Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00136 * 2 1 4 4 H 1.09001 * 109.47097 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.47288 * 240.00588 * 3 2 1 6 6 C 1.52999 * 109.47285 * 65.00101 * 5 3 2 7 7 C 1.53003 * 109.47187 * 120.00501 * 3 2 1 8 8 C 1.50707 * 109.46946 * 295.00424 * 7 3 2 9 9 O 1.21284 * 119.99908 * 359.97438 * 8 7 3 10 10 N 1.34768 * 119.99811 * 179.97438 * 8 7 3 11 11 C 1.40156 * 120.00143 * 179.97438 * 10 8 7 12 12 C 1.40411 * 125.97049 * 0.03124 * 11 10 8 13 13 C 1.35241 * 107.86611 * 179.75956 * 12 11 10 14 14 N 1.34965 * 107.86302 * 0.38043 * 13 12 11 15 15 C 1.46495 * 125.97869 * 179.87777 * 14 13 12 16 16 C 1.50702 * 109.47571 * 124.71943 * 15 14 13 17 17 H 1.08002 * 119.99446 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00072 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 179.72119 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 N 1.31221 * 125.97787 * 180.02562 * 11 10 8 25 25 H 1.07997 * 119.99909 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99954 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99954 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47004 * 184.99971 * 5 3 2 29 29 H 1.08998 * 109.47187 * 304.99622 * 5 3 2 30 30 H 1.08998 * 109.47400 * 59.99651 * 6 5 3 31 31 H 1.08999 * 109.47225 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46994 * 299.99877 * 6 5 3 33 33 H 1.08990 * 109.47364 * 175.00097 * 7 3 2 34 34 H 1.09000 * 109.47068 * 54.99955 * 7 3 2 35 35 H 0.97004 * 120.00026 * 359.97438 * 10 8 7 36 36 H 1.07998 * 126.06914 * 0.02562 * 12 11 10 37 37 H 1.08000 * 126.06933 * 180.24554 * 13 12 11 38 38 H 1.09000 * 109.47378 * 4.71603 * 15 14 13 39 39 H 1.09001 * 109.47153 * 244.71723 * 15 14 13 40 40 H 0.96999 * 120.00128 * 180.27192 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9430 1.3862 -1.2493 6 6 2.0563 1.4309 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 2.0699 1.4298 2.4766 9 8 0.8627 1.3997 2.3634 10 7 2.6303 1.5024 3.7001 11 6 1.8182 1.5437 4.8417 12 6 0.4144 1.5159 4.8565 13 6 0.0121 1.5676 6.1467 14 7 1.1149 1.6344 6.9219 15 6 1.1353 1.7082 8.3849 16 6 1.9808 0.5874 8.9327 17 1 2.4551 -0.1104 8.2585 18 6 2.1479 0.4522 10.2946 19 7 2.8812 -0.5292 10.7729 20 14 1.3269 1.6586 11.4607 21 1 2.2424 2.7992 11.7181 22 1 0.0702 2.1608 10.8494 23 1 1.0155 0.9751 12.7417 24 7 2.2367 1.6148 6.0833 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.5539 2.2879 -1.2056 29 1 3.5905 0.5106 -1.2953 30 1 1.4088 2.3065 -2.4493 31 1 2.6829 1.4892 -3.3853 32 1 1.4454 0.5292 -2.5390 33 1 3.5541 2.2876 1.2056 34 1 3.5907 0.5104 1.2950 35 1 3.5959 1.5261 3.7907 36 1 -0.2296 1.4587 3.9915 37 1 -1.0103 1.5593 6.4948 38 1 0.1188 1.6169 8.7675 39 1 1.5555 2.6650 8.6946 40 1 2.9956 -0.6267 11.7311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933104274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = 33.904588 kcal Electronic energy + Delta-G solvation = -20747.356251 eV Core-core repulsion = 17563.500874 eV Total energy + Delta-G solvation = -3183.855377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.20343 -40.69832 -37.74049 -36.09267 -35.16989 -33.20170 -32.55614 -31.34401 -30.89996 -28.94632 -26.02289 -24.39495 -22.85517 -22.43060 -21.68579 -20.86521 -20.37709 -19.10691 -18.26042 -17.73540 -17.04067 -16.71669 -16.23890 -15.83111 -15.62658 -15.23557 -14.84678 -14.72789 -14.68630 -14.38896 -14.03352 -13.83403 -13.71854 -13.03241 -12.96692 -12.81137 -12.63362 -12.16444 -12.14056 -11.99991 -11.82781 -11.65085 -11.58850 -11.42428 -11.30314 -10.88428 -10.78775 -9.98592 -9.74162 -9.07595 -8.38390 -6.48787 0.98253 1.33406 1.38609 1.43041 1.49029 1.52327 1.61429 2.27670 2.29049 2.42499 2.94175 3.65649 3.87726 3.92516 3.97827 4.21935 4.40215 4.45722 4.50907 4.59544 4.60713 4.69309 4.79821 4.85708 4.91307 4.92439 5.05850 5.10835 5.12832 5.20433 5.24201 5.24840 5.45172 5.52026 5.89240 5.92420 6.02048 6.09611 6.30347 6.41495 6.57292 7.04022 7.14336 7.22095 8.78714 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044535 B = 0.003036 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.568029 B = 9219.260870 C = 9402.186512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C -0.042 4.042 4 H 0.067 0.933 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.121 4.121 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.632 5.632 11 C 0.266 3.734 12 C -0.293 4.293 13 C 0.057 3.943 14 N -0.346 5.346 15 C 0.239 3.761 16 C -0.547 4.547 17 H 0.025 0.975 18 C 0.014 3.986 19 N -0.942 5.942 20 Si 0.956 3.044 21 H -0.265 1.265 22 H -0.230 1.230 23 H -0.278 1.278 24 N -0.352 5.352 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.207 0.793 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 6.385 -22.668 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.171 4.171 3 C -0.061 4.061 4 H 0.085 0.915 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.160 4.160 8 C 0.302 3.698 9 O -0.412 6.412 10 N -0.282 5.282 11 C 0.011 3.989 12 C -0.324 4.324 13 C -0.091 4.091 14 N -0.128 5.128 15 C 0.120 3.880 16 C -0.585 4.585 17 H 0.044 0.956 18 C -0.185 4.185 19 N -0.581 5.581 20 Si 0.777 3.223 21 H -0.190 1.190 22 H -0.153 1.153 23 H -0.203 1.203 24 N -0.182 5.182 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.260 0.740 36 H 0.186 0.814 37 H 0.224 0.776 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.919 6.348 -21.752 22.740 hybrid contribution -0.267 -0.215 0.607 0.697 sum -2.186 6.133 -21.145 22.125 Atomic orbital electron populations 1.23718 0.96516 1.01029 1.00487 1.22879 0.95937 0.98120 1.00158 1.20170 0.96605 0.95885 0.93434 0.91463 1.21513 0.97540 1.03281 0.92439 1.21766 0.99926 1.01536 0.97752 1.21800 0.98074 1.07285 0.88855 1.21691 0.89719 0.74470 0.83967 1.90623 1.16209 1.48175 1.86175 1.42867 1.10165 1.72768 1.02393 1.19602 0.91481 1.00612 0.87213 1.21757 0.93163 1.19932 0.97576 1.23235 0.94592 1.00471 0.90788 1.48499 1.02570 1.54678 1.07066 1.19879 0.99558 0.97261 0.71335 1.21230 1.31763 1.12761 0.92733 0.95616 1.25932 0.95222 0.97592 0.99748 1.70049 1.40403 1.33263 1.14396 0.85609 0.80421 0.78376 0.77915 1.18983 1.15307 1.20291 1.77306 1.11103 1.30496 0.99321 0.89058 0.89605 0.87200 0.90236 0.90703 0.93287 0.91841 0.93252 0.85371 0.86175 0.74030 0.81443 0.77581 0.90055 0.93809 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 13.22 67.78 0.90 -3.03 16 2 C -0.15 -2.91 6.76 25.65 0.17 -2.74 16 3 C -0.04 -0.66 1.82 -11.54 -0.02 -0.68 16 4 H 0.07 1.29 7.60 -2.39 -0.02 1.27 16 5 C -0.11 -1.19 5.39 30.59 0.16 -1.03 16 6 C -0.15 -1.81 9.73 71.98 0.70 -1.11 16 7 C -0.12 -1.76 5.16 29.85 0.15 -1.61 16 8 C 0.51 13.11 7.55 87.66 0.66 13.77 16 9 O -0.54 -17.02 11.30 -3.04 -0.03 -17.06 16 10 N -0.63 -18.57 5.45 -307.52 -1.68 -20.25 16 11 C 0.27 10.58 8.11 133.33 1.08 11.66 16 12 C -0.29 -11.24 9.61 22.11 0.21 -11.03 16 13 C 0.06 2.15 11.44 83.52 0.96 3.11 16 14 N -0.35 -15.75 3.67 -351.85 -1.29 -17.04 16 15 C 0.24 11.21 5.33 85.63 0.46 11.67 16 16 C -0.55 -31.85 9.79 25.60 0.25 -31.60 16 17 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 18 C 0.01 0.79 5.47 84.65 0.46 1.25 16 19 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 20 Si 0.96 40.91 27.47 68.60 1.88 42.80 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 N -0.35 -16.48 12.42 -54.45 -0.68 -17.16 16 25 H 0.09 1.87 8.06 -2.91 -0.02 1.85 16 26 H 0.09 2.00 7.83 -2.91 -0.02 1.98 16 27 H 0.11 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.67 7.38 -2.39 -0.02 0.65 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.42 10.01 8.82 -92.71 -0.82 9.19 16 36 H 0.17 6.19 5.92 -2.91 -0.02 6.17 16 37 H 0.21 5.80 8.06 -2.91 -0.02 5.77 16 38 H 0.08 3.32 7.12 -2.39 -0.02 3.31 16 39 H 0.04 1.98 7.57 -2.39 -0.02 1.96 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -76.69 336.01 4.81 -71.89 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.15 Total: 26.25 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 6.15 Total: -11.37 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.34 Total: -112.50 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.03 Total: -17.06 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.80 kcal Total: -76.69 4.81 -71.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933104274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.790 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds