Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46765 * 2 1 4 4 H 1.09000 * 109.47012 * 304.99700 * 3 2 1 5 5 C 1.50706 * 109.46728 * 185.00118 * 3 2 1 6 6 H 1.07999 * 120.00111 * 239.99331 * 5 3 2 7 7 C 1.37875 * 120.00187 * 60.00102 * 5 3 2 8 8 N 1.31519 * 119.99825 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00147 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46883 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47309 * 119.99513 * 9 7 5 12 12 H 1.48493 * 109.47237 * 239.99635 * 9 7 5 13 13 N 1.46496 * 109.47517 * 65.00260 * 3 2 1 14 14 C 1.34774 * 119.99812 * 274.99992 * 13 3 2 15 15 O 1.21634 * 119.99874 * 354.70150 * 14 13 3 16 16 C 1.47160 * 119.99936 * 174.70568 * 14 13 3 17 17 C 1.38093 * 126.94371 * 4.69093 * 16 14 13 18 18 C 1.39526 * 105.71057 * 179.87202 * 17 16 14 19 19 N 1.31068 * 107.60104 * 0.38486 * 18 17 16 20 20 N 1.28450 * 110.96539 * 359.76200 * 19 18 17 21 21 C 1.46499 * 125.19801 * 180.02562 * 20 19 18 22 22 C 1.51271 * 109.37482 * 180.20433 * 18 17 16 23 23 C 1.54372 * 105.27650 * 17.40672 * 22 18 17 24 24 C 1.50854 * 144.40111 * 0.96487 * 17 16 14 25 25 H 1.09005 * 109.47041 * 300.00060 * 1 2 3 26 26 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47420 * 59.99923 * 1 2 3 28 28 H 1.09002 * 109.47484 * 119.99620 * 2 1 3 29 29 H 1.08995 * 109.47046 * 239.99942 * 2 1 3 30 30 H 0.97000 * 119.99638 * 180.02562 * 8 7 5 31 31 H 0.97005 * 120.00289 * 94.99642 * 13 3 2 32 32 H 1.09004 * 109.47286 * 274.83681 * 21 20 19 33 33 H 1.08999 * 109.46896 * 34.83747 * 21 20 19 34 34 H 1.09004 * 109.46792 * 154.83937 * 21 20 19 35 35 H 1.09003 * 110.28733 * 136.36282 * 22 18 17 36 36 H 1.09002 * 110.28538 * 258.45589 * 22 18 17 37 37 H 1.08994 * 110.78273 * 91.96264 * 23 22 18 38 38 H 1.09001 * 110.78444 * 215.21636 * 23 22 18 39 39 H 1.08998 * 110.46336 * 43.20465 * 24 17 16 40 40 H 1.08995 * 110.16606 * 281.12967 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5986 1.5474 -0.1948 11 1 6.4971 -0.5174 -1.4629 12 1 6.3989 1.6167 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3047 2.7175 0.4029 16 6 0.0010 3.2192 2.6590 17 6 0.7512 3.3173 3.8142 18 6 -0.0870 3.9086 4.7600 19 7 -1.2439 4.1257 4.1835 20 7 -1.2279 3.7361 2.9597 21 6 -2.3546 3.8319 2.0282 22 6 0.6596 4.0611 6.0667 23 6 2.1526 3.9171 5.7014 24 6 2.1050 3.0506 4.4240 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.8293 -0.0618 -2.9495 31 1 2.2719 2.1232 1.9978 32 1 -3.0022 2.9637 2.1506 33 1 -2.9210 4.7398 2.2354 34 1 -1.9787 3.8635 1.0055 35 1 0.4693 5.0437 6.4983 36 1 0.3641 3.2775 6.7645 37 1 2.5951 4.8909 5.4918 38 1 2.6982 3.4092 6.4966 39 1 2.8975 3.3464 3.7366 40 1 2.2009 1.9952 4.6791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = 37.166606 kcal Electronic energy + Delta-G solvation = -22145.534836 eV Core-core repulsion = 18961.820910 eV Total energy + Delta-G solvation = -3183.713926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.50230 -38.81075 -36.93142 -35.11095 -32.56322 -31.93491 -31.35643 -30.07586 -27.52455 -26.94881 -26.27941 -23.50896 -22.42101 -21.27299 -20.19058 -19.46773 -19.28695 -17.35238 -16.35961 -16.00526 -15.68232 -15.21399 -14.99234 -14.41103 -14.33310 -13.81388 -13.53483 -12.86902 -12.75350 -12.72378 -12.66189 -12.25554 -12.08453 -11.78807 -11.57327 -11.31363 -11.17129 -11.00716 -10.99069 -10.88353 -10.34729 -10.30101 -10.18813 -9.71309 -9.26558 -9.08556 -8.82853 -8.55461 -8.40602 -7.90966 -6.16417 -4.25729 1.61179 2.56879 2.68130 3.21878 3.30103 3.32593 3.80090 3.90688 4.05473 4.34236 4.81932 4.94501 5.00661 5.15357 5.19307 5.25665 5.32353 5.34580 5.63500 5.70747 5.74383 5.80932 5.96935 5.98356 6.16714 6.19165 6.31870 6.37194 6.57390 6.64968 6.96283 7.00571 7.11273 7.27735 7.34120 7.55971 7.66556 7.83687 8.11630 8.24468 8.56790 8.71146 8.99125 9.41363 10.89126 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.005536 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.300101 B = 5056.227543 C = 6116.436927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.687 5.687 14 C 0.577 3.423 15 O -0.552 6.552 16 C -0.005 4.005 17 C -0.191 4.191 18 C -0.006 4.006 19 N -0.271 5.271 20 N -0.262 5.262 21 C 0.087 3.913 22 C -0.023 4.023 23 C -0.114 4.114 24 C -0.049 4.049 25 H 0.033 0.967 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.102 0.898 30 H 0.264 0.736 31 H 0.392 0.608 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 4.874 13.063 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.335 5.335 14 C 0.361 3.639 15 O -0.433 6.433 16 C -0.133 4.133 17 C -0.202 4.202 18 C -0.164 4.164 19 N -0.103 5.103 20 N -0.049 5.049 21 C -0.053 4.053 22 C -0.062 4.062 23 C -0.152 4.152 24 C -0.087 4.087 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.225 0.775 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.172 5.217 12.227 14.656 hybrid contribution 1.772 -0.371 -0.014 1.810 sum -4.401 4.846 12.212 13.856 Atomic orbital electron populations 1.21824 0.98542 0.98335 1.00878 1.21950 0.92489 0.99679 1.02557 1.18899 0.94544 0.89120 0.80568 0.92871 1.21237 0.90468 1.39098 1.06407 0.91924 1.24874 0.98691 0.94719 0.95305 1.69899 1.35098 1.37572 1.09363 0.86389 0.84732 0.77805 0.78177 1.19667 1.20836 1.20871 1.46297 1.13570 1.54615 1.18977 1.16903 0.83327 0.78714 0.84996 1.90710 1.54231 1.59467 1.38854 1.20857 0.87949 1.08059 0.96413 1.21317 0.99194 1.06603 0.93044 1.22677 0.90789 1.04139 0.98779 1.72631 1.23326 1.20871 0.93515 1.45599 1.10089 1.41892 1.07332 1.22377 0.86263 1.03510 0.93171 1.20364 0.92503 1.02567 0.90769 1.22367 0.95139 1.00543 0.97175 1.20434 0.91830 1.00578 0.95863 0.94758 0.95530 0.93028 0.94838 0.87972 0.92561 0.77470 0.90174 0.89432 0.86223 0.90611 0.90000 0.90704 0.89902 0.90291 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.58 37.16 0.32 -2.70 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.66 2.25 -69.08 -0.16 6.51 16 4 H 0.05 1.51 7.51 -51.93 -0.39 1.12 16 5 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.13 11.29 55.43 0.63 -23.51 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.69 -14.47 5.01 -56.09 -0.28 -14.76 16 14 C 0.58 11.91 6.16 -12.64 -0.08 11.83 16 15 O -0.55 -12.45 12.16 5.25 0.06 -12.39 16 16 C 0.00 -0.09 6.95 -82.14 -0.57 -0.66 16 17 C -0.19 -3.03 6.56 -104.12 -0.68 -3.71 16 18 C -0.01 -0.09 8.13 -82.16 -0.67 -0.76 16 19 N -0.27 -4.52 11.91 33.78 0.40 -4.12 16 20 N -0.26 -4.43 3.75 -63.95 -0.24 -4.67 16 21 C 0.09 1.18 11.02 59.85 0.66 1.83 16 22 C -0.02 -0.24 6.76 -26.88 -0.18 -0.42 16 23 C -0.11 -1.07 7.07 -25.26 -0.18 -1.24 16 24 C -0.05 -0.60 5.86 -27.06 -0.16 -0.76 16 25 H 0.03 0.73 5.76 -51.93 -0.30 0.43 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.18 7.92 -51.93 -0.41 0.77 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 7.41 6.72 -40.82 -0.27 7.13 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.12 1.79 5.97 -51.93 -0.31 1.48 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -30.35 320.68 -7.60 -37.95 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.74 Total: 7.16 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.24 Total: -5.68 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.51 Total: -47.05 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.06 Total: -12.39 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.35 -7.60 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.115 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds