Wall clock time and date at job start Mon Mar 30 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47258 * 2 1 4 4 N 1.46505 * 109.47430 * 239.99795 * 2 1 3 5 5 C 1.35529 * 125.67632 * 54.93183 * 4 2 1 6 6 C 1.35448 * 108.87159 * 179.97438 * 5 4 2 7 7 C 1.39836 * 107.86698 * 359.97438 * 6 5 4 8 8 C 1.37645 * 125.67675 * 234.62399 * 4 2 1 9 9 C 1.46677 * 126.23590 * 0.02562 * 8 4 2 10 10 O 1.21692 * 120.00163 * 5.04319 * 9 8 4 11 11 N 1.34781 * 119.99784 * 185.04981 * 9 8 4 12 12 C 1.46502 * 119.99648 * 185.10785 * 11 9 8 13 13 C 1.53948 * 113.74333 * 253.74094 * 12 11 9 14 14 N 1.47816 * 86.03592 * 222.08497 * 13 12 11 15 15 C 1.36933 * 134.45495 * 204.64312 * 14 13 12 16 16 H 1.08004 * 120.00068 * 179.86354 * 15 14 13 17 17 C 1.38810 * 120.00197 * 359.86669 * 15 14 13 18 18 N 1.31613 * 119.99930 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47478 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47099 * 120.00259 * 19 17 15 22 22 H 1.48503 * 109.47082 * 239.99809 * 19 17 15 23 23 C 1.47587 * 91.04975 * 24.54599 * 14 13 12 24 24 H 1.09010 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47162 * 60.00828 * 1 2 3 26 26 H 1.09000 * 109.47429 * 299.99827 * 1 2 3 27 27 H 1.09003 * 109.47300 * 120.00082 * 2 1 3 28 28 H 1.09001 * 109.47288 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47032 * 300.00246 * 3 2 1 30 30 H 1.09000 * 109.46760 * 59.99763 * 3 2 1 31 31 H 1.08006 * 125.56139 * 359.95559 * 5 4 2 32 32 H 1.08000 * 126.06505 * 180.02562 * 6 5 4 33 33 H 1.07996 * 126.45963 * 179.97438 * 7 6 5 34 34 H 0.96990 * 120.00564 * 5.10953 * 11 9 8 35 35 H 1.09002 * 112.94443 * 25.32994 * 12 11 9 36 36 H 1.08998 * 113.76668 * 336.35133 * 13 12 11 37 37 H 1.09003 * 113.76808 * 107.74816 * 13 12 11 38 38 H 0.96999 * 119.99919 * 180.02562 * 18 17 15 39 39 H 1.08992 * 113.76770 * 221.14822 * 23 14 13 40 40 H 1.08997 * 113.76760 * 89.75801 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.6856 -0.3884 -2.4747 6 6 2.3304 -1.2393 -3.3082 7 6 3.0971 -2.1080 -2.5253 8 6 2.8963 -1.7507 -1.2088 9 6 3.5051 -2.3863 -0.0355 10 8 3.1757 -2.0401 1.0837 11 7 4.4296 -3.3538 -0.1968 12 6 4.9555 -4.0663 0.9702 13 6 6.3929 -3.6633 1.3465 14 7 6.6308 -5.1058 1.5646 15 6 7.5132 -5.8285 2.3222 16 1 7.4792 -6.9079 2.3083 17 6 8.4515 -5.1738 3.1083 18 7 8.4926 -3.8585 3.1258 19 14 9.6548 -6.1598 4.1424 20 1 9.4021 -7.6101 3.9480 21 1 11.0438 -5.8396 3.7256 22 1 9.4757 -5.8133 5.5753 23 6 5.5342 -5.4541 0.6402 24 1 -0.3634 -1.0278 0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.0153 0.4019 -2.7792 32 1 2.2647 -1.2453 -4.3861 33 1 3.7297 -2.9064 -2.8842 34 1 4.7466 -3.5783 -1.0855 35 1 4.2652 -4.0679 1.8138 36 1 6.9631 -3.2445 0.5173 37 1 6.4577 -3.0640 2.2547 38 1 9.1484 -3.4010 3.6748 39 1 4.9148 -6.2818 0.9854 40 1 5.8516 -5.5625 -0.3969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031393679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:07 Heat of formation + Delta-G solvation = 44.131638 kcal Electronic energy + Delta-G solvation = -21354.611536 eV Core-core repulsion = 18171.199637 eV Total energy + Delta-G solvation = -3183.411899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.41197 -40.60465 -38.98480 -36.41926 -35.10541 -33.78296 -30.73176 -30.49947 -29.09310 -28.23586 -26.64420 -25.41185 -23.73073 -22.99548 -21.52169 -21.22500 -20.08616 -18.79658 -18.55083 -17.37357 -17.00665 -16.59300 -16.31195 -15.75789 -15.66048 -15.23359 -15.16743 -14.82952 -14.56717 -13.75086 -13.63261 -13.54154 -13.35773 -13.24427 -13.14146 -13.06967 -12.94626 -12.83319 -12.66235 -12.31223 -12.28357 -12.06612 -11.89769 -11.54622 -10.92594 -10.86502 -10.05708 -9.63528 -9.10596 -8.99288 -7.93118 -5.28984 0.52918 1.45228 1.47169 1.57644 1.69694 1.89772 2.32724 2.41561 2.52004 3.23996 3.38300 3.69117 3.80490 3.82933 3.97655 4.17682 4.21383 4.29960 4.46297 4.47945 4.53419 4.61315 4.70488 4.73397 4.76201 4.88694 4.95144 5.05377 5.13475 5.18451 5.21527 5.26405 5.37182 5.46114 5.65715 5.86715 5.91595 6.10141 6.41850 6.59712 6.86500 7.22232 7.56673 8.49350 9.24029 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.003600 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.836434 B = 7776.189590 C = 8202.386514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.095 3.905 3 C -0.152 4.152 4 N -0.407 5.407 5 C 0.025 3.975 6 C -0.218 4.218 7 C -0.135 4.135 8 C -0.089 4.089 9 C 0.581 3.419 10 O -0.592 6.592 11 N -0.691 5.691 12 C 0.124 3.876 13 C 0.153 3.847 14 N -0.638 5.638 15 C -0.235 4.235 16 H 0.092 0.908 17 C -0.070 4.070 18 N -0.957 5.957 19 Si 0.984 3.016 20 H -0.260 1.260 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.124 3.876 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.198 0.802 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.415 0.585 35 H 0.092 0.908 36 H 0.024 0.976 37 H 0.032 0.968 38 H 0.248 0.752 39 H 0.068 0.932 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.987 8.209 -14.302 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 C -0.210 4.210 4 N -0.081 5.081 5 C -0.111 4.111 6 C -0.242 4.242 7 C -0.162 4.162 8 C -0.201 4.201 9 C 0.371 3.629 10 O -0.475 6.475 11 N -0.342 5.342 12 C 0.018 3.982 13 C 0.026 3.974 14 N -0.365 5.365 15 C -0.363 4.363 16 H 0.110 0.890 17 C -0.262 4.262 18 N -0.605 5.605 19 Si 0.812 3.188 20 H -0.184 1.184 21 H -0.219 1.219 22 H -0.221 1.221 23 C -0.002 4.002 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.215 0.785 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.252 0.748 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.093 8.508 -12.948 23.070 hybrid contribution 1.311 -0.384 0.525 1.463 sum -15.782 8.124 -12.423 21.666 Atomic orbital electron populations 1.22081 0.91272 1.02644 1.04658 1.22013 0.96943 0.94610 0.87014 1.22106 1.00776 0.93560 1.04529 1.44379 1.32571 1.23634 1.07472 1.22528 1.03779 1.03124 0.81666 1.21157 1.03310 0.99214 1.00473 1.21702 1.02500 1.01991 0.89982 1.19978 1.06092 0.99494 0.94574 1.17509 0.78737 0.79148 0.87471 1.90695 1.64776 1.64499 1.27532 1.45525 1.41045 1.36792 1.10829 1.23200 0.93904 0.92713 0.88419 1.22583 0.90756 0.87069 0.97023 1.46054 1.38178 1.03167 1.49114 1.19501 1.08539 0.90725 1.17528 0.88981 1.25734 1.01643 0.96763 1.02105 1.70056 1.38372 1.07879 1.44224 0.84931 0.77956 0.78373 0.77566 1.18394 1.21858 1.22051 1.23016 0.87844 0.94650 0.94652 0.93243 0.89798 0.89195 0.88666 0.94154 0.89903 0.89222 0.78512 0.81580 0.82257 0.74767 0.88953 0.95789 0.94917 0.94287 0.91409 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.16 71.98 0.66 -1.70 16 2 C 0.10 2.15 3.48 44.99 0.16 2.31 16 3 C -0.15 -2.75 9.30 71.98 0.67 -2.08 16 4 N -0.41 -9.77 2.64 -488.66 -1.29 -11.06 16 5 C 0.02 0.44 10.33 83.48 0.86 1.30 16 6 C -0.22 -3.92 10.81 22.01 0.24 -3.68 16 7 C -0.13 -3.00 10.35 22.57 0.23 -2.76 16 8 C -0.09 -2.51 6.89 40.35 0.28 -2.24 16 9 C 0.58 20.40 7.77 86.45 0.67 21.07 16 10 O -0.59 -25.08 14.03 -4.32 -0.06 -25.14 16 11 N -0.69 -22.59 5.35 -451.35 -2.41 -25.00 16 12 C 0.12 5.00 4.36 46.75 0.20 5.20 16 13 C 0.15 7.74 7.33 86.44 0.63 8.37 16 14 N -0.64 -33.42 3.70 -716.65 -2.65 -36.08 16 15 C -0.23 -13.36 10.70 84.03 0.90 -12.46 16 16 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 18 N -0.96 -59.98 11.39 21.65 0.25 -59.74 16 19 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 C 0.12 4.83 8.69 86.48 0.75 5.59 16 24 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.08 0.92 7.71 -2.39 -0.02 0.90 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 2.93 5.34 -2.39 -0.01 2.92 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.09 8.01 -2.39 -0.02 1.07 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.20 1.92 7.91 -2.91 -0.02 1.90 16 32 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.16 2.80 7.49 -2.91 -0.02 2.78 16 34 H 0.41 10.77 7.66 -92.72 -0.71 10.06 16 35 H 0.09 4.10 7.57 -2.39 -0.02 4.08 16 36 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.03 1.93 7.16 -2.39 -0.02 1.91 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 Total: -1.00 -75.96 332.66 2.91 -73.05 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.33 Total: 20.14 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.72 Total: 15.31 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -6.11 Total: -131.87 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.06 Total: -25.14 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.96 2.91 -73.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031393679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.186 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds