Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00136 * 2 1 4 4 H 1.09001 * 109.47097 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.47288 * 240.00588 * 3 2 1 6 6 C 1.52999 * 109.47285 * 65.00101 * 5 3 2 7 7 C 1.53003 * 109.47187 * 120.00501 * 3 2 1 8 8 C 1.50707 * 109.46946 * 295.00424 * 7 3 2 9 9 O 1.21284 * 119.99908 * 359.97438 * 8 7 3 10 10 N 1.34768 * 119.99811 * 179.97438 * 8 7 3 11 11 C 1.40156 * 120.00143 * 179.97438 * 10 8 7 12 12 C 1.40411 * 125.97049 * 0.03124 * 11 10 8 13 13 C 1.35241 * 107.86611 * 179.75956 * 12 11 10 14 14 N 1.34965 * 107.86302 * 0.38043 * 13 12 11 15 15 C 1.46495 * 125.97869 * 179.87777 * 14 13 12 16 16 C 1.50702 * 109.47571 * 124.71943 * 15 14 13 17 17 H 1.08002 * 119.99446 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00072 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 179.72119 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31221 * 125.97787 * 180.02562 * 11 10 8 25 25 H 1.07997 * 119.99909 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99954 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99954 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47004 * 184.99971 * 5 3 2 29 29 H 1.08998 * 109.47187 * 304.99622 * 5 3 2 30 30 H 1.08998 * 109.47400 * 59.99651 * 6 5 3 31 31 H 1.08999 * 109.47225 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46994 * 299.99877 * 6 5 3 33 33 H 1.08990 * 109.47364 * 175.00097 * 7 3 2 34 34 H 1.09000 * 109.47068 * 54.99955 * 7 3 2 35 35 H 0.97004 * 120.00026 * 359.97438 * 10 8 7 36 36 H 1.07998 * 126.06914 * 0.02562 * 12 11 10 37 37 H 1.08000 * 126.06933 * 180.24554 * 13 12 11 38 38 H 1.09000 * 109.47378 * 4.71603 * 15 14 13 39 39 H 1.09001 * 109.47153 * 244.71723 * 15 14 13 40 40 H 0.96999 * 120.00128 * 180.27192 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9430 1.3862 -1.2493 6 6 2.0563 1.4309 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0699 1.4298 2.4766 9 8 0.8627 1.3997 2.3634 10 7 2.6303 1.5024 3.7001 11 6 1.8182 1.5437 4.8417 12 6 0.4144 1.5159 4.8565 13 6 0.0121 1.5676 6.1467 14 7 1.1149 1.6344 6.9219 15 6 1.1353 1.7082 8.3849 16 6 1.9808 0.5874 8.9327 17 1 2.4551 -0.1104 8.2585 18 6 2.1479 0.4522 10.2946 19 7 2.8812 -0.5292 10.7729 20 14 1.3269 1.6586 11.4607 21 1 2.2424 2.7992 11.7181 22 1 0.0702 2.1608 10.8494 23 1 1.0155 0.9751 12.7417 24 7 2.2367 1.6148 6.0833 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.5539 2.2879 -1.2056 29 1 3.5905 0.5106 -1.2953 30 1 1.4088 2.3065 -2.4493 31 1 2.6829 1.4892 -3.3853 32 1 1.4454 0.5292 -2.5390 33 1 3.5541 2.2876 1.2056 34 1 3.5907 0.5104 1.2950 35 1 3.5959 1.5261 3.7907 36 1 -0.2296 1.4587 3.9915 37 1 -1.0103 1.5593 6.4948 38 1 0.1188 1.6169 8.7675 39 1 1.5555 2.6650 8.6946 40 1 2.9956 -0.6267 11.7311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933104274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = 55.399122 kcal Electronic energy + Delta-G solvation = -20746.424178 eV Core-core repulsion = 17563.500874 eV Total energy + Delta-G solvation = -3182.923304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73715 -39.50268 -36.92591 -34.67979 -33.28688 -31.86986 -31.48498 -30.36016 -29.36256 -27.17873 -25.08224 -22.65716 -21.88239 -21.42860 -20.16675 -19.63600 -19.47819 -17.06952 -16.90350 -16.41588 -15.71684 -15.45466 -14.88958 -14.80745 -14.41487 -14.09637 -13.77788 -13.63380 -13.15134 -13.04809 -12.56928 -12.36451 -12.33659 -12.19046 -11.93665 -11.52158 -11.38767 -11.12279 -11.00472 -10.88123 -10.63126 -10.49038 -10.08347 -9.96784 -9.63109 -9.52372 -9.11796 -8.76933 -8.16864 -7.50618 -6.23720 -4.26002 2.34622 2.43574 2.77660 2.90081 3.16071 3.21040 3.24132 3.71154 3.81277 4.22558 4.56080 4.59198 4.65003 5.01279 5.04371 5.06247 5.21467 5.28961 5.30908 5.44086 5.53424 5.66432 5.69777 5.73074 5.75224 5.92060 6.02553 6.12389 6.24312 6.40478 6.46009 6.58754 6.65770 6.71132 6.89580 7.25437 7.40197 7.61057 7.82735 8.31727 8.34051 8.58927 8.86102 9.31260 10.89014 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044535 B = 0.003036 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.568029 B = 9219.260870 C = 9402.186512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.043 4.043 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.131 4.131 8 C 0.517 3.483 9 O -0.510 6.510 10 N -0.635 5.635 11 C 0.261 3.739 12 C -0.283 4.283 13 C 0.050 3.950 14 N -0.320 5.320 15 C 0.232 3.768 16 C -0.534 4.534 17 H 0.085 0.915 18 C 0.076 3.924 19 N -0.888 5.888 20 Si 0.875 3.125 21 H -0.272 1.272 22 H -0.265 1.265 23 H -0.280 1.280 24 N -0.300 5.300 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.410 0.590 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.053 0.947 39 H 0.037 0.963 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 4.807 -21.922 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.062 4.062 4 H 0.101 0.899 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.171 4.171 8 C 0.303 3.697 9 O -0.383 6.383 10 N -0.283 5.283 11 C 0.007 3.993 12 C -0.314 4.314 13 C -0.099 4.099 14 N -0.102 5.102 15 C 0.113 3.887 16 C -0.572 4.572 17 H 0.103 0.897 18 C -0.128 4.128 19 N -0.525 5.525 20 Si 0.701 3.299 21 H -0.197 1.197 22 H -0.190 1.190 23 H -0.206 1.206 24 N -0.130 5.130 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.245 0.755 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.392 4.766 -20.947 21.528 hybrid contribution -0.473 0.365 0.552 0.813 sum -1.865 5.131 -20.396 21.114 Atomic orbital electron populations 1.23704 0.95919 1.01357 0.98863 1.22628 0.96039 0.97039 1.01613 1.20160 0.96553 0.97249 0.92266 0.89911 1.21539 0.97860 1.02005 0.93966 1.21757 0.99829 1.02183 0.97074 1.21702 0.98637 1.04710 0.92025 1.20691 0.89405 0.76059 0.83580 1.90637 1.14585 1.47184 1.85889 1.42606 1.09722 1.72759 1.03191 1.19167 0.90473 1.02875 0.86757 1.21546 0.93136 1.19531 0.97197 1.22555 0.93682 1.02602 0.91105 1.48604 1.01668 1.52625 1.07294 1.20043 0.99199 0.99108 0.70343 1.21112 1.31016 1.12145 0.92950 0.89671 1.24838 0.94752 0.95443 0.97762 1.69874 1.38368 1.30655 1.13629 0.86884 0.80354 0.81573 0.81104 1.19703 1.18964 1.20583 1.77390 1.09826 1.27841 0.97971 0.89214 0.88587 0.88051 0.91785 0.91770 0.92806 0.92980 0.92356 0.88466 0.88492 0.75461 0.82099 0.81495 0.92938 0.94508 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 13.22 29.02 0.38 -1.37 16 2 C -0.16 -1.57 6.76 -36.02 -0.24 -1.81 16 3 C -0.04 -0.38 1.82 -91.77 -0.17 -0.55 16 4 H 0.08 0.84 7.60 -51.93 -0.39 0.45 16 5 C -0.12 -0.79 5.39 -26.73 -0.14 -0.93 16 6 C -0.15 -1.03 9.73 37.16 0.36 -0.67 16 7 C -0.13 -1.14 5.16 -27.88 -0.14 -1.28 16 8 C 0.52 6.97 7.55 -10.99 -0.08 6.89 16 9 O -0.51 -8.26 11.30 5.55 0.06 -8.19 16 10 N -0.63 -9.60 5.45 -11.13 -0.06 -9.66 16 11 C 0.26 5.20 8.11 -154.39 -1.25 3.95 16 12 C -0.28 -5.51 9.61 -39.83 -0.38 -5.90 16 13 C 0.05 0.97 11.44 -17.24 -0.20 0.78 16 14 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16 15 C 0.23 5.54 5.33 -5.20 -0.03 5.52 16 16 C -0.53 -15.16 9.79 -34.44 -0.34 -15.50 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 19 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 20 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 N -0.30 -6.91 12.42 31.44 0.39 -6.52 16 25 H 0.09 0.91 8.06 -52.49 -0.42 0.49 16 26 H 0.10 1.08 7.83 -52.49 -0.41 0.67 16 27 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.43 7.38 -51.93 -0.38 0.04 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 5.06 8.82 -40.82 -0.36 4.70 16 36 H 0.16 3.03 5.92 -52.49 -0.31 2.72 16 37 H 0.17 2.60 8.06 -52.49 -0.42 2.17 16 38 H 0.05 1.15 7.12 -51.93 -0.37 0.79 16 39 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -33.48 336.01 -7.02 -40.50 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.02 Total: 5.58 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.33 Total: -8.85 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.87 Total: -49.65 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.06 Total: -8.19 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.48 -7.02 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933104274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.901 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds