Wall clock time and date at job start Mon Mar 30 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.09008 * 109.46986 * 304.99575 * 3 2 1 5 5 C 1.50702 * 109.47021 * 185.00002 * 3 2 1 6 6 H 1.08004 * 119.99441 * 239.99416 * 5 3 2 7 7 C 1.37879 * 120.00172 * 60.00029 * 5 3 2 8 8 N 1.31511 * 119.99731 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99838 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47535 * 59.99383 * 9 7 5 11 11 H 1.48499 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47095 * 299.99607 * 9 7 5 13 13 N 1.46492 * 109.47371 * 64.99499 * 3 2 1 14 14 C 1.34777 * 120.00336 * 275.00037 * 13 3 2 15 15 O 1.21628 * 119.99552 * 4.30402 * 14 13 3 16 16 C 1.47167 * 120.00333 * 184.29972 * 14 13 3 17 17 C 1.38402 * 126.87932 * 354.89721 * 16 14 13 18 18 C 1.39675 * 105.35459 * 180.02562 * 17 16 14 19 19 C 1.50707 * 126.06944 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.49750 * 343.74787 * 19 18 17 21 21 C 1.52996 * 117.49676 * 275.08919 * 19 18 17 22 22 N 1.30862 * 107.86361 * 0.02562 * 18 17 16 23 23 N 1.28444 * 110.92668 * 359.71392 * 22 18 17 24 24 C 1.46499 * 125.19051 * 180.31381 * 23 22 18 25 25 H 1.08996 * 109.47137 * 60.00561 * 1 2 3 26 26 H 1.09008 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47721 * 300.00355 * 1 2 3 28 28 H 1.08996 * 109.47721 * 239.99645 * 2 1 3 29 29 H 1.08996 * 109.47137 * 119.99438 * 2 1 3 30 30 H 0.97005 * 119.99715 * 180.02562 * 8 7 5 31 31 H 0.97002 * 120.00063 * 95.00149 * 13 3 2 32 32 H 1.07999 * 127.32692 * 0.02562 * 17 16 14 33 33 H 1.09002 * 115.54939 * 129.41087 * 19 18 17 34 34 H 1.09006 * 117.49766 * 359.97438 * 20 19 18 35 35 H 1.08996 * 117.50074 * 145.02011 * 20 19 18 36 36 H 1.09007 * 117.49402 * 214.97855 * 21 19 18 37 37 H 1.08996 * 117.50091 * 359.97157 * 21 19 18 38 38 H 1.09000 * 109.47138 * 275.01772 * 24 23 22 39 39 H 1.09002 * 109.46862 * 35.02096 * 24 23 22 40 40 H 1.09000 * 109.47029 * 155.01760 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8801 -1.3810 10 1 6.5967 0.1454 -0.2341 11 1 6.3979 0.2157 -2.6497 12 1 6.5004 2.2800 -1.3807 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6644 1.3668 15 8 -0.3704 2.5646 0.4608 16 6 0.0802 3.4042 2.5886 17 6 0.8418 3.5232 3.7381 18 6 0.0831 4.3139 4.6041 19 6 0.4777 4.7351 5.9963 20 6 1.6223 3.9730 6.6671 21 6 0.1816 3.7620 7.1393 22 7 -1.0317 4.6233 3.9925 23 7 -1.0646 4.1145 2.8136 24 6 -2.1636 4.2699 1.8574 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8293 -0.0619 -2.9495 31 1 2.2717 2.1233 1.9977 32 1 1.8156 3.0955 3.9257 33 1 0.3909 5.8009 6.2074 34 1 2.0897 3.1668 6.1016 35 1 2.2883 4.5374 7.3199 36 1 -0.0997 4.1878 8.1025 37 1 -0.2990 2.8175 6.8844 38 1 -2.9267 3.5172 2.0555 39 1 -2.5981 5.2641 1.9617 40 1 -1.7836 4.1440 0.8436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935398848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:47 Heat of formation + Delta-G solvation = 41.822365 kcal Electronic energy + Delta-G solvation = -21639.938959 eV Core-core repulsion = 18456.426922 eV Total energy + Delta-G solvation = -3183.512037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.58235 -40.51405 -38.07774 -36.96449 -34.56394 -33.79937 -33.12998 -31.54467 -28.92071 -28.16654 -25.36891 -24.50473 -23.76867 -23.11343 -21.92552 -21.17268 -20.50285 -19.18592 -17.93683 -17.44634 -17.22594 -16.89617 -16.48305 -16.06261 -15.76812 -15.21989 -15.08102 -14.72690 -14.54026 -13.92276 -13.71777 -13.52373 -13.40365 -13.17058 -12.91014 -12.86168 -12.64525 -12.26511 -12.20575 -12.12215 -12.00068 -11.57995 -11.49330 -11.13792 -11.08120 -10.89439 -10.52047 -10.18187 -9.79586 -9.65730 -8.15433 -6.32521 0.25983 1.40334 1.47996 1.48328 1.49108 1.56751 2.25657 2.35800 2.55391 2.97152 3.14692 3.40785 3.70372 3.95769 4.06345 4.17541 4.26217 4.30415 4.42161 4.50319 4.52420 4.57981 4.62619 4.75107 4.82804 4.88780 5.06634 5.09540 5.25695 5.27836 5.35873 5.42912 5.46761 5.51055 5.59887 5.71748 5.78163 5.88851 6.15535 6.72650 6.81427 7.05629 7.28109 7.43974 8.89730 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.004765 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.105567 B = 5874.253602 C = 6836.594530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.282 3.718 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.685 5.685 14 C 0.575 3.425 15 O -0.573 6.573 16 C -0.045 4.045 17 C -0.182 4.182 18 C 0.049 3.951 19 C -0.090 4.090 20 C -0.154 4.154 21 C -0.163 4.163 22 N -0.292 5.292 23 N -0.266 5.266 24 C 0.083 3.917 25 H 0.030 0.970 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.179 0.821 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 6.361 15.671 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.180 3.820 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.333 5.333 14 C 0.360 3.640 15 O -0.454 6.454 16 C -0.174 4.174 17 C -0.211 4.211 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.192 4.192 21 C -0.201 4.201 22 N -0.125 5.125 23 N -0.053 5.053 24 C -0.056 4.056 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.240 0.760 32 H 0.196 0.804 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.218 6.792 14.808 17.437 hybrid contribution 1.563 -0.552 -0.604 1.765 sum -4.655 6.239 14.204 16.197 Atomic orbital electron populations 1.21702 0.96922 0.99021 1.00394 1.21802 0.93794 0.98987 1.01464 1.18471 0.93862 0.89234 0.80482 0.97733 1.21516 0.91179 1.39231 1.06865 0.90935 1.25710 1.03157 0.94274 0.94959 1.70029 1.37107 1.38135 1.09844 0.85448 0.79232 0.78420 0.77552 1.18914 1.21270 1.19736 1.46004 1.14331 1.54956 1.18022 1.17180 0.82897 0.79008 0.84883 1.90727 1.50111 1.62387 1.42181 1.21568 0.91965 1.05556 0.98323 1.22346 1.02280 1.04479 0.92003 1.21474 0.91064 1.00668 0.97479 1.20142 1.06260 0.98682 0.85850 1.23143 0.91234 1.02434 1.02365 1.23055 0.99241 0.99916 0.97876 1.73017 1.23712 1.21410 0.94357 1.45756 1.14758 1.34093 1.10730 1.22467 0.86870 1.05319 0.90978 0.95106 0.93839 0.93954 0.90692 0.94082 0.92546 0.75988 0.80387 0.85622 0.88388 0.85962 0.86402 0.89885 0.88893 0.86959 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.46 71.98 0.61 -4.83 16 2 C -0.12 -5.85 5.45 30.59 0.17 -5.68 16 3 C 0.28 14.05 2.24 44.25 0.10 14.15 16 4 H 0.00 0.28 7.64 -2.38 -0.02 0.26 16 5 C -0.55 -28.23 8.73 25.60 0.22 -28.01 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -50.86 11.29 21.45 0.24 -50.62 16 9 Si 0.97 41.03 29.54 68.60 2.03 43.06 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 N -0.68 -28.03 5.01 -449.63 -2.25 -30.28 16 14 C 0.57 23.08 6.51 86.59 0.56 23.64 16 15 O -0.57 -25.77 11.47 -4.12 -0.05 -25.82 16 16 C -0.05 -1.55 6.96 40.79 0.28 -1.27 16 17 C -0.18 -5.23 9.78 22.66 0.22 -5.01 16 18 C 0.05 1.35 6.85 43.05 0.30 1.64 16 19 C -0.09 -1.78 6.33 -11.54 -0.07 -1.85 16 20 C -0.15 -2.32 10.03 30.62 0.31 -2.01 16 21 C -0.16 -2.64 10.24 30.62 0.31 -2.33 16 22 N -0.29 -8.93 11.90 -47.49 -0.57 -9.49 16 23 N -0.27 -8.45 3.75 -356.02 -1.33 -9.78 16 24 C 0.08 2.16 10.91 127.77 1.39 3.55 16 25 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 26 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.04 1.83 5.55 -2.39 -0.01 1.81 16 28 H 0.07 4.03 5.95 -2.39 -0.01 4.02 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 31 H 0.40 14.23 7.57 -92.71 -0.70 13.53 16 32 H 0.18 4.17 7.01 -2.91 -0.02 4.15 16 33 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 1.53 7.22 -2.38 -0.02 1.52 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.10 2.93 6.16 -2.39 -0.01 2.91 16 Total: -1.00 -63.98 328.13 3.27 -60.70 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.35 Total: 28.76 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.85 Total: -6.53 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.91 Total: -100.17 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -63.98 3.27 -60.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935398848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.523 kcal (2) G-P(sol) polarization free energy of solvation -63.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds