Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46905 * 109.47434 * 333.05040 * 3 2 1 5 5 C 1.47444 * 110.99642 * 69.87465 * 4 3 2 6 6 C 1.54311 * 107.23338 * 236.74509 * 5 4 3 7 7 C 1.55141 * 103.17661 * 337.62893 * 6 5 4 8 8 C 1.47843 * 110.99789 * 309.03468 * 4 3 2 9 9 H 1.08998 * 110.37554 * 27.53647 * 8 4 3 10 10 C 1.50695 * 110.37453 * 265.29973 * 8 4 3 11 11 O 1.21285 * 119.99932 * 0.02562 * 10 8 4 12 12 N 1.34773 * 120.00236 * 180.02562 * 10 8 4 13 13 C 1.46499 * 120.00319 * 180.02562 * 12 10 8 14 14 C 1.53938 * 113.74416 * 253.74226 * 13 12 10 15 15 N 1.47811 * 86.04008 * 222.08307 * 14 13 12 16 16 C 1.36936 * 134.45870 * 204.64981 * 15 14 13 17 17 H 1.08003 * 120.00246 * 173.34353 * 16 15 14 18 18 C 1.38813 * 120.00044 * 353.33271 * 16 15 14 19 19 N 1.31622 * 120.00006 * 5.07473 * 18 16 15 20 20 Si 1.86795 * 120.00235 * 185.06493 * 18 16 15 21 21 H 1.48505 * 109.47012 * 94.99426 * 20 18 16 22 22 H 1.48500 * 109.47544 * 214.99504 * 20 18 16 23 23 H 1.48501 * 109.47158 * 334.99537 * 20 18 16 24 24 C 1.47582 * 91.04875 * 24.54293 * 15 14 13 25 25 H 4.40890 * 5.52114 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46893 * 213.05235 * 3 2 1 27 27 H 1.09002 * 109.47374 * 93.05850 * 3 2 1 28 28 H 1.08999 * 109.88699 * 117.33460 * 5 4 3 29 29 H 1.09002 * 109.88714 * 356.15026 * 5 4 3 30 30 H 1.08994 * 110.70745 * 96.10141 * 6 5 4 31 31 H 1.09006 * 110.70385 * 219.15853 * 6 5 4 32 32 H 1.08997 * 110.99081 * 153.83363 * 7 6 5 33 33 H 1.09004 * 110.99194 * 277.65069 * 7 6 5 34 34 H 0.97001 * 120.00161 * 359.97438 * 12 10 8 35 35 H 1.09002 * 112.94203 * 25.33310 * 13 12 10 36 36 H 1.09007 * 113.76982 * 336.34549 * 14 13 12 37 37 H 1.09003 * 113.77805 * 107.74128 * 14 13 12 38 38 H 0.96995 * 120.00177 * 179.97438 * 19 18 16 39 39 H 1.08993 * 113.77259 * 221.15282 * 24 15 14 40 40 H 1.09004 * 113.86662 * 89.76904 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.2337 0.6277 5 6 2.8664 -2.4044 -0.2271 6 6 2.0375 -3.4007 0.6104 7 6 2.3672 -2.9948 2.0710 8 6 2.4935 -1.4517 1.9411 9 1 1.5075 -0.9875 1.9628 10 6 3.3568 -0.8993 3.0459 11 8 4.4146 -0.3685 2.7810 12 7 2.9534 -0.9952 4.3282 13 6 3.7924 -0.4577 5.4022 14 6 4.5074 -1.5402 6.2309 15 7 4.1513 -0.7260 7.4121 16 6 4.6697 -0.5854 8.6716 17 1 4.2800 0.1731 9.3345 18 6 5.6961 -1.4177 9.0967 19 7 6.2389 -2.2744 8.2577 20 14 6.3072 -1.3218 10.8593 21 1 5.6136 -2.3468 11.6801 22 1 7.7709 -1.5705 10.8900 23 1 6.0228 0.0280 11.4090 24 6 3.0149 -0.1239 6.6882 25 1 -1.0498 -0.0002 0.0003 26 1 3.0089 0.8622 0.5605 27 1 3.0093 0.0557 -1.0262 28 1 3.8058 -2.8665 -0.5304 29 1 2.3002 -2.0984 -1.1069 30 1 0.9731 -3.2819 0.4083 31 1 2.3535 -4.4253 0.4143 32 1 1.5552 -3.2680 2.7449 33 1 3.3084 -3.4379 2.3964 34 1 2.1072 -1.4194 4.5401 35 1 4.4503 0.3439 5.0666 36 1 4.0146 -2.5122 6.2026 37 1 5.5796 -1.6001 6.0442 38 1 6.9563 -2.8557 8.5546 39 1 2.8976 0.9451 6.8657 40 1 2.0817 -0.6774 6.7935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030462263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = 90.158446 kcal Electronic energy + Delta-G solvation = -21432.142909 eV Core-core repulsion = 18250.726882 eV Total energy + Delta-G solvation = -3181.416027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21692 -38.57393 -37.10413 -34.13022 -33.38357 -31.85361 -31.27904 -29.60370 -27.28412 -26.29910 -24.80015 -23.60354 -22.04246 -21.29946 -19.91541 -19.52267 -18.30359 -17.16430 -16.73766 -16.28513 -15.61205 -15.28826 -14.87661 -14.54799 -14.34623 -13.97542 -13.82099 -13.37824 -13.20981 -12.73152 -12.61230 -11.95565 -11.83742 -11.63427 -11.43771 -11.42363 -11.34595 -11.01953 -10.86407 -10.76415 -10.65527 -10.40762 -10.31195 -10.01528 -9.52052 -9.37094 -8.78980 -8.58834 -8.34745 -6.89218 -5.77523 -3.10541 2.46735 2.57488 3.02414 3.31605 3.40536 3.45445 3.47697 3.99064 4.19118 4.39639 4.47872 4.50990 4.76636 5.04111 5.06865 5.18131 5.20951 5.33896 5.43563 5.48468 5.57946 5.62237 5.63044 5.66431 5.69760 5.84224 6.03818 6.04795 6.24168 6.45282 6.58199 6.65777 6.78853 6.84072 7.26247 7.32637 7.40728 7.58729 7.96528 7.99224 8.69594 9.03661 9.69917 10.57911 11.39744 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035608 B = 0.003542 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.142021 B = 7903.794527 C = 8167.230295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.215 4.215 3 C 0.153 3.847 4 N -0.492 5.492 5 C 0.041 3.959 6 C -0.140 4.140 7 C -0.118 4.118 8 C 0.049 3.951 9 H 0.084 0.916 10 C 0.519 3.481 11 O -0.521 6.521 12 N -0.718 5.718 13 C 0.094 3.906 14 C 0.158 3.842 15 N -0.607 5.607 16 C -0.227 4.227 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.112 3.888 25 H 0.215 0.785 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.394 0.606 35 H 0.109 0.891 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 -0.414 -17.768 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.216 4.216 3 C 0.026 3.974 4 N -0.214 5.214 5 C -0.086 4.086 6 C -0.178 4.178 7 C -0.157 4.157 8 C -0.063 4.063 9 H 0.102 0.898 10 C 0.303 3.697 11 O -0.396 6.396 12 N -0.370 5.370 13 C -0.011 4.011 14 C 0.031 3.969 15 N -0.334 5.334 16 C -0.354 4.354 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.562 5.562 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.015 4.015 25 H 0.232 0.768 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.227 0.773 35 H 0.127 0.873 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.186 -0.028 -17.627 20.876 hybrid contribution -1.301 -0.384 1.015 1.695 sum -12.487 -0.412 -16.611 20.785 Atomic orbital electron populations 1.25020 0.96018 0.99879 1.01123 1.24422 0.95924 1.01043 1.00256 1.19732 0.81803 0.94671 1.01243 1.63466 1.54778 1.01834 1.01315 1.22902 0.99844 0.90603 0.95276 1.22762 1.00070 1.00065 0.94897 1.22769 1.03330 0.92400 0.97183 1.22736 0.96453 0.97300 0.89815 0.89799 1.20211 0.86752 0.79543 0.83223 1.90689 1.22898 1.42888 1.83098 1.46111 1.24151 1.60667 1.06042 1.23857 0.93783 0.99388 0.84089 1.22645 0.99684 0.91899 0.82652 1.45708 1.28606 1.47797 1.11269 1.18989 1.14440 1.13992 0.88016 0.90053 1.24849 0.99119 0.98052 0.98189 1.69852 1.27378 1.25443 1.33548 0.86104 0.77898 0.77613 0.84183 1.21603 1.21630 1.20486 1.22866 0.92038 0.97408 0.89190 0.76795 0.87826 0.88190 0.89804 0.92299 0.91391 0.90261 0.89915 0.89588 0.77326 0.87306 0.95251 0.90975 0.93532 0.93395 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 19.17 29.55 0.57 -1.21 16 2 C -0.21 -2.20 10.59 -37.12 -0.39 -2.60 16 3 C 0.15 1.64 5.79 -6.61 -0.04 1.61 16 4 N -0.49 -6.02 4.59 -227.93 -1.05 -7.06 16 5 C 0.04 0.40 6.46 -2.84 -0.02 0.38 16 6 C -0.14 -1.19 6.93 -24.91 -0.17 -1.36 16 7 C -0.12 -1.23 6.51 -24.34 -0.16 -1.39 16 8 C 0.05 0.60 2.59 -67.09 -0.17 0.43 16 9 H 0.08 0.96 6.09 -51.93 -0.32 0.65 16 10 C 0.52 8.46 7.20 -10.99 -0.08 8.38 16 11 O -0.52 -10.73 16.11 5.55 0.09 -10.64 16 12 N -0.72 -11.30 5.35 -55.35 -0.30 -11.59 16 13 C 0.09 1.86 4.40 -70.15 -0.31 1.55 16 14 C 0.16 3.83 7.24 -2.84 -0.02 3.81 16 15 N -0.61 -15.78 3.70 -177.88 -0.66 -16.44 16 16 C -0.23 -6.44 10.70 -15.06 -0.16 -6.60 16 17 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 18 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -27.66 11.51 55.49 0.64 -27.02 16 20 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.11 2.27 8.69 -2.97 -0.03 2.24 16 25 H 0.22 1.19 7.80 -54.10 -0.42 0.77 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.10 0.88 8.04 -51.93 -0.42 0.46 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.50 7.20 -51.93 -0.37 0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 34 H 0.39 5.03 8.71 -40.82 -0.36 4.67 16 35 H 0.11 2.36 7.51 -51.93 -0.39 1.97 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.99 7.37 -51.93 -0.38 1.61 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -34.19 335.92 -8.32 -42.50 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.00 Total: 2.93 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.08 Total: 4.99 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.36 Total: -62.12 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.19 -8.32 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030462263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.663 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds