Wall clock time and date at job start Mon Mar 30 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46597 * 2 1 4 4 N 1.46500 * 109.47170 * 120.00106 * 2 1 3 5 5 C 1.46498 * 119.99793 * 304.87744 * 4 2 1 6 6 C 1.50703 * 109.47472 * 270.00090 * 5 4 2 7 7 H 1.08005 * 119.99699 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00363 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47344 * 59.99633 * 10 8 6 12 12 H 1.48496 * 109.47420 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47093 * 299.99665 * 10 8 6 14 14 C 1.34773 * 120.00109 * 124.88444 * 4 2 1 15 15 O 1.21751 * 119.99641 * 354.77064 * 14 4 2 16 16 C 1.41744 * 120.00106 * 175.05334 * 14 4 2 17 17 C 1.35183 * 120.00231 * 184.69344 * 16 14 4 18 18 C 1.46774 * 120.00364 * 179.97438 * 17 16 14 19 19 C 1.36753 * 126.24688 * 179.71116 * 18 17 16 20 20 N 1.36055 * 106.71925 * 179.90458 * 19 18 17 21 21 C 1.46504 * 126.17362 * 180.13124 * 20 19 18 22 22 C 1.35850 * 107.64663 * 0.36393 * 20 19 18 23 23 N 1.30179 * 109.10623 * 359.76925 * 22 20 19 24 24 H 1.08999 * 109.46990 * 299.99313 * 1 2 3 25 25 H 1.08997 * 109.47070 * 60.00448 * 1 2 3 26 26 H 1.09004 * 109.46352 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47268 * 240.00254 * 2 1 3 28 28 H 1.09001 * 109.46898 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47284 * 300.00064 * 3 2 1 30 30 H 1.08996 * 109.47580 * 60.00392 * 3 2 1 31 31 H 1.08997 * 109.47612 * 30.00310 * 5 4 2 32 32 H 1.09001 * 109.47424 * 150.00774 * 5 4 2 33 33 H 0.97000 * 120.00090 * 180.02562 * 9 8 6 34 34 H 1.07998 * 120.00357 * 4.68805 * 16 14 4 35 35 H 1.08007 * 119.99701 * 0.02562 * 17 16 14 36 36 H 1.07999 * 126.63587 * 0.02562 * 19 18 17 37 37 H 1.08997 * 109.47352 * 270.24671 * 21 20 19 38 38 H 1.08998 * 109.47535 * 30.24936 * 21 20 19 39 39 H 1.09001 * 109.46560 * 150.24899 * 21 20 19 40 40 H 1.07997 * 125.44708 * 179.73350 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5786 -0.2555 2.5241 6 6 2.5267 0.7917 3.0492 7 1 3.3721 1.1023 2.4532 8 6 2.3148 1.3532 4.2905 9 7 1.2851 0.9753 5.0160 10 14 3.4896 2.6516 4.9410 11 1 3.5018 3.8151 4.0183 12 1 3.0439 3.0927 6.2871 13 1 4.8569 2.0798 5.0346 14 6 2.8724 -1.7262 1.0749 15 8 3.1637 -2.1489 -0.0290 16 6 3.4267 -2.3270 2.2329 17 6 4.3549 -3.3021 2.1101 18 6 4.9293 -3.9239 3.3092 19 6 5.8669 -4.9191 3.3337 20 7 6.1141 -5.1917 4.6435 21 6 7.0553 -6.1905 5.1562 22 6 5.3268 -4.3741 5.3901 23 7 4.6222 -3.6202 4.5966 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 0.5753 0.1648 2.4549 32 1 1.5690 -1.1093 3.2016 33 1 1.1359 1.3706 5.8892 34 1 3.1075 -2.0059 3.2134 35 1 4.6745 -3.6230 1.1296 36 1 6.3242 -5.3949 2.4788 37 1 6.5436 -7.1458 5.2730 38 1 7.8819 -6.3046 4.4549 39 1 7.4408 -5.8643 6.1222 40 1 5.2908 -4.3535 6.4692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931327811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:31 Heat of formation + Delta-G solvation = 22.984484 kcal Electronic energy + Delta-G solvation = -21377.079791 eV Core-core repulsion = 18192.750883 eV Total energy + Delta-G solvation = -3184.328908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.83573 -40.96446 -37.52094 -35.62681 -34.86137 -33.76874 -32.71991 -30.25382 -29.12927 -28.04069 -27.72225 -25.19494 -24.84313 -22.40032 -21.93336 -20.44769 -19.26350 -18.60453 -18.49922 -17.57011 -17.01203 -16.54273 -16.36136 -15.81145 -15.35862 -15.07030 -14.90048 -14.50399 -14.29411 -14.10225 -13.93250 -13.77013 -13.49497 -13.36853 -13.27023 -12.92824 -12.74589 -12.72832 -12.47180 -12.24403 -12.02478 -11.63442 -11.43689 -11.25517 -10.94177 -10.78423 -10.48567 -10.44277 -9.44381 -8.87433 -8.13725 -6.25560 0.00710 1.26148 1.40003 1.42455 1.49530 1.93481 2.15790 2.37407 2.52795 2.79014 3.16207 3.60259 3.83315 4.00609 4.08068 4.23957 4.29993 4.34104 4.44242 4.50494 4.54570 4.66583 4.72322 4.77640 4.83328 4.95367 5.01495 5.12026 5.18122 5.19930 5.34141 5.43919 5.52597 5.55579 5.74137 5.77349 6.00136 6.13924 6.28772 6.62559 6.88042 7.12556 7.36473 7.47795 8.92293 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.005713 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.015476 B = 4900.161849 C = 6447.962141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 C -0.145 4.145 4 N -0.592 5.592 5 C 0.256 3.744 6 C -0.528 4.528 7 H 0.050 0.950 8 C 0.020 3.980 9 N -0.922 5.922 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.546 3.454 15 O -0.606 6.606 16 C -0.221 4.221 17 C 0.025 3.975 18 C -0.043 4.043 19 C 0.010 3.990 20 N -0.460 5.460 21 C 0.066 3.934 22 C 0.181 3.819 23 N -0.526 5.526 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.014 0.986 33 H 0.266 0.734 34 H 0.115 0.885 35 H 0.149 0.851 36 H 0.220 0.780 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.095 -12.941 -0.691 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.203 4.203 4 N -0.321 5.321 5 C 0.135 3.865 6 C -0.567 4.567 7 H 0.068 0.932 8 C -0.180 4.180 9 N -0.562 5.562 10 Si 0.778 3.222 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.205 1.205 14 C 0.340 3.660 15 O -0.493 6.493 16 C -0.243 4.243 17 C 0.003 3.997 18 C -0.168 4.168 19 C -0.128 4.128 20 N -0.141 5.141 21 C -0.074 4.074 22 C -0.103 4.103 23 N -0.243 5.243 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.167 0.833 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 9.639 -12.592 -0.730 15.874 hybrid contribution 0.769 0.374 0.636 1.066 sum 10.408 -12.217 -0.094 16.050 Atomic orbital electron populations 1.22046 0.93770 1.01840 1.03006 1.21094 0.95206 0.93454 0.87879 1.22029 1.00092 0.95555 1.02618 1.48241 1.44140 1.30816 1.08857 1.19005 0.95160 0.94275 0.78033 1.21552 1.10963 1.22080 1.02080 0.93199 1.25611 0.96817 0.98812 0.96731 1.70014 1.29700 1.44165 1.12302 0.85692 0.79135 0.79610 0.77731 1.19258 1.20450 1.20543 1.17309 0.79031 0.80322 0.89298 1.90628 1.64285 1.65590 1.28844 1.21993 1.02735 1.00964 0.98584 1.21656 0.91350 0.90906 0.95741 1.19743 1.03675 1.02234 0.91194 1.23317 1.00915 1.00084 0.88495 1.45790 1.32384 1.30184 1.05744 1.22466 0.92060 0.90331 1.02585 1.25771 0.92772 0.91595 1.00184 1.70657 1.25739 1.25849 1.02097 0.93053 0.88898 0.93183 0.89722 0.94585 0.89625 0.92657 0.95297 0.96779 0.92546 0.86684 0.83302 0.76361 0.88861 0.87656 0.87441 0.74687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.07 71.98 0.65 -4.53 16 2 C 0.13 5.15 3.25 44.99 0.15 5.29 16 3 C -0.14 -5.56 8.60 71.98 0.62 -4.94 16 4 N -0.59 -28.38 2.39 -812.55 -1.94 -30.32 16 5 C 0.26 13.67 4.33 85.63 0.37 14.05 16 6 C -0.53 -29.80 7.82 25.60 0.20 -29.60 16 7 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 8 C 0.02 1.13 5.46 84.65 0.46 1.59 16 9 N -0.92 -54.52 13.29 21.44 0.28 -54.23 16 10 Si 0.95 45.08 29.54 68.60 2.03 47.10 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 C 0.55 26.62 7.43 85.11 0.63 27.25 16 15 O -0.61 -29.98 15.46 -4.51 -0.07 -30.05 16 16 C -0.22 -10.36 8.68 22.43 0.19 -10.17 16 17 C 0.02 0.96 9.62 23.80 0.23 1.19 16 18 C -0.04 -1.50 6.85 40.41 0.28 -1.22 16 19 C 0.01 0.22 11.53 83.69 0.96 1.19 16 20 N -0.46 -8.57 3.14 -550.91 -1.73 -10.30 16 21 C 0.07 0.41 11.16 127.77 1.43 1.84 16 22 C 0.18 4.59 12.55 180.10 2.26 6.85 16 23 N -0.53 -19.83 10.87 -189.05 -2.05 -21.88 16 24 H 0.05 1.94 6.52 -2.39 -0.02 1.93 16 25 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 3.45 6.91 -2.39 -0.02 3.43 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.05 2.37 6.92 -2.39 -0.02 2.35 16 31 H 0.03 1.59 6.18 -2.39 -0.01 1.57 16 32 H 0.01 0.83 6.25 -2.39 -0.01 0.81 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.12 6.17 5.84 -2.91 -0.02 6.15 16 35 H 0.15 5.13 7.46 -2.91 -0.02 5.10 16 36 H 0.22 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.24 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -78.56 337.46 5.98 -72.58 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 1.03 Total: 18.33 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 8.44 Total: 8.78 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.44 Total: -116.74 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.07 Total: -30.05 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -78.56 5.98 -72.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931327811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.562 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds