Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47638 * 2 1 4 4 H 1.08999 * 109.47045 * 54.99670 * 3 2 1 5 5 C 1.50700 * 109.47661 * 175.00112 * 3 2 1 6 6 H 1.07996 * 120.00450 * 119.99817 * 5 3 2 7 7 C 1.37883 * 119.99496 * 300.00037 * 5 3 2 8 8 N 1.31506 * 120.00345 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99587 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47288 * 59.99684 * 9 7 5 11 11 H 1.48496 * 109.46925 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46939 * 299.99971 * 9 7 5 13 13 N 1.46499 * 109.47145 * 295.00317 * 3 2 1 14 14 C 1.34777 * 120.00195 * 84.99285 * 13 3 2 15 15 O 1.21603 * 119.99960 * 0.02562 * 14 13 3 16 16 C 1.47438 * 119.99783 * 180.27836 * 14 13 3 17 17 C 1.41288 * 126.41399 * 359.41693 * 16 14 13 18 18 N 1.30453 * 108.01781 * 179.82129 * 17 16 14 19 19 N 1.39936 * 108.89761 * 0.44168 * 18 17 16 20 20 C 1.46501 * 125.75226 * 179.73945 * 19 18 17 21 21 C 1.53777 * 113.61235 * 194.10951 * 20 19 18 22 22 C 1.53951 * 87.02159 * 220.04694 * 21 20 19 23 23 C 1.53782 * 87.11017 * 25.36543 * 22 21 20 24 24 C 1.34254 * 108.49204 * 359.71528 * 19 18 17 25 25 H 1.08993 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46942 * 300.00584 * 1 2 3 27 27 H 1.08999 * 109.46845 * 60.00061 * 1 2 3 28 28 H 1.08996 * 109.47251 * 239.99744 * 2 1 3 29 29 H 1.09008 * 109.47049 * 120.00022 * 2 1 3 30 30 H 0.97002 * 120.00466 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00069 * 265.00013 * 13 3 2 32 32 H 1.07996 * 125.99246 * 359.97438 * 17 16 14 33 33 H 1.09001 * 112.84968 * 325.30734 * 20 19 18 34 34 H 1.09003 * 113.61601 * 334.56839 * 21 20 19 35 35 H 1.09007 * 113.61166 * 105.46824 * 21 20 19 36 36 H 1.09001 * 113.54069 * 270.81493 * 22 21 20 37 37 H 1.09001 * 113.74408 * 139.94740 * 22 21 20 38 38 H 1.08996 * 113.61594 * 220.09310 * 23 22 21 39 39 H 1.09003 * 113.61777 * 89.18682 * 23 22 21 40 40 H 1.08003 * 126.29264 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3807 11 1 6.3978 0.2155 2.6498 12 1 6.5966 0.1450 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 6 0.0430 3.3182 -2.6288 17 6 0.8352 3.4391 -3.7924 18 7 0.1368 4.0756 -4.6918 19 7 -1.1133 4.3966 -4.1512 20 6 -2.1852 5.1175 -4.8423 21 6 -3.2941 5.6208 -3.9033 22 6 -4.2963 5.2087 -4.9968 23 6 -3.2422 4.1945 -5.4715 24 6 -1.1650 3.9322 -2.8926 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8293 -0.0611 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 1.8416 3.0673 -3.9165 33 1 -1.8106 5.8809 -5.5243 34 1 -3.3859 5.0401 -2.9854 35 1 -3.2597 6.6955 -3.7238 36 1 -4.4999 5.9979 -5.7205 37 1 -5.2037 4.7460 -4.6086 38 1 -3.1660 4.1193 -6.5562 39 1 -3.3198 3.2231 -4.9832 40 1 -1.9985 4.0220 -2.2118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935401550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = 53.232074 kcal Electronic energy + Delta-G solvation = -21348.441291 eV Core-core repulsion = 18165.424016 eV Total energy + Delta-G solvation = -3183.017275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39247 -38.97841 -38.19282 -34.90194 -32.43296 -31.72972 -30.84431 -29.85586 -27.02036 -26.18821 -25.54139 -23.25914 -22.26500 -21.28024 -20.12060 -19.33141 -19.17821 -18.08992 -16.52586 -16.09317 -15.32483 -15.22840 -15.04693 -14.54488 -14.23242 -14.12247 -13.52120 -13.14004 -12.87799 -12.67882 -12.58993 -12.40049 -11.90777 -11.69315 -11.42517 -11.18547 -11.09551 -11.05703 -10.93869 -10.76945 -10.73358 -10.26110 -10.09426 -9.55417 -9.45094 -9.00187 -8.91493 -8.45450 -8.42921 -7.67497 -6.06456 -4.15381 1.75701 2.36252 2.47603 3.29727 3.34767 3.36262 3.84426 4.04803 4.21022 4.25495 4.33043 4.36455 4.50538 4.79435 4.88179 5.14958 5.20463 5.23949 5.24891 5.41375 5.43570 5.47771 5.60377 5.66323 5.87968 6.09626 6.46905 6.54765 6.58901 6.75077 6.93568 7.13709 7.28560 7.45805 7.57263 7.67146 7.70237 7.84095 7.99082 8.25598 8.79834 8.87104 9.28461 9.52644 10.98886 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034127 B = 0.003697 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.274439 B = 7572.073137 C = 8020.848120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.579 3.421 15 O -0.559 6.559 16 C -0.277 4.277 17 C 0.078 3.922 18 N -0.305 5.305 19 N -0.357 5.357 20 C 0.134 3.866 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.148 4.148 24 C 0.114 3.886 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.189 0.811 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 8.240 -14.096 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.364 3.636 15 O -0.440 6.440 16 C -0.292 4.292 17 C -0.109 4.109 18 N -0.124 5.124 19 N -0.136 5.136 20 C 0.033 3.967 21 C -0.187 4.187 22 C -0.175 4.175 23 C -0.186 4.186 24 C -0.036 4.036 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.206 0.794 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.682 8.633 -14.482 21.098 hybrid contribution 1.398 -0.369 0.541 1.544 sum -11.284 8.264 -13.941 19.748 Atomic orbital electron populations 1.21836 0.98398 0.97881 1.01312 1.21930 0.92620 0.99875 1.02186 1.18754 0.94042 0.89117 0.81036 0.93290 1.21221 0.90823 1.38900 1.06234 0.92130 1.24876 0.98492 0.94875 0.95413 1.69884 1.35146 1.37668 1.09342 0.86533 0.85029 0.78279 0.77392 1.20213 1.21205 1.20183 1.46281 1.14416 1.55948 1.18395 1.17190 0.82639 0.78302 0.85442 1.90723 1.51907 1.61175 1.40200 1.20677 0.96208 1.14238 0.98048 1.24111 0.99767 0.96500 0.90516 1.77091 0.91491 1.21059 1.22796 1.48500 1.12156 1.43036 1.09946 1.23041 0.82858 0.94930 0.95911 1.23487 0.93904 1.02784 0.98508 1.22730 0.97360 0.99164 0.98213 1.23452 0.94473 0.98799 1.01925 1.22786 0.99175 0.94696 0.86949 0.96028 0.93192 0.94139 0.95074 0.88373 0.92576 0.78148 0.79437 0.85946 0.88559 0.89715 0.89362 0.90050 0.90191 0.89126 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.93 2.24 -69.08 -0.15 6.78 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.70 -14.98 5.01 -56.01 -0.28 -15.26 16 14 C 0.58 11.99 6.38 -12.51 -0.08 11.91 16 15 O -0.56 -13.28 14.03 5.27 0.07 -13.21 16 16 C -0.28 -4.67 6.13 -105.06 -0.64 -5.31 16 17 C 0.08 1.17 11.50 -16.98 -0.20 0.97 16 18 N -0.31 -4.51 12.50 30.86 0.39 -4.12 16 19 N -0.36 -4.59 3.77 -53.52 -0.20 -4.79 16 20 C 0.13 1.19 5.01 -67.12 -0.34 0.86 16 21 C -0.15 -1.01 7.45 -25.83 -0.19 -1.20 16 22 C -0.14 -0.75 8.09 -25.83 -0.21 -0.95 16 23 C -0.15 -1.10 7.88 -25.92 -0.20 -1.31 16 24 C 0.11 1.63 10.50 -16.56 -0.17 1.46 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 27 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.66 5.95 -51.92 -0.31 2.36 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.39 7.17 7.49 -40.82 -0.31 6.87 16 32 H 0.19 2.31 7.50 -52.49 -0.39 1.92 16 33 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.70 6.29 -51.93 -0.33 0.38 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.18 2.26 6.66 -52.48 -0.35 1.91 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -31.90 326.78 -7.61 -39.51 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.70 Total: 7.16 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.41 Total: -5.67 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.53 Total: -48.43 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.90 -7.61 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.741 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds