Wall clock time and date at job start Mon Mar 30 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00531 * 2 1 4 4 H 1.08997 * 109.46262 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47023 * 119.99837 * 3 2 1 6 6 C 1.52997 * 109.47721 * 295.00471 * 5 3 2 7 7 C 1.52990 * 109.47136 * 240.00149 * 3 2 1 8 8 C 1.50703 * 109.47398 * 64.99914 * 7 3 2 9 9 O 1.21293 * 119.99482 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 3 11 11 C 1.40158 * 120.00060 * 180.27594 * 10 8 7 12 12 C 1.40410 * 125.97127 * 359.43692 * 11 10 8 13 13 C 1.35239 * 107.86797 * 179.86633 * 12 11 10 14 14 N 1.34968 * 107.85956 * 0.39098 * 13 12 11 15 15 C 1.46493 * 125.97638 * 179.74845 * 14 13 12 16 16 C 1.50708 * 109.47241 * 124.97814 * 15 14 13 17 17 H 1.08001 * 119.99590 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00181 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99696 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46887 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47256 * 119.99856 * 20 18 16 23 23 H 1.48503 * 109.46650 * 240.00116 * 20 18 16 24 24 N 1.31217 * 125.97415 * 179.74633 * 11 10 8 25 25 H 1.07997 * 120.00214 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00116 * 359.97438 * 1 2 3 27 27 H 1.08010 * 119.99892 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47313 * 55.00608 * 5 3 2 29 29 H 1.08997 * 109.47076 * 175.00105 * 5 3 2 30 30 H 1.08997 * 109.47800 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.46839 * 300.00428 * 6 5 3 32 32 H 1.08997 * 109.47144 * 59.99676 * 6 5 3 33 33 H 1.08998 * 109.47508 * 304.99714 * 7 3 2 34 34 H 1.09002 * 109.47337 * 185.00000 * 7 3 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.07998 * 126.06796 * 0.02562 * 12 11 10 37 37 H 1.08003 * 126.07019 * 180.14616 * 13 12 11 38 38 H 1.08998 * 109.47809 * 244.97667 * 15 14 13 39 39 H 1.08995 * 109.47252 * 4.98073 * 15 14 13 40 40 H 0.97008 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3860 1.2492 6 6 2.0566 1.4306 2.4954 7 6 2.9431 1.3860 -1.2492 8 6 2.0698 1.4300 -2.4766 9 8 0.8625 1.3991 -2.3632 10 7 2.6301 1.5026 -3.7002 11 6 1.8177 1.5494 -4.8413 12 6 0.4141 1.5169 -4.8564 13 6 0.0112 1.5849 -6.1456 14 7 1.1141 1.6490 -6.9210 15 6 1.1342 1.7293 -8.3836 16 6 1.9324 2.9345 -8.8097 17 1 2.3803 3.5762 -8.0654 18 6 2.0909 3.2178 -10.1497 19 7 1.5451 2.4366 -11.0560 20 14 3.0809 4.7113 -10.6778 21 1 3.5852 5.4214 -9.4750 22 1 4.2285 4.2745 -11.5128 23 1 2.2153 5.6256 -11.4653 24 7 2.2361 1.6254 -6.0827 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 3.5906 0.5103 1.2952 29 1 3.5541 2.2876 1.2056 30 1 2.6832 1.4887 3.3853 31 1 1.4091 2.3063 2.4494 32 1 1.4456 0.5290 2.5390 33 1 3.5905 0.5104 -1.2951 34 1 3.5541 2.2877 -1.2056 35 1 3.5956 1.5270 -3.7908 36 1 -0.2297 1.4519 -3.9917 37 1 -1.0113 1.5837 -6.4932 38 1 1.5922 0.8278 -8.7908 39 1 0.1140 1.8188 -8.7567 40 1 1.6569 2.6358 -11.9988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933104275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:58 Heat of formation + Delta-G solvation = 30.352797 kcal Electronic energy + Delta-G solvation = -20719.970624 eV Core-core repulsion = 17535.961229 eV Total energy + Delta-G solvation = -3184.009394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.17943 -40.67991 -37.73022 -36.08957 -35.23448 -32.92962 -32.54489 -31.24468 -30.88039 -28.56951 -26.06680 -24.73653 -22.83506 -22.42325 -21.73954 -20.82980 -20.36830 -18.69883 -18.25636 -17.71702 -17.02946 -16.68809 -16.19218 -15.86432 -15.66391 -15.37257 -14.78742 -14.68495 -14.42395 -14.28211 -13.95950 -13.80113 -13.62586 -13.00404 -12.92317 -12.81783 -12.72075 -12.31852 -12.13331 -12.02947 -11.97788 -11.63112 -11.57730 -11.35697 -11.29766 -10.78312 -10.72549 -9.97731 -9.72587 -9.08668 -8.33975 -6.48338 1.00632 1.36881 1.37568 1.43534 1.52369 1.53642 1.62132 2.30051 2.31539 2.48008 2.97574 3.66757 3.88274 3.93515 4.02074 4.28538 4.40847 4.46718 4.51305 4.61375 4.69865 4.80014 4.86880 4.93213 4.94442 5.02336 5.06527 5.11673 5.13488 5.21824 5.25135 5.45499 5.52337 5.55934 5.79308 5.89840 5.98780 6.11118 6.27099 6.36139 6.64479 7.07048 7.21812 7.24366 8.73816 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037471 B = 0.003087 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.070241 B = 9066.833850 C = 9572.847133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C -0.043 4.043 4 H 0.064 0.936 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.120 4.120 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.630 5.630 11 C 0.266 3.734 12 C -0.293 4.293 13 C 0.052 3.948 14 N -0.346 5.346 15 C 0.272 3.728 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.973 3.027 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.270 1.270 24 N -0.349 5.349 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.423 0.577 36 H 0.167 0.833 37 H 0.198 0.802 38 H 0.021 0.979 39 H 0.057 0.943 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -2.887 23.582 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C -0.062 4.062 4 H 0.082 0.918 5 C -0.147 4.147 6 C -0.210 4.210 7 C -0.159 4.159 8 C 0.301 3.699 9 O -0.413 6.413 10 N -0.280 5.280 11 C 0.011 3.989 12 C -0.324 4.324 13 C -0.096 4.096 14 N -0.128 5.128 15 C 0.154 3.846 16 C -0.585 4.585 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.560 5.560 20 Si 0.797 3.203 21 H -0.199 1.199 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.180 5.180 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.131 0.869 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.261 0.739 36 H 0.185 0.815 37 H 0.215 0.785 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.123 -2.879 22.617 23.013 hybrid contribution -0.145 0.474 -0.503 0.706 sum 2.978 -2.405 22.115 22.444 Atomic orbital electron populations 1.23714 0.96575 1.00974 1.00588 1.22872 0.95862 0.98091 1.00060 1.20172 0.96619 0.95934 0.93508 0.91779 1.21510 0.97527 1.03309 0.92392 1.21768 0.99933 1.01508 0.97802 1.21791 0.98034 1.07337 0.88754 1.21714 0.89714 0.74498 0.84003 1.90632 1.16299 1.48194 1.86173 1.42841 1.10132 1.72767 1.02292 1.19558 0.91331 1.00671 0.87304 1.21713 0.93335 1.20058 0.97280 1.23159 0.94563 1.00837 0.91058 1.48825 1.02494 1.53947 1.07549 1.19323 0.98771 0.97288 0.69261 1.21421 1.34073 1.10460 0.92498 0.93004 1.25764 0.96518 1.00099 0.95928 1.70006 1.44907 1.39297 1.01785 0.85274 0.78430 0.78478 0.78073 1.19866 1.19761 1.19506 1.77243 1.11080 1.30436 0.99266 0.88915 0.89895 0.86880 0.90474 0.90381 0.91825 0.93467 0.93159 0.85794 0.85595 0.73933 0.81546 0.78496 0.96137 0.92514 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 13.22 67.79 0.90 -2.98 16 2 C -0.15 -2.77 6.76 25.66 0.17 -2.59 16 3 C -0.04 -0.68 1.82 -11.54 -0.02 -0.70 16 4 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16 5 C -0.11 -1.16 5.39 30.59 0.16 -1.00 16 6 C -0.15 -1.81 9.73 71.98 0.70 -1.11 16 7 C -0.12 -1.70 5.16 29.85 0.15 -1.55 16 8 C 0.51 13.00 7.55 87.66 0.66 13.66 16 9 O -0.54 -17.21 11.30 -3.07 -0.03 -17.24 16 10 N -0.63 -18.25 5.45 -307.51 -1.68 -19.93 16 11 C 0.27 10.63 8.11 133.33 1.08 11.71 16 12 C -0.29 -11.59 9.61 22.11 0.21 -11.38 16 13 C 0.05 2.12 11.44 83.52 0.96 3.07 16 14 N -0.35 -16.59 3.67 -351.85 -1.29 -17.88 16 15 C 0.27 14.36 6.26 85.64 0.54 14.90 16 16 C -0.55 -31.16 9.24 25.60 0.24 -30.93 16 17 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 18 C 0.02 0.95 5.46 84.65 0.46 1.42 16 19 N -0.92 -52.53 13.29 21.45 0.28 -52.25 16 20 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 N -0.35 -16.43 12.42 -54.45 -0.68 -17.11 16 25 H 0.09 1.84 8.06 -2.91 -0.02 1.82 16 26 H 0.08 1.96 7.83 -2.91 -0.02 1.93 16 27 H 0.11 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.05 0.67 7.38 -2.39 -0.02 0.65 16 33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 9.63 8.82 -92.71 -0.82 8.81 16 36 H 0.17 6.35 5.92 -2.91 -0.02 6.34 16 37 H 0.20 6.38 8.06 -2.91 -0.02 6.35 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 40 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -70.25 339.62 5.05 -65.20 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.21 Total: 20.88 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 6.21 Total: -7.47 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.36 Total: -107.16 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.03 Total: -17.24 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -70.25 5.05 -65.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933104275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.548 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds