Wall clock time and date at job start Mon Mar 30 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 H 1.08997 * 109.47380 * 304.82519 * 3 2 1 5 5 C 1.50693 * 109.47192 * 184.81778 * 3 2 1 6 6 H 1.08002 * 120.00328 * 245.31290 * 5 3 2 7 7 C 1.37878 * 120.00041 * 65.30864 * 5 3 2 8 8 N 1.31519 * 119.99870 * 6.07336 * 7 5 3 9 9 Si 1.86797 * 120.00159 * 186.06706 * 7 5 3 10 10 H 1.48505 * 109.46855 * 94.99871 * 9 7 5 11 11 H 1.48498 * 109.47270 * 214.99728 * 9 7 5 12 12 H 1.48498 * 109.47246 * 334.99887 * 9 7 5 13 13 N 1.46509 * 109.46695 * 64.81990 * 3 2 1 14 14 C 1.34773 * 120.00030 * 275.00071 * 13 3 2 15 15 O 1.21633 * 120.00147 * 4.82182 * 14 13 3 16 16 C 1.47156 * 119.99965 * 184.82965 * 14 13 3 17 17 C 1.38402 * 126.88786 * 354.82294 * 16 14 13 18 18 C 1.39673 * 105.36591 * 180.02562 * 17 16 14 19 19 N 1.30863 * 107.85934 * 0.02562 * 18 17 16 20 20 N 1.28444 * 110.92708 * 359.70935 * 19 18 17 21 21 C 1.46504 * 125.19408 * 180.28658 * 20 19 18 22 22 C 1.53779 * 113.61223 * 42.95565 * 21 20 19 23 23 C 1.53960 * 87.01942 * 220.04966 * 22 21 20 24 24 C 1.53782 * 87.10755 * 25.36802 * 23 22 21 25 25 H 1.08995 * 109.47299 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47037 * 59.99722 * 1 2 3 27 27 H 1.08997 * 109.47111 * 299.99936 * 1 2 3 28 28 H 1.08992 * 109.46941 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.46756 * 240.00385 * 2 1 3 30 30 H 0.96996 * 120.00136 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99640 * 95.00040 * 13 3 2 32 32 H 1.08003 * 127.31547 * 0.02562 * 17 16 14 33 33 H 1.07997 * 126.06857 * 180.02562 * 18 17 16 34 34 H 1.08994 * 112.85131 * 174.16207 * 21 20 19 35 35 H 1.08998 * 113.61801 * 334.57344 * 22 21 20 36 36 H 1.09005 * 113.60953 * 105.47909 * 22 21 20 37 37 H 1.08999 * 113.53918 * 270.81336 * 23 22 21 38 38 H 1.08996 * 113.73812 * 139.94266 * 23 22 21 39 39 H 1.09005 * 113.61373 * 220.08715 * 24 23 22 40 40 H 1.09000 * 113.61511 * 89.18701 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6079 1.9807 -0.8436 5 6 3.5422 1.4442 -0.1193 6 1 4.1483 1.8115 0.6957 7 6 4.1430 0.9767 -1.2689 8 7 3.4069 0.6415 -2.3060 9 14 6.0024 0.8197 -1.3536 10 1 6.3983 -0.5687 -1.0057 11 1 6.4638 1.1360 -2.7292 12 1 6.6235 1.7669 -0.3932 13 7 1.6487 2.0988 1.2501 14 6 0.4311 2.6657 1.3610 15 8 -0.3751 2.5571 0.4568 16 6 0.0770 3.4164 2.5762 17 6 0.8388 3.5456 3.7244 18 6 0.0807 4.3443 4.5836 19 7 -1.0342 4.6485 3.9696 20 7 -1.0676 4.1292 2.7953 21 6 -2.1670 4.2758 1.8382 22 6 -2.7245 5.7066 1.7548 23 6 -4.1234 5.0702 1.6626 24 6 -3.5349 3.8573 2.4027 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8295 0.3130 -3.1149 31 1 2.2660 2.1252 1.9978 32 1 1.8126 3.1194 3.9155 33 1 0.3643 4.6556 5.5781 34 1 -1.9432 3.8370 0.8659 35 1 -2.5689 6.2895 2.6626 36 1 -2.4260 6.2395 0.8520 37 1 -4.4349 4.8497 0.6416 38 1 -4.8856 5.6016 2.2324 39 1 -3.8897 2.8994 2.0222 40 1 -3.6014 3.9337 3.4879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:24 Heat of formation + Delta-G solvation = 35.827815 kcal Electronic energy + Delta-G solvation = -21951.887901 eV Core-core repulsion = 18768.115921 eV Total energy + Delta-G solvation = -3183.771980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.52707 -40.48229 -39.42112 -36.94794 -34.41543 -33.22522 -32.65983 -31.45191 -28.91199 -26.75494 -26.48203 -25.27548 -24.06800 -22.77146 -21.70565 -21.11760 -20.26545 -19.41224 -18.04960 -17.32567 -17.01796 -16.89303 -16.46249 -16.13839 -15.95389 -15.25666 -14.96037 -14.61954 -14.34735 -13.93356 -13.71429 -13.58879 -13.47539 -13.26423 -13.24349 -12.91569 -12.64104 -12.23199 -12.19457 -12.11688 -11.87130 -11.63746 -11.61702 -11.49552 -11.09162 -10.77540 -10.54971 -10.17912 -9.92224 -9.66799 -8.18912 -6.33103 0.31509 1.44104 1.46083 1.48295 1.57537 1.71359 2.29523 2.37671 2.57451 3.13551 3.32293 3.49344 3.74045 3.76283 3.79282 3.98819 4.22472 4.47408 4.53068 4.54227 4.62895 4.67587 4.70962 4.78153 4.86881 4.89241 4.96224 4.98399 5.05764 5.23234 5.33681 5.41027 5.48257 5.58951 5.64075 5.74500 5.83202 5.88122 6.06012 6.73941 6.83480 7.15389 7.29326 7.44499 8.89472 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025026 B = 0.004599 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.567005 B = 6086.639580 C = 6604.682147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C 0.281 3.719 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.685 5.685 14 C 0.573 3.427 15 O -0.576 6.576 16 C -0.059 4.059 17 C -0.186 4.186 18 C -0.005 4.005 19 N -0.292 5.292 20 N -0.253 5.253 21 C 0.090 3.910 22 C -0.135 4.135 23 C -0.119 4.119 24 C -0.135 4.135 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.182 0.818 33 H 0.222 0.778 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 6.781 12.257 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C 0.178 3.822 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.186 1.186 13 N -0.333 5.333 14 C 0.359 3.641 15 O -0.458 6.458 16 C -0.188 4.188 17 C -0.215 4.215 18 C -0.180 4.180 19 N -0.124 5.124 20 N -0.040 5.040 21 C -0.010 4.010 22 C -0.173 4.173 23 C -0.156 4.156 24 C -0.173 4.173 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.199 0.801 33 H 0.238 0.762 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.547 7.236 11.427 17.151 hybrid contribution 2.054 -0.755 -0.402 2.225 sum -8.493 6.480 11.025 15.351 Atomic orbital electron populations 1.21703 0.96693 0.99140 1.00531 1.21722 0.94053 0.98889 1.00634 1.18464 0.93896 0.89127 0.80701 0.97550 1.21543 0.91113 1.43581 1.02464 0.90823 1.25733 1.03155 0.94577 0.94660 1.70107 1.37378 1.43925 1.03981 0.85399 0.79269 0.78739 0.77356 1.19857 1.21413 1.18614 1.45984 1.14376 1.55012 1.17965 1.17269 0.82806 0.78984 0.85001 1.90686 1.50071 1.62718 1.42346 1.21672 0.92522 1.05839 0.98721 1.22643 1.02444 1.04182 0.92246 1.24156 0.90549 1.00916 1.02367 1.73009 1.24535 1.20558 0.94328 1.45915 1.13855 1.33386 1.10887 1.23996 0.83498 1.01415 0.92087 1.23350 0.96667 0.93809 1.03519 1.22691 0.95737 0.95380 1.01839 1.23306 0.92314 1.00255 1.01468 0.93643 0.95183 0.93752 0.93428 0.92439 0.92589 0.75913 0.80059 0.76164 0.85349 0.88686 0.90382 0.88554 0.88180 0.90546 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.46 71.98 0.61 -4.83 16 2 C -0.11 -5.45 5.49 30.60 0.17 -5.28 16 3 C 0.28 14.08 2.11 44.24 0.09 14.18 16 4 H 0.01 0.39 7.63 -2.39 -0.02 0.37 16 5 C -0.55 -28.37 8.67 25.60 0.22 -28.15 16 6 H 0.07 3.56 7.73 -2.91 -0.02 3.53 16 7 C 0.02 1.02 5.22 84.65 0.44 1.46 16 8 N -0.92 -51.94 11.98 21.45 0.26 -51.68 16 9 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 13 N -0.68 -28.20 5.01 -449.63 -2.25 -30.45 16 14 C 0.57 23.37 6.53 86.59 0.57 23.94 16 15 O -0.58 -26.56 11.26 -4.14 -0.05 -26.60 16 16 C -0.06 -2.02 6.96 40.78 0.28 -1.74 16 17 C -0.19 -4.98 10.50 22.66 0.24 -4.74 16 18 C 0.00 -0.11 12.03 85.18 1.02 0.92 16 19 N -0.29 -8.28 11.14 -57.14 -0.64 -8.92 16 20 N -0.25 -8.00 3.46 -311.81 -1.08 -9.08 16 21 C 0.09 2.61 4.42 45.52 0.20 2.81 16 22 C -0.14 -3.04 7.76 31.18 0.24 -2.80 16 23 C -0.12 -2.10 8.09 31.18 0.25 -1.85 16 24 C -0.14 -3.08 7.80 31.12 0.24 -2.84 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.03 1.42 7.78 -2.39 -0.02 1.40 16 27 H 0.04 1.92 5.54 -2.39 -0.01 1.91 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 3.06 6.65 -2.39 -0.02 3.04 16 30 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.41 14.20 7.56 -92.71 -0.70 13.50 16 32 H 0.18 3.81 7.58 -2.91 -0.02 3.78 16 33 H 0.22 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.13 4.41 5.69 -2.39 -0.01 4.39 16 35 H 0.09 2.15 7.75 -2.39 -0.02 2.13 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.09 2.09 8.03 -2.39 -0.02 2.07 16 Total: -1.00 -64.75 324.91 3.20 -61.55 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.35 Total: 30.73 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 4.58 Total: -8.92 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -3.71 Total: -100.13 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -64.75 3.20 -61.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.377 kcal (2) G-P(sol) polarization free energy of solvation -64.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds