 119.99945 * 299.99970 * 5 3 2 8 8 N 1.31512 * 119.99742 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00127 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47002 * 89.99421 * 9 7 5 11 11 H 1.48490 * 109.46966 * 210.00061 * 9 7 5 12 12 H 1.48507 * 109.46825 * 329.99847 * 9 7 5 13 13 N 1.46495 * 109.47057 * 295.00192 * 3 2 1 14 14 C 1.34780 * 120.00389 * 84.99887 * 13 3 2 15 15 O 1.21571 * 119.99187 * 0.02562 * 14 13 3 16 16 C 1.47711 * 120.00606 * 179.97438 * 14 13 3 17 17 N 1.32890 * 119.80322 * 0.02562 * 16 14 13 18 18 C 1.31337 * 121.71755 * 180.02562 * 17 16 14 19 19 C 1.38834 * 121.12012 * 359.97438 * 18 17 16 20 20 C 1.38203 * 119.47656 * 0.02562 * 19 18 17 21 21 C 1.39585 * 118.42395 * 0.25627 * 20 19 18 22 22 N 1.38849 * 120.56786 * 179.74232 * 21 20 19 23 23 C 1.46895 * 111.00141 * 300.00293 * 22 21 20 24 24 C 1.46903 * 110.99635 * 63.95130 * 22 21 20 25 25 H 1.09001 * 109.47497 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47131 * 299.99935 * 1 2 3 27 27 H 1.08995 * 109.47335 * 59.99647 * 1 2 3 28 28 H 1.08998 * 109.46705 * 240.00296 * 2 1 3 29 29 H 1.08995 * 109.47335 * 120.00353 * 2 1 3 30 30 H 0.97001 * 119.99671 * 180.02562 * 8 7 5 31 31 H 0.97000 * 120.00245 * 264.99792 * 13 3 2 32 32 H 1.08006 * 119.44178 * 179.97438 * 18 17 16 33 33 H 1.07997 * 120.25938 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.78524 * 179.97438 * 20 19 18 35 35 H 1.09005 * 109.47243 * 59.99512 * 23 22 21 36 36 H 1.08995 * 109.47455 * 179.97438 * 23 22 21 37 37 H 1.08994 * 109.47367 * 299.99818 * 23 22 21 38 38 H 1.09004 * 109.47022 * 60.00541 * 24 22 21 39 39 H 1.09002 * 109.46845 * 179.97438 * 24 22 21 40 40 H 1.09001 * 109.47499 * 300.00257 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1471 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3374 2.1732 9 14 6.0050 0.8810 1.3816 10 1 6.4418 2.1140 2.0846 11 1 6.4396 -0.3100 2.1546 12 1 6.6135 0.8414 0.0275 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3411 2.6326 -0.4318 16 6 0.0444 3.3253 -2.6289 17 7 0.8961 3.3582 -3.6484 18 6 0.5882 3.9360 -4.7870 19 6 -0.6479 4.5397 -4.9740 20 6 -1.5705 4.5335 -3.9450 21 6 -1.2196 3.9190 -2.7418 22 7 -2.1102 3.8915 -1.6769 23 6 -2.4656 5.2522 -1.2527 24 6 -3.3106 3.1149 -2.0146 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 1.3089 3.9415 -5.5915 33 1 -0.8864 5.0111 -5.9160 34 1 -2.5382 4.9972 -4.0674 35 1 -2.9309 5.7821 -2.0839 36 1 -3.1645 5.2016 -0.4178 37 1 -1.5656 5.7827 -0.9419 38 1 -3.0248 2.0915 -2.2576 39 1 -3.9910 3.1092 -1.1630 40 1 -3.8065 3.5674 -2.8734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907388151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:18 Heat of formation + Delta-G solvation = -1.804137 kcal Electronic energy + Delta-G solvation = -22121.287305 eV Core-core repulsion = 18935.883481 eV Total energy + Delta-G solvation = -3185.403824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78542 -39.91579 -38.24154 -36.75714 -34.24091 -33.40220 -32.44405 -31.37377 -28.93387 -28.53075 -26.07129 -25.67101 -24.68981 -22.56251 -22.10045 -21.03387 -19.47282 -17.97438 -17.92354 -17.35498 -16.95011 -16.46670 -16.12193 -15.83113 -15.71571 -14.99199 -14.81265 -14.54888 -14.53947 -14.29742 -13.63095 -13.51432 -13.37493 -13.22429 -13.15412 -12.89141 -12.85101 -12.68900 -12.67001 -12.14125 -12.02911 -11.56533 -11.04757 -10.87665 -10.83001 -10.57212 -10.47658 -9.94453 -9.47002 -9.15523 -8.13764 -6.30663 -0.27207 0.19188 1.44778 1.45587 1.56656 2.05645 2.37816 2.63700 2.83968 2.96247 3.15136 3.43280 3.88289 3.90999 4.06596 4.18458 4.33203 4.44818 4.51513 4.54831 4.57628 4.59476 4.60594 4.79255 4.92947 4.94268 5.03532 5.08425 5.12983 5.28647 5.47549 5.50299 5.58931 5.68475 5.83538 5.99268 6.00713 6.20105 6.31859 6.76806 6.81768 7.16925 7.36182 7.68608 8.91730 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.005062 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.653619 B = 5529.982015 C = 6166.500488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.281 3.719 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.064 0.936 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.544 3.456 15 O -0.535 6.535 16 C 0.066 3.934 17 N -0.478 5.478 18 C 0.086 3.914 19 C -0.124 4.124 20 C -0.116 4.116 21 C 0.089 3.911 22 N -0.520 5.520 23 C 0.038 3.962 24 C 0.041 3.959 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.401 0.599 32 H 0.195 0.805 33 H 0.185 0.815 34 H 0.166 0.834 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 9.249 -16.196 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.329 3.671 15 O -0.411 6.411 16 C -0.071 4.071 17 N -0.190 5.190 18 C -0.075 4.075 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.010 4.010 22 N -0.241 5.241 23 C -0.108 4.108 24 C -0.105 4.105 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.211 0.789 33 H 0.202 0.798 34 H 0.184 0.816 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.815 8.470 -14.735 20.145 hybrid contribution 0.127 0.523 -0.350 0.642 sum -10.687 8.992 -15.085 20.558 Atomic orbital electron populations 1.21620 0.96763 0.98927 1.00193 1.21765 0.93918 0.99087 1.00985 1.18363 0.93580 0.89146 0.81163 0.98243 1.21559 0.91533 1.38950 1.06645 0.91738 1.25752 1.03361 0.94279 0.94899 1.70047 1.37007 1.38378 1.09783 0.85373 0.79083 0.77546 0.78500 1.20338 1.20595 1.18735 1.46220 1.15435 1.55594 1.17452 1.18202 0.82397 0.79403 0.87099 1.90774 1.51576 1.59261 1.39536 1.21354 0.91964 1.00173 0.93632 1.67621 1.34054 1.16362 1.00937 1.23533 0.97045 0.92843 0.94086 1.22704 0.93124 0.97689 1.00869 1.22484 1.01845 0.97971 0.92104 1.19779 0.92910 0.96623 0.91642 1.58996 1.14518 1.16325 1.34252 1.22389 1.00864 0.86621 1.00952 1.22361 0.89901 0.97153 1.01119 0.93696 0.95190 0.94289 0.94691 0.90783 0.92555 0.76489 0.78863 0.79815 0.81642 0.92771 0.90022 0.93312 0.93337 0.90052 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16 2 C -0.12 -6.25 5.45 30.59 0.17 -6.08 16 3 C 0.28 15.52 2.24 44.25 0.10 15.62 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -31.05 8.73 25.60 0.22 -30.83 16 6 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -53.94 11.29 21.45 0.24 -53.69 16 9 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.70 -33.39 5.01 -449.12 -2.25 -35.64 16 14 C 0.54 24.81 6.36 86.75 0.55 25.36 16 15 O -0.53 -26.98 12.14 -3.94 -0.05 -27.03 16 16 C 0.07 2.38 6.76 41.94 0.28 2.67 16 17 N -0.48 -14.99 9.53 -184.51 -1.76 -16.75 16 18 C 0.09 1.75 11.17 84.91 0.95 2.70 16 19 C -0.12 -1.85 10.10 22.40 0.23 -1.62 16 20 C -0.12 -2.20 8.68 22.59 0.20 -2.00 16 21 C 0.09 2.59 4.72 38.81 0.18 2.78 16 22 N -0.52 -15.51 2.91 -744.02 -2.17 -17.68 16 23 C 0.04 0.89 9.34 127.69 1.19 2.08 16 24 C 0.04 0.96 9.38 127.69 1.20 2.16 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.52 7.84 -2.39 -0.02 1.50 16 27 H 0.04 1.85 5.64 -2.39 -0.01 1.83 16 28 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 4.27 5.95 -2.39 -0.01 4.26 16 30 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.40 17.92 7.86 -92.71 -0.73 17.19 16 32 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.17 2.02 7.16 -2.91 -0.02 2.00 16 35 H 0.05 0.90 7.17 -2.38 -0.02 0.88 16 36 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 40 H 0.05 0.90 7.39 -2.39 -0.02 0.88 16 Total: -1.00 -73.23 326.08 2.69 -70.54 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.32 Total: 25.15 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.33 Total: 9.21 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -5.93 Total: -123.76 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.03 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -73.23 2.69 -70.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907388151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.737 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds