Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00531 * 2 1 4 4 H 1.08997 * 109.46262 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47023 * 119.99837 * 3 2 1 6 6 C 1.52997 * 109.47721 * 295.00471 * 5 3 2 7 7 C 1.52990 * 109.47136 * 240.00149 * 3 2 1 8 8 C 1.50703 * 109.47398 * 64.99914 * 7 3 2 9 9 O 1.21293 * 119.99482 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 3 11 11 C 1.40158 * 120.00060 * 180.27594 * 10 8 7 12 12 C 1.40410 * 125.97127 * 359.43692 * 11 10 8 13 13 C 1.35239 * 107.86797 * 179.86633 * 12 11 10 14 14 N 1.34968 * 107.85956 * 0.39098 * 13 12 11 15 15 C 1.46493 * 125.97638 * 179.74845 * 14 13 12 16 16 C 1.50708 * 109.47241 * 124.97814 * 15 14 13 17 17 H 1.08001 * 119.99590 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00181 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99696 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46887 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47256 * 119.99856 * 20 18 16 23 23 H 1.48503 * 109.46650 * 240.00116 * 20 18 16 24 24 N 1.31217 * 125.97415 * 179.74633 * 11 10 8 25 25 H 1.07997 * 120.00214 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00116 * 359.97438 * 1 2 3 27 27 H 1.08010 * 119.99892 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47313 * 55.00608 * 5 3 2 29 29 H 1.08997 * 109.47076 * 175.00105 * 5 3 2 30 30 H 1.08997 * 109.47800 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46839 * 300.00428 * 6 5 3 32 32 H 1.08997 * 109.47144 * 59.99676 * 6 5 3 33 33 H 1.08998 * 109.47508 * 304.99714 * 7 3 2 34 34 H 1.09002 * 109.47337 * 185.00000 * 7 3 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.07998 * 126.06796 * 0.02562 * 12 11 10 37 37 H 1.08003 * 126.07019 * 180.14616 * 13 12 11 38 38 H 1.08998 * 109.47809 * 244.97667 * 15 14 13 39 39 H 1.08995 * 109.47252 * 4.98073 * 15 14 13 40 40 H 0.97008 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3860 1.2492 6 6 2.0566 1.4306 2.4954 7 6 2.9431 1.3860 -1.2492 8 6 2.0698 1.4300 -2.4766 9 8 0.8625 1.3991 -2.3632 10 7 2.6301 1.5026 -3.7002 11 6 1.8177 1.5494 -4.8413 12 6 0.4141 1.5169 -4.8564 13 6 0.0112 1.5849 -6.1456 14 7 1.1141 1.6490 -6.9210 15 6 1.1342 1.7293 -8.3836 16 6 1.9324 2.9345 -8.8097 17 1 2.3803 3.5762 -8.0654 18 6 2.0909 3.2178 -10.1497 19 7 1.5451 2.4366 -11.0560 20 14 3.0809 4.7113 -10.6778 21 1 3.5852 5.4214 -9.4750 22 1 4.2285 4.2745 -11.5128 23 1 2.2153 5.6256 -11.4653 24 7 2.2361 1.6254 -6.0827 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 3.5906 0.5103 1.2952 29 1 3.5541 2.2876 1.2056 30 1 2.6832 1.4887 3.3853 31 1 1.4091 2.3063 2.4494 32 1 1.4456 0.5290 2.5390 33 1 3.5905 0.5104 -1.2951 34 1 3.5541 2.2877 -1.2056 35 1 3.5956 1.5270 -3.7908 36 1 -0.2297 1.4519 -3.9917 37 1 -1.0113 1.5837 -6.4932 38 1 1.5922 0.8278 -8.7908 39 1 0.1140 1.8188 -8.7567 40 1 1.6569 2.6358 -11.9988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933104275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = 49.282782 kcal Electronic energy + Delta-G solvation = -20719.149758 eV Core-core repulsion = 17535.961229 eV Total energy + Delta-G solvation = -3183.188529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66614 -39.45284 -36.91411 -34.62825 -33.34649 -31.87303 -31.29172 -30.20408 -29.27340 -26.73815 -25.06248 -22.96834 -21.88911 -21.38533 -20.18884 -19.63027 -19.42060 -16.89476 -16.60399 -16.40443 -15.70904 -15.35656 -14.84911 -14.80455 -14.26197 -14.16803 -13.88391 -13.64012 -13.18795 -12.77818 -12.36561 -12.33368 -12.24545 -12.05994 -11.71702 -11.51458 -11.38448 -11.04464 -10.99697 -10.87311 -10.63090 -10.38674 -10.26133 -9.95969 -9.60571 -9.46206 -9.11302 -8.63966 -8.09805 -7.43574 -6.24587 -4.29515 2.37253 2.44951 2.85197 2.97513 3.21994 3.29449 3.36230 3.76708 3.91574 4.32037 4.56710 4.59850 4.66541 5.02037 5.06415 5.10657 5.21115 5.28896 5.30736 5.48481 5.58460 5.68445 5.70070 5.75463 5.84530 5.92007 6.02567 6.12534 6.32732 6.52189 6.65179 6.70513 6.87393 6.89191 7.05865 7.46677 7.61376 7.71960 7.89966 8.06227 8.35258 8.66285 8.81014 9.36147 10.84182 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037471 B = 0.003087 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.070241 B = 9066.833850 C = 9572.847133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.516 3.484 9 O -0.510 6.510 10 N -0.635 5.635 11 C 0.258 3.742 12 C -0.287 4.287 13 C 0.050 3.950 14 N -0.320 5.320 15 C 0.258 3.742 16 C -0.527 4.527 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.307 5.307 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.409 0.591 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 -3.398 22.223 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.101 0.899 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.170 4.170 8 C 0.302 3.698 9 O -0.383 6.383 10 N -0.283 5.283 11 C 0.004 3.996 12 C -0.318 4.318 13 C -0.100 4.100 14 N -0.102 5.102 15 C 0.140 3.860 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.138 5.138 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.244 0.756 36 H 0.177 0.823 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.736 -3.381 21.226 21.563 hybrid contribution 0.327 0.679 -0.220 0.785 sum 2.063 -2.702 21.006 21.279 Atomic orbital electron populations 1.23705 0.95921 1.01366 0.98830 1.22618 0.96022 0.97001 1.01652 1.20158 0.96577 0.97264 0.92266 0.89877 1.21538 0.97859 1.01984 0.93982 1.21757 0.99833 1.02192 0.97066 1.21694 0.98626 1.04645 0.92080 1.20680 0.89408 0.76164 0.83582 1.90643 1.14570 1.47179 1.85876 1.42596 1.09643 1.72772 1.03267 1.19156 0.90468 1.03163 0.86776 1.21519 0.93085 1.19977 0.97229 1.22563 0.93846 1.02472 0.91157 1.49067 1.01393 1.51586 1.08141 1.19739 0.99476 0.99151 0.67595 1.21299 1.33230 1.09710 0.92314 0.91274 1.24953 0.95742 0.97348 0.96109 1.69931 1.44218 1.37931 1.01299 0.86272 0.79657 0.81945 0.78629 1.19564 1.20687 1.20759 1.77325 1.10386 1.28011 0.98073 0.89243 0.88551 0.88111 0.91817 0.91773 0.92986 0.92778 0.92373 0.88592 0.88479 0.75591 0.82294 0.81591 0.93753 0.92566 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 13.22 29.02 0.38 -1.35 16 2 C -0.15 -1.54 6.76 -36.02 -0.24 -1.78 16 3 C -0.04 -0.39 1.82 -91.78 -0.17 -0.56 16 4 H 0.08 0.87 7.60 -51.93 -0.39 0.47 16 5 C -0.12 -0.80 5.39 -26.73 -0.14 -0.94 16 6 C -0.15 -1.04 9.73 37.16 0.36 -0.68 16 7 C -0.13 -1.15 5.16 -27.89 -0.14 -1.29 16 8 C 0.52 7.03 7.55 -10.98 -0.08 6.95 16 9 O -0.51 -8.38 11.30 5.55 0.06 -8.31 16 10 N -0.63 -9.67 5.45 -11.13 -0.06 -9.73 16 11 C 0.26 5.19 8.11 -154.39 -1.25 3.94 16 12 C -0.29 -5.73 9.61 -39.83 -0.38 -6.11 16 13 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 14 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 15 C 0.26 6.62 6.26 -5.19 -0.03 6.58 16 16 C -0.53 -14.76 9.24 -34.44 -0.32 -15.08 16 17 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 20 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 N -0.31 -7.14 12.42 31.44 0.39 -6.75 16 25 H 0.09 0.89 8.06 -52.49 -0.42 0.46 16 26 H 0.10 1.10 7.83 -52.49 -0.41 0.69 16 27 H 0.10 0.92 8.06 -52.48 -0.42 0.50 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.41 5.05 8.82 -40.82 -0.36 4.69 16 36 H 0.16 3.07 5.92 -52.49 -0.31 2.76 16 37 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 38 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -32.16 339.62 -7.37 -39.53 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.05 Total: 4.13 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.32 Total: -7.92 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.84 Total: -48.95 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.06 Total: -8.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.16 -7.37 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933104275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.815 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds