Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 N 1.46505 * 109.47430 * 239.99795 * 2 1 3 5 5 C 1.35529 * 125.67632 * 54.93183 * 4 2 1 6 6 C 1.35448 * 108.87159 * 179.97438 * 5 4 2 7 7 C 1.39836 * 107.86698 * 359.97438 * 6 5 4 8 8 C 1.37645 * 125.67675 * 234.62399 * 4 2 1 9 9 C 1.46677 * 126.23590 * 0.02562 * 8 4 2 10 10 O 1.21692 * 120.00163 * 5.04319 * 9 8 4 11 11 N 1.34781 * 119.99784 * 185.04981 * 9 8 4 12 12 C 1.46502 * 119.99648 * 185.10785 * 11 9 8 13 13 C 1.53948 * 113.74333 * 253.74094 * 12 11 9 14 14 N 1.47816 * 86.03592 * 222.08497 * 13 12 11 15 15 C 1.36933 * 134.45495 * 204.64312 * 14 13 12 16 16 H 1.08004 * 120.00068 * 179.86354 * 15 14 13 17 17 C 1.38810 * 120.00197 * 359.86669 * 15 14 13 18 18 N 1.31613 * 119.99930 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47478 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47099 * 120.00259 * 19 17 15 22 22 H 1.48503 * 109.47082 * 239.99809 * 19 17 15 23 23 C 1.47587 * 91.04975 * 24.54599 * 14 13 12 24 24 H 1.09010 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47162 * 60.00828 * 1 2 3 26 26 H 1.09000 * 109.47429 * 299.99827 * 1 2 3 27 27 H 1.09003 * 109.47300 * 120.00082 * 2 1 3 28 28 H 1.09001 * 109.47288 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47032 * 300.00246 * 3 2 1 30 30 H 1.09000 * 109.46760 * 59.99763 * 3 2 1 31 31 H 1.08006 * 125.56139 * 359.95559 * 5 4 2 32 32 H 1.08000 * 126.06505 * 180.02562 * 6 5 4 33 33 H 1.07996 * 126.45963 * 179.97438 * 7 6 5 34 34 H 0.96990 * 120.00564 * 5.10953 * 11 9 8 35 35 H 1.09002 * 112.94443 * 25.32994 * 12 11 9 36 36 H 1.08998 * 113.76668 * 336.35133 * 13 12 11 37 37 H 1.09003 * 113.76808 * 107.74816 * 13 12 11 38 38 H 0.96999 * 119.99919 * 180.02562 * 18 17 15 39 39 H 1.08992 * 113.76770 * 221.14822 * 23 14 13 40 40 H 1.08997 * 113.76760 * 89.75801 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.6856 -0.3884 -2.4747 6 6 2.3304 -1.2393 -3.3082 7 6 3.0971 -2.1080 -2.5253 8 6 2.8963 -1.7507 -1.2088 9 6 3.5051 -2.3863 -0.0355 10 8 3.1757 -2.0401 1.0837 11 7 4.4296 -3.3538 -0.1968 12 6 4.9555 -4.0663 0.9702 13 6 6.3929 -3.6633 1.3465 14 7 6.6308 -5.1058 1.5646 15 6 7.5132 -5.8285 2.3222 16 1 7.4792 -6.9079 2.3083 17 6 8.4515 -5.1738 3.1083 18 7 8.4926 -3.8585 3.1258 19 14 9.6548 -6.1598 4.1424 20 1 9.4021 -7.6101 3.9480 21 1 11.0438 -5.8396 3.7256 22 1 9.4757 -5.8133 5.5753 23 6 5.5342 -5.4541 0.6402 24 1 -0.3634 -1.0278 0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.0153 0.4019 -2.7792 32 1 2.2647 -1.2453 -4.3861 33 1 3.7297 -2.9064 -2.8842 34 1 4.7466 -3.5783 -1.0855 35 1 4.2652 -4.0679 1.8138 36 1 6.9631 -3.2445 0.5173 37 1 6.4577 -3.0640 2.2547 38 1 9.1484 -3.4010 3.6748 39 1 4.9148 -6.2818 0.9854 40 1 5.8516 -5.5625 -0.3969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031393679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = 66.001726 kcal Electronic energy + Delta-G solvation = -21353.663178 eV Core-core repulsion = 18171.199637 eV Total energy + Delta-G solvation = -3182.463541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45338 -39.10768 -37.34129 -35.55140 -33.48493 -31.84669 -29.87269 -29.28940 -27.52140 -27.26580 -24.82213 -23.78337 -22.58281 -21.81560 -20.30673 -19.77721 -18.88032 -17.53309 -16.77693 -15.90824 -15.39444 -15.29321 -14.87825 -14.80528 -14.07915 -14.02636 -13.89076 -13.75809 -12.88991 -12.68140 -12.63367 -12.44237 -12.34590 -12.17747 -11.87925 -11.50641 -11.44796 -11.43349 -11.17589 -10.87913 -10.78596 -10.43619 -10.01599 -9.58168 -9.49774 -8.81455 -8.75227 -8.53541 -8.11821 -6.91981 -5.77288 -3.11351 1.59522 2.67655 2.77133 3.39381 3.43958 3.47437 3.60736 3.62282 4.45926 4.49956 4.76421 4.87692 4.96580 5.02900 5.17522 5.25859 5.26968 5.37240 5.45352 5.48051 5.52554 5.58538 5.70488 5.84289 5.92942 5.99232 6.06056 6.21034 6.22730 6.42103 6.55775 6.74977 6.80694 7.04597 7.24435 7.25342 7.37233 7.56723 7.88994 7.96446 8.52372 9.02746 9.69132 10.55559 11.39505 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.003600 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.836434 B = 7776.189590 C = 8202.386514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.159 4.159 4 N -0.400 5.400 5 C 0.010 3.990 6 C -0.210 4.210 7 C -0.146 4.146 8 C -0.043 4.043 9 C 0.585 3.415 10 O -0.553 6.553 11 N -0.701 5.701 12 C 0.095 3.905 13 C 0.154 3.846 14 N -0.607 5.607 15 C -0.225 4.225 16 H 0.083 0.917 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.914 3.086 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.113 3.887 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.134 0.866 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.399 0.601 35 H 0.110 0.890 36 H 0.030 0.970 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.050 0.950 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 8.365 -11.838 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 C -0.217 4.217 4 N -0.073 5.073 5 C -0.125 4.125 6 C -0.234 4.234 7 C -0.172 4.172 8 C -0.157 4.157 9 C 0.372 3.628 10 O -0.433 6.433 11 N -0.351 5.351 12 C -0.010 4.010 13 C 0.028 3.972 14 N -0.334 5.334 15 C -0.353 4.353 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.216 1.216 23 C -0.014 4.014 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.152 0.848 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.234 0.766 35 H 0.128 0.872 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.566 8.697 -10.429 20.657 hybrid contribution 0.941 -0.496 -0.141 1.073 sum -14.625 8.201 -10.570 19.821 Atomic orbital electron populations 1.22127 0.93581 1.03027 1.02794 1.22000 0.95174 0.94289 0.88447 1.22143 1.02424 0.94417 1.02668 1.44188 1.32808 1.23945 1.06400 1.21834 1.04706 1.03167 0.82836 1.20759 1.03810 0.99767 0.99085 1.21338 1.03113 1.01925 0.90836 1.20246 1.03317 0.97143 0.95036 1.17048 0.79191 0.79632 0.86923 1.90705 1.63530 1.63358 1.25692 1.45830 1.41058 1.36944 1.11249 1.23939 0.96769 0.92665 0.87639 1.22716 0.87583 0.87774 0.99112 1.45729 1.37316 1.02476 1.47868 1.19034 1.08597 0.89927 1.17712 0.89967 1.24818 0.99384 0.95767 1.00344 1.69841 1.37521 1.06106 1.43004 0.86023 0.80749 0.78912 0.79910 1.20388 1.21706 1.21615 1.22875 0.89862 0.94421 0.94240 0.91787 0.92183 0.90564 0.84815 0.91670 0.92255 0.90615 0.82107 0.84355 0.83987 0.76637 0.87167 0.95272 0.90465 0.93583 0.93147 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.16 37.16 0.34 -1.05 16 2 C 0.10 1.17 3.48 -67.93 -0.24 0.93 16 3 C -0.16 -1.52 9.30 37.16 0.35 -1.18 16 4 N -0.40 -5.06 2.64 -105.81 -0.28 -5.33 16 5 C 0.01 0.10 10.33 -16.91 -0.17 -0.07 16 6 C -0.21 -2.26 10.81 -39.98 -0.43 -2.70 16 7 C -0.15 -1.78 10.35 -39.12 -0.40 -2.19 16 8 C -0.04 -0.63 6.89 -81.98 -0.56 -1.19 16 9 C 0.58 9.98 7.77 -12.85 -0.10 9.88 16 10 O -0.55 -11.03 14.03 5.20 0.07 -10.96 16 11 N -0.70 -11.42 5.35 -56.65 -0.30 -11.73 16 12 C 0.09 1.87 4.36 -70.14 -0.31 1.57 16 13 C 0.15 3.76 7.33 -2.83 -0.02 3.73 16 14 N -0.61 -15.71 3.70 -177.87 -0.66 -16.37 16 15 C -0.23 -6.36 10.70 -15.06 -0.16 -6.53 16 16 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.69 11.39 55.49 0.63 -27.06 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 C 0.11 2.27 8.69 -2.97 -0.03 2.24 16 24 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.13 1.94 5.34 -51.93 -0.28 1.66 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.48 8.01 -51.93 -0.42 0.06 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.16 1.20 7.91 -52.48 -0.42 0.78 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.14 1.44 7.49 -52.49 -0.39 1.05 16 34 H 0.40 5.41 7.66 -40.82 -0.31 5.10 16 35 H 0.11 2.34 7.57 -51.93 -0.39 1.95 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 2.13 7.16 -51.93 -0.37 1.76 16 38 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -33.29 332.66 -8.29 -41.57 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.91 Total: 4.43 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.84 Total: 3.19 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.61 Total: -60.49 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.29 -8.29 -41.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031393679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.577 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds