Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47299 * 2 1 4 4 H 1.09000 * 109.46753 * 55.00002 * 3 2 1 5 5 C 1.50698 * 109.47055 * 174.99910 * 3 2 1 6 6 H 1.08005 * 119.99944 * 119.99813 * 5 3 2 7 7 C 1.37875 * 120.00091 * 300.00050 * 5 3 2 8 8 N 1.31518 * 120.00259 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99901 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46951 * 59.99831 * 9 7 5 11 11 H 1.48499 * 109.47194 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47159 * 299.99880 * 9 7 5 13 13 N 1.46497 * 109.46534 * 294.99801 * 3 2 1 14 14 C 1.34782 * 119.99843 * 85.00783 * 13 3 2 15 15 O 1.21625 * 120.00104 * 355.67831 * 14 13 3 16 16 C 1.47158 * 120.00023 * 175.68754 * 14 13 3 17 17 C 1.38094 * 126.94069 * 4.97651 * 16 14 13 18 18 C 1.39532 * 105.71019 * 179.97438 * 17 16 14 19 19 N 1.31063 * 107.59814 * 0.02562 * 18 17 16 20 20 N 1.28450 * 110.96707 * 359.72586 * 19 18 17 21 21 C 1.46501 * 125.20048 * 180.30494 * 20 19 18 22 22 C 1.51271 * 109.37653 * 180.02562 * 18 17 16 23 23 C 1.54378 * 105.27557 * 342.87171 * 22 18 17 24 24 C 1.50854 * 144.41143 * 359.94321 * 17 16 14 25 25 H 1.09001 * 109.47061 * 300.00254 * 1 2 3 26 26 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47051 * 59.99886 * 1 2 3 28 28 H 1.09006 * 109.47122 * 119.99650 * 2 1 3 29 29 H 1.09001 * 109.47061 * 239.99746 * 2 1 3 30 30 H 0.96994 * 119.99806 * 179.97438 * 8 7 5 31 31 H 0.96994 * 120.00050 * 264.99353 * 13 3 2 32 32 H 1.09002 * 109.47019 * 274.97932 * 21 20 19 33 33 H 1.09005 * 109.46796 * 34.97724 * 21 20 19 34 34 H 1.08994 * 109.47402 * 154.97680 * 21 20 19 35 35 H 1.08999 * 110.28314 * 223.91898 * 22 18 17 36 36 H 1.09004 * 110.28590 * 101.82263 * 22 18 17 37 37 H 1.09005 * 110.77769 * 268.03553 * 23 22 18 38 38 H 1.09000 * 110.94369 * 144.67139 * 23 22 18 39 39 H 1.08997 * 110.30255 * 316.01485 * 24 17 16 40 40 H 1.09005 * 110.30247 * 78.16809 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0049 0.8812 1.3818 10 1 6.4994 2.2814 1.3821 11 1 6.3978 0.2177 2.6509 12 1 6.5975 0.1472 0.2349 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3703 2.5646 -0.4612 16 6 0.0806 3.4041 -2.5887 17 6 0.8405 3.5256 -3.7353 18 6 0.0875 4.3143 -4.6059 19 7 -1.0300 4.6231 -3.9945 20 7 -1.0696 4.1051 -2.8198 21 6 -2.1772 4.2465 -1.8714 22 6 0.8487 4.5010 -5.8997 23 6 2.3085 4.1209 -5.5712 24 6 2.1439 3.1402 -4.3898 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9977 32 1 -2.0585 5.1730 -1.3096 33 1 -3.1211 4.2702 -2.4162 34 1 -2.1762 3.4014 -1.1830 35 1 0.7927 5.5399 -6.2245 36 1 0.4508 3.8413 -6.6708 37 1 2.8779 4.9995 -5.2678 38 1 2.7832 3.6282 -6.4197 39 1 2.9685 3.2537 -3.6861 40 1 2.0952 2.1141 -4.7543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907389961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = 19.925156 kcal Electronic energy + Delta-G solvation = -22140.252841 eV Core-core repulsion = 18955.791270 eV Total energy + Delta-G solvation = -3184.461571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.71864 -40.51812 -37.94876 -36.90115 -34.40420 -33.20805 -32.97874 -31.44885 -28.95696 -28.38053 -27.34513 -25.29642 -23.95750 -22.44247 -21.50353 -21.18347 -20.68128 -18.86788 -17.69701 -17.57291 -17.26045 -16.80571 -16.22547 -15.96807 -15.82392 -15.23418 -14.86518 -14.58313 -13.98219 -13.85994 -13.77231 -13.62273 -13.45804 -13.27831 -13.15493 -12.91693 -12.70011 -12.64928 -12.20851 -12.09818 -11.98310 -11.75662 -11.58603 -11.43133 -11.09023 -10.88426 -10.52658 -10.14253 -9.68261 -9.54033 -8.15959 -6.33429 0.24380 1.37086 1.47548 1.48727 1.52014 1.56528 2.23797 2.35950 2.55521 2.93511 3.13950 3.74618 3.90760 3.97107 4.21289 4.26259 4.28405 4.31049 4.48772 4.56533 4.60398 4.71047 4.77251 4.89070 4.89751 5.04163 5.05476 5.10872 5.24542 5.26523 5.41869 5.43954 5.49789 5.52895 5.58884 5.76572 5.82056 5.87827 6.14235 6.71335 6.80563 7.05790 7.27119 7.43117 8.89337 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.005566 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.910751 B = 5029.055576 C = 6083.407095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.282 3.718 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.685 5.685 14 C 0.574 3.426 15 O -0.575 6.575 16 C -0.041 4.041 17 C -0.189 4.189 18 C -0.013 4.013 19 N -0.283 5.283 20 N -0.270 5.270 21 C 0.083 3.917 22 C -0.022 4.022 23 C -0.103 4.103 24 C -0.056 4.056 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 5.936 -15.498 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.187 1.187 13 N -0.333 5.333 14 C 0.360 3.640 15 O -0.457 6.457 16 C -0.168 4.168 17 C -0.200 4.200 18 C -0.171 4.171 19 N -0.115 5.115 20 N -0.057 5.057 21 C -0.056 4.056 22 C -0.061 4.061 23 C -0.141 4.141 24 C -0.094 4.094 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.095 0.905 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.595 6.369 -14.649 16.621 hybrid contribution 1.312 -0.468 0.807 1.610 sum -3.283 5.901 -13.841 15.401 Atomic orbital electron populations 1.21701 0.96949 0.99054 1.00329 1.21801 0.93793 0.98917 1.01478 1.18492 0.93973 0.89266 0.80387 0.97864 1.21497 0.91075 1.39341 1.06922 0.91007 1.25726 1.03277 0.94210 0.94886 1.70029 1.37160 1.38109 1.09812 0.85437 0.79077 0.78451 0.77640 1.19738 1.21211 1.18738 1.46036 1.14315 1.54967 1.18010 1.17209 0.82929 0.78950 0.84892 1.90698 1.49934 1.62879 1.42140 1.20609 0.92065 1.06631 0.97499 1.21902 1.01220 1.03818 0.93064 1.23595 0.91683 1.01111 1.00728 1.72611 1.23451 1.20652 0.94786 1.45858 1.14211 1.34712 1.10946 1.22485 0.86643 1.05487 0.90972 1.20618 0.92471 1.03872 0.89097 1.22414 0.94967 0.99022 0.97667 1.20694 0.90456 1.01234 0.97023 0.95100 0.93706 0.94116 0.90577 0.94100 0.92507 0.76155 0.89187 0.86804 0.88012 0.88988 0.88063 0.90177 0.86653 0.90538 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.47 71.98 0.61 -4.92 16 2 C -0.12 -5.91 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.33 2.24 44.25 0.10 14.43 16 4 H 0.00 0.21 7.64 -2.39 -0.02 0.19 16 5 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.16 11.30 21.45 0.24 -50.92 16 9 Si 0.97 41.12 29.54 68.60 2.03 43.15 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 13 N -0.68 -29.29 5.01 -449.63 -2.25 -31.55 16 14 C 0.57 24.27 6.52 86.58 0.56 24.83 16 15 O -0.57 -26.81 11.40 -4.11 -0.05 -26.86 16 16 C -0.04 -1.49 6.95 40.70 0.28 -1.21 16 17 C -0.19 -5.73 6.56 -19.54 -0.13 -5.86 16 18 C -0.01 -0.37 8.13 43.17 0.35 -0.02 16 19 N -0.28 -9.08 11.91 -47.03 -0.56 -9.64 16 20 N -0.27 -9.05 3.75 -356.23 -1.34 -10.38 16 21 C 0.08 2.28 11.01 127.77 1.41 3.68 16 22 C -0.02 -0.38 6.76 30.50 0.21 -0.17 16 23 C -0.10 -1.51 7.07 31.54 0.22 -1.28 16 24 C -0.06 -1.22 5.96 30.38 0.18 -1.04 16 25 H 0.03 1.47 7.80 -2.39 -0.02 1.45 16 26 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.04 1.80 5.54 -2.39 -0.01 1.79 16 28 H 0.08 4.13 5.95 -2.38 -0.01 4.12 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.40 15.15 6.58 -92.71 -0.61 14.54 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.10 3.16 5.97 -2.39 -0.01 3.14 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.72 7.53 -2.39 -0.02 1.70 16 40 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -66.84 319.70 3.15 -63.68 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.45 Total: 26.77 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.63 Total: -4.25 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.91 Total: -102.49 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -66.84 3.15 -63.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.610 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds