Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 H 1.08997 * 109.47380 * 304.82519 * 3 2 1 5 5 C 1.50693 * 109.47192 * 184.81778 * 3 2 1 6 6 H 1.08002 * 120.00328 * 245.31290 * 5 3 2 7 7 C 1.37878 * 120.00041 * 65.30864 * 5 3 2 8 8 N 1.31519 * 119.99870 * 6.07336 * 7 5 3 9 9 Si 1.86797 * 120.00159 * 186.06706 * 7 5 3 10 10 H 1.48505 * 109.46855 * 94.99871 * 9 7 5 11 11 H 1.48498 * 109.47270 * 214.99728 * 9 7 5 12 12 H 1.48498 * 109.47246 * 334.99887 * 9 7 5 13 13 N 1.46509 * 109.46695 * 64.81990 * 3 2 1 14 14 C 1.34773 * 120.00030 * 275.00071 * 13 3 2 15 15 O 1.21633 * 120.00147 * 4.82182 * 14 13 3 16 16 C 1.47156 * 119.99965 * 184.82965 * 14 13 3 17 17 C 1.38402 * 126.88786 * 354.82294 * 16 14 13 18 18 C 1.39673 * 105.36591 * 180.02562 * 17 16 14 19 19 N 1.30863 * 107.85934 * 0.02562 * 18 17 16 20 20 N 1.28444 * 110.92708 * 359.70935 * 19 18 17 21 21 C 1.46504 * 125.19408 * 180.28658 * 20 19 18 22 22 C 1.53779 * 113.61223 * 42.95565 * 21 20 19 23 23 C 1.53960 * 87.01942 * 220.04966 * 22 21 20 24 24 C 1.53782 * 87.10755 * 25.36802 * 23 22 21 25 25 H 1.08995 * 109.47299 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47037 * 59.99722 * 1 2 3 27 27 H 1.08997 * 109.47111 * 299.99936 * 1 2 3 28 28 H 1.08992 * 109.46941 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.46756 * 240.00385 * 2 1 3 30 30 H 0.96996 * 120.00136 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99640 * 95.00040 * 13 3 2 32 32 H 1.08003 * 127.31547 * 0.02562 * 17 16 14 33 33 H 1.07997 * 126.06857 * 180.02562 * 18 17 16 34 34 H 1.08994 * 112.85131 * 174.16207 * 21 20 19 35 35 H 1.08998 * 113.61801 * 334.57344 * 22 21 20 36 36 H 1.09005 * 113.60953 * 105.47909 * 22 21 20 37 37 H 1.08999 * 113.53918 * 270.81336 * 23 22 21 38 38 H 1.08996 * 113.73812 * 139.94266 * 23 22 21 39 39 H 1.09005 * 113.61373 * 220.08715 * 24 23 22 40 40 H 1.09000 * 113.61511 * 89.18701 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6079 1.9807 -0.8436 5 6 3.5422 1.4442 -0.1193 6 1 4.1483 1.8115 0.6957 7 6 4.1430 0.9767 -1.2689 8 7 3.4069 0.6415 -2.3060 9 14 6.0024 0.8197 -1.3536 10 1 6.3983 -0.5687 -1.0057 11 1 6.4638 1.1360 -2.7292 12 1 6.6235 1.7669 -0.3932 13 7 1.6487 2.0988 1.2501 14 6 0.4311 2.6657 1.3610 15 8 -0.3751 2.5571 0.4568 16 6 0.0770 3.4164 2.5762 17 6 0.8388 3.5456 3.7244 18 6 0.0807 4.3443 4.5836 19 7 -1.0342 4.6485 3.9696 20 7 -1.0676 4.1292 2.7953 21 6 -2.1670 4.2758 1.8382 22 6 -2.7245 5.7066 1.7548 23 6 -4.1234 5.0702 1.6626 24 6 -3.5349 3.8573 2.4027 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8295 0.3130 -3.1149 31 1 2.2660 2.1252 1.9978 32 1 1.8126 3.1194 3.9155 33 1 0.3643 4.6556 5.5781 34 1 -1.9432 3.8370 0.8659 35 1 -2.5689 6.2895 2.6626 36 1 -2.4260 6.2395 0.8520 37 1 -4.4349 4.8497 0.6416 38 1 -4.8856 5.6016 2.2324 39 1 -3.8897 2.8994 2.0222 40 1 -3.6014 3.9337 3.4879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = 53.421505 kcal Electronic energy + Delta-G solvation = -21951.124981 eV Core-core repulsion = 18768.115921 eV Total energy + Delta-G solvation = -3183.009060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.35814 -38.84280 -38.45345 -35.12819 -32.60326 -31.58922 -31.40879 -30.03816 -27.01807 -25.82034 -25.44538 -23.49879 -22.51698 -21.61676 -20.24831 -19.43987 -19.09429 -18.02842 -16.38651 -15.76110 -15.67549 -15.45176 -15.28505 -14.53022 -14.36986 -13.91629 -13.64654 -13.22011 -12.72598 -12.65926 -12.63606 -12.32661 -12.05181 -11.54640 -11.38267 -11.30080 -11.05995 -10.86322 -10.80407 -10.70312 -10.49714 -10.35208 -10.23457 -9.71190 -9.20709 -9.13078 -8.92714 -8.77764 -8.54826 -7.93345 -6.18456 -4.25435 1.61880 2.62656 2.81168 3.22696 3.30278 3.32103 3.78748 3.98058 4.29204 4.34150 4.44108 4.69011 4.77760 4.95378 5.15227 5.20817 5.34031 5.51497 5.61188 5.61995 5.73295 5.79877 5.81392 5.88472 5.97980 6.28763 6.32903 6.38647 6.57833 6.70501 6.96485 6.99821 7.11609 7.25286 7.33463 7.54519 7.66108 7.78265 8.02117 8.27166 8.55567 8.70966 8.97472 9.40953 10.89434 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025026 B = 0.004599 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.567005 B = 6086.639580 C = 6604.682147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.271 3.729 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.687 5.687 14 C 0.574 3.426 15 O -0.549 6.549 16 C -0.023 4.023 17 C -0.201 4.201 18 C -0.009 4.009 19 N -0.288 5.288 20 N -0.248 5.248 21 C 0.112 3.888 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.141 4.141 25 H 0.022 0.978 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.265 0.735 31 H 0.392 0.608 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.252 6.154 9.940 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.170 3.830 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.334 5.334 14 C 0.358 3.642 15 O -0.429 6.429 16 C -0.152 4.152 17 C -0.229 4.229 18 C -0.185 4.185 19 N -0.120 5.120 20 N -0.035 5.035 21 C 0.011 3.989 22 C -0.180 4.180 23 C -0.174 4.174 24 C -0.179 4.179 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.225 0.775 32 H 0.175 0.825 33 H 0.198 0.802 34 H 0.173 0.827 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.888 6.597 9.077 15.635 hybrid contribution 2.199 -0.607 0.278 2.298 sum -8.689 5.991 9.355 14.103 Atomic orbital electron populations 1.21874 0.97980 0.98091 1.01589 1.21866 0.93009 0.99638 1.01496 1.18889 0.94495 0.89073 0.80544 0.92598 1.21189 0.90373 1.43898 1.02106 0.91917 1.24878 0.98609 0.94936 0.95037 1.69963 1.35442 1.42953 1.03391 0.86461 0.84846 0.78475 0.77518 1.20517 1.21102 1.19756 1.46286 1.13648 1.54698 1.18771 1.16932 0.83520 0.79453 0.84332 1.90697 1.49324 1.61882 1.40964 1.21928 0.90624 1.03809 0.98796 1.22248 1.01954 1.05271 0.93472 1.23464 0.91701 1.02136 1.01193 1.72995 1.23656 1.20650 0.94678 1.45732 1.13907 1.33459 1.10417 1.23847 0.82784 0.99302 0.92917 1.23369 0.95689 0.95349 1.03558 1.22708 0.96405 0.96995 1.01271 1.23330 0.93809 0.99332 1.01450 0.95889 0.92976 0.93899 0.94645 0.89771 0.92520 0.77484 0.82453 0.80155 0.82663 0.88625 0.90458 0.89429 0.90446 0.90358 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.46 37.16 0.31 -2.67 16 2 C -0.12 -2.84 5.49 -26.73 -0.15 -2.99 16 3 C 0.27 6.61 2.11 -69.08 -0.15 6.46 16 4 H 0.06 1.58 7.63 -51.93 -0.40 1.18 16 5 C -0.54 -13.81 8.67 -34.44 -0.30 -14.10 16 6 H 0.06 1.54 7.73 -52.49 -0.41 1.14 16 7 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 8 N -0.88 -24.30 11.98 55.43 0.66 -23.64 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.69 -14.01 5.01 -56.09 -0.28 -14.29 16 14 C 0.57 11.45 6.53 -12.64 -0.08 11.36 16 15 O -0.55 -12.05 11.26 5.25 0.06 -11.99 16 16 C -0.02 -0.39 6.96 -82.06 -0.57 -0.96 16 17 C -0.20 -2.91 10.50 -38.99 -0.41 -3.32 16 18 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 19 N -0.29 -4.36 11.14 30.59 0.34 -4.02 16 20 N -0.25 -3.99 3.46 -49.91 -0.17 -4.16 16 21 C 0.11 1.60 4.42 -67.12 -0.30 1.31 16 22 C -0.14 -1.65 7.76 -25.83 -0.20 -1.85 16 23 C -0.14 -1.31 8.09 -25.82 -0.21 -1.52 16 24 C -0.14 -1.66 7.80 -25.92 -0.20 -1.86 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.19 7.78 -51.93 -0.40 0.79 16 27 H 0.04 0.91 5.54 -51.93 -0.29 0.63 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 2.17 6.65 -51.93 -0.35 1.83 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 7.02 7.56 -40.82 -0.31 6.71 16 32 H 0.16 1.90 7.58 -52.48 -0.40 1.50 16 33 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.16 2.52 5.69 -51.93 -0.30 2.23 16 35 H 0.10 1.15 7.75 -51.93 -0.40 0.75 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -29.19 324.91 -7.82 -37.00 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.75 Total: 9.74 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.55 Total: -8.75 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.55 Total: -46.10 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.06 Total: -11.99 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.19 -7.82 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.426 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds