Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46753 * 55.00002 * 3 2 1 5 5 C 1.50698 * 109.47055 * 174.99910 * 3 2 1 6 6 H 1.08005 * 119.99944 * 119.99813 * 5 3 2 7 7 C 1.37875 * 120.00091 * 300.00050 * 5 3 2 8 8 N 1.31518 * 120.00259 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99901 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46951 * 59.99831 * 9 7 5 11 11 H 1.48499 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47159 * 299.99880 * 9 7 5 13 13 N 1.46497 * 109.46534 * 294.99801 * 3 2 1 14 14 C 1.34782 * 119.99843 * 85.00783 * 13 3 2 15 15 O 1.21625 * 120.00104 * 355.67831 * 14 13 3 16 16 C 1.47158 * 120.00023 * 175.68754 * 14 13 3 17 17 C 1.38094 * 126.94069 * 4.97651 * 16 14 13 18 18 C 1.39532 * 105.71019 * 179.97438 * 17 16 14 19 19 N 1.31063 * 107.59814 * 0.02562 * 18 17 16 20 20 N 1.28450 * 110.96707 * 359.72586 * 19 18 17 21 21 C 1.46501 * 125.20048 * 180.30494 * 20 19 18 22 22 C 1.51271 * 109.37653 * 180.02562 * 18 17 16 23 23 C 1.54378 * 105.27557 * 342.87171 * 22 18 17 24 24 C 1.50854 * 144.41143 * 359.94321 * 17 16 14 25 25 H 1.09001 * 109.47061 * 300.00254 * 1 2 3 26 26 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47051 * 59.99886 * 1 2 3 28 28 H 1.09006 * 109.47122 * 119.99650 * 2 1 3 29 29 H 1.09001 * 109.47061 * 239.99746 * 2 1 3 30 30 H 0.96994 * 119.99806 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00050 * 264.99353 * 13 3 2 32 32 H 1.09002 * 109.47019 * 274.97932 * 21 20 19 33 33 H 1.09005 * 109.46796 * 34.97724 * 21 20 19 34 34 H 1.08994 * 109.47402 * 154.97680 * 21 20 19 35 35 H 1.08999 * 110.28314 * 223.91898 * 22 18 17 36 36 H 1.09004 * 110.28590 * 101.82263 * 22 18 17 37 37 H 1.09005 * 110.77769 * 268.03553 * 23 22 18 38 38 H 1.09000 * 110.94369 * 144.67139 * 23 22 18 39 39 H 1.08997 * 110.30255 * 316.01485 * 24 17 16 40 40 H 1.09005 * 110.30247 * 78.16809 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0049 0.8812 1.3818 10 1 6.4994 2.2814 1.3821 11 1 6.3978 0.2177 2.6509 12 1 6.5975 0.1472 0.2349 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3703 2.5646 -0.4612 16 6 0.0806 3.4041 -2.5887 17 6 0.8405 3.5256 -3.7353 18 6 0.0875 4.3143 -4.6059 19 7 -1.0300 4.6231 -3.9945 20 7 -1.0696 4.1051 -2.8198 21 6 -2.1772 4.2465 -1.8714 22 6 0.8487 4.5010 -5.8997 23 6 2.3085 4.1209 -5.5712 24 6 2.1439 3.1402 -4.3898 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9977 32 1 -2.0585 5.1730 -1.3096 33 1 -3.1211 4.2702 -2.4162 34 1 -2.1762 3.4014 -1.1830 35 1 0.7927 5.5399 -6.2245 36 1 0.4508 3.8413 -6.6708 37 1 2.8779 4.9995 -5.2678 38 1 2.7832 3.6282 -6.4197 39 1 2.9685 3.2537 -3.6861 40 1 2.0952 2.1141 -4.7543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907389961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = 38.793163 kcal Electronic energy + Delta-G solvation = -22139.434663 eV Core-core repulsion = 18955.791270 eV Total energy + Delta-G solvation = -3183.643393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50061 -38.83362 -36.93166 -35.08224 -32.56876 -31.93827 -31.36652 -30.03909 -27.50880 -26.93522 -26.27787 -23.47936 -22.43718 -21.28111 -20.17774 -19.43916 -19.29655 -17.34361 -16.37205 -16.00838 -15.64944 -15.20844 -14.99464 -14.44817 -14.33649 -13.81912 -13.57370 -12.88380 -12.73845 -12.70930 -12.64287 -12.23832 -11.96435 -11.78463 -11.57242 -11.28115 -11.16614 -11.03243 -10.99425 -10.85261 -10.37791 -10.28980 -10.16530 -9.65577 -9.23517 -9.10295 -8.81179 -8.53607 -8.40395 -7.90057 -6.15981 -4.25741 1.61430 2.57085 2.68363 3.23950 3.29460 3.30466 3.79063 3.92228 4.05469 4.34121 4.82272 4.94804 5.00464 5.15484 5.19359 5.26941 5.32214 5.34420 5.63664 5.70740 5.74314 5.81110 5.96938 5.98699 6.16908 6.19451 6.37015 6.44520 6.63195 6.65387 6.99035 7.03109 7.14836 7.29768 7.36670 7.57158 7.67567 7.84278 8.12767 8.24701 8.56929 8.70338 8.99102 9.41296 10.89369 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.005566 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.910751 B = 5029.055576 C = 6083.407095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.574 3.426 15 O -0.549 6.549 16 C -0.004 4.004 17 C -0.191 4.191 18 C -0.006 4.006 19 N -0.272 5.272 20 N -0.262 5.262 21 C 0.087 3.913 22 C -0.023 4.023 23 C -0.114 4.114 24 C -0.049 4.049 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.392 0.608 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 5.509 -12.815 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.334 5.334 14 C 0.358 3.642 15 O -0.430 6.430 16 C -0.132 4.132 17 C -0.202 4.202 18 C -0.164 4.164 19 N -0.104 5.104 20 N -0.049 5.049 21 C -0.053 4.053 22 C -0.062 4.062 23 C -0.152 4.152 24 C -0.087 4.087 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.225 0.775 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.882 5.930 -11.935 14.568 hybrid contribution 1.781 -0.377 -0.001 1.820 sum -4.101 5.554 -11.936 13.789 Atomic orbital electron populations 1.21868 0.98268 0.97997 1.01322 1.21946 0.92708 0.99581 1.02423 1.18882 0.94401 0.89298 0.80294 0.93156 1.21166 0.90472 1.39343 1.06455 0.92033 1.24867 0.98671 0.94686 0.95295 1.69879 1.35285 1.37402 1.09321 0.86502 0.84724 0.78360 0.77507 1.20156 1.21109 1.20072 1.46312 1.13646 1.54654 1.18790 1.16908 0.83589 0.79415 0.84273 1.90716 1.49289 1.62089 1.40881 1.20847 0.90236 1.04589 0.97547 1.21320 0.99951 1.04926 0.93998 1.22675 0.92442 1.02143 0.99119 1.72628 1.22476 1.20438 0.94820 1.45599 1.14069 1.34745 1.10508 1.22374 0.86070 1.05845 0.91012 1.20359 0.92610 1.02260 0.90956 1.22368 0.95463 0.99429 0.97982 1.20440 0.92540 0.99591 0.96122 0.93108 0.95917 0.94188 0.88133 0.94920 0.92441 0.77479 0.90163 0.89450 0.86234 0.90608 0.90009 0.90675 0.89913 0.90269 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.47 37.16 0.31 -2.71 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.43 7.64 -51.93 -0.40 1.03 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.15 11.30 55.43 0.63 -23.52 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.69 -14.43 5.01 -56.10 -0.28 -14.71 16 14 C 0.57 11.81 6.52 -12.64 -0.08 11.72 16 15 O -0.55 -12.25 11.40 5.26 0.06 -12.19 16 16 C 0.00 -0.08 6.95 -82.15 -0.57 -0.65 16 17 C -0.19 -3.03 6.56 -104.12 -0.68 -3.71 16 18 C -0.01 -0.09 8.13 -82.16 -0.67 -0.75 16 19 N -0.27 -4.52 11.91 33.78 0.40 -4.12 16 20 N -0.26 -4.42 3.75 -63.95 -0.24 -4.66 16 21 C 0.09 1.17 11.01 59.85 0.66 1.83 16 22 C -0.02 -0.24 6.76 -26.88 -0.18 -0.42 16 23 C -0.11 -1.07 7.07 -25.27 -0.18 -1.25 16 24 C -0.05 -0.60 5.96 -27.07 -0.16 -0.76 16 25 H 0.05 1.17 7.80 -51.93 -0.40 0.77 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.87 5.54 -51.93 -0.29 0.58 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 7.39 6.58 -40.82 -0.27 7.12 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.12 1.77 5.97 -51.93 -0.31 1.46 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -30.24 319.70 -7.60 -37.84 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.71 Total: 7.15 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.25 Total: -5.77 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.51 Total: -47.01 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.06 Total: -12.19 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.24 -7.60 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.635 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds