Wall clock time and date at job start Mon Mar 30 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 N 1.46500 * 109.47086 * 120.00372 * 2 1 3 5 5 C 1.35196 * 126.00387 * 274.99539 * 4 2 1 6 6 C 1.34564 * 107.61951 * 180.02562 * 5 4 2 7 7 C 1.40485 * 108.03914 * 359.90389 * 6 5 4 8 8 N 1.30128 * 108.22600 * 0.12366 * 7 6 5 9 9 C 1.50954 * 123.48711 * 180.15677 * 7 6 5 10 10 H 1.08996 * 109.71654 * 256.93273 * 9 7 6 11 11 N 1.46497 * 109.75017 * 136.30665 * 9 7 6 12 12 C 1.34781 * 119.99834 * 86.23106 * 11 9 7 13 13 O 1.21685 * 120.00294 * 359.97438 * 12 11 9 14 14 C 1.46373 * 119.99851 * 179.97438 * 12 11 9 15 15 H 1.08004 * 120.00064 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00083 * 179.97438 * 14 12 11 17 17 N 1.30675 * 119.99835 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00253 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.46987 * 90.00436 * 18 16 14 20 20 H 1.48495 * 109.47336 * 210.00566 * 18 16 14 21 21 H 1.48508 * 109.46950 * 330.00799 * 18 16 14 22 22 C 1.53375 * 108.20219 * 16.60842 * 9 7 6 23 23 C 1.53021 * 109.74949 * 309.34741 * 22 9 7 24 24 C 1.50863 * 128.34212 * 179.76864 * 6 5 4 25 25 H 1.08996 * 109.47277 * 59.99958 * 1 2 3 26 26 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47227 * 299.99677 * 1 2 3 28 28 H 1.08997 * 109.47227 * 240.00322 * 2 1 3 29 29 H 1.09004 * 109.46694 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47159 * 300.00114 * 3 2 1 31 31 H 1.09005 * 109.46751 * 60.00443 * 3 2 1 32 32 H 1.08006 * 126.18846 * 0.04759 * 5 4 2 33 33 H 0.96999 * 120.00494 * 266.22872 * 11 9 7 34 34 H 0.96998 * 119.99963 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.41986 * 189.26274 * 22 9 7 36 36 H 1.09001 * 109.42232 * 69.43583 * 22 9 7 37 37 H 1.09002 * 109.43007 * 191.80699 * 23 22 9 38 38 H 1.09005 * 109.43184 * 311.70853 * 23 22 9 39 39 H 1.09002 * 109.75603 * 77.08116 * 24 6 5 40 40 H 1.08996 * 109.67707 * 316.42977 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1934 -0.1377 2.4173 6 6 2.6544 -1.0996 3.2377 7 6 2.7652 -2.2876 2.4961 8 7 2.3861 -2.0424 1.2756 9 6 3.2489 -3.5925 3.0809 10 1 4.2790 -3.7736 2.7740 11 7 2.3952 -4.6892 2.6179 12 6 2.6573 -5.2979 1.4443 13 8 3.6029 -4.9362 0.7691 14 6 1.8046 -6.3941 0.9819 15 1 0.9651 -6.7148 1.5809 16 6 2.0767 -7.0262 -0.2379 17 7 3.0921 -6.6378 -0.9629 18 14 0.9881 -8.4247 -0.8284 19 1 -0.1237 -7.8754 -1.6453 20 1 1.7913 -9.3631 -1.6526 21 1 0.4312 -9.1472 0.3435 22 6 3.1750 -3.4891 4.6094 23 6 3.8682 -2.2068 5.0750 24 6 3.0116 -0.9910 4.6994 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.9982 0.8901 2.6859 33 1 1.6412 -4.9773 3.1558 34 1 3.2808 -7.0758 -1.8075 35 1 3.6705 -4.3514 5.0554 36 1 2.1308 -3.4705 4.9214 37 1 3.9993 -2.2377 6.1567 38 1 4.8429 -2.1261 4.5937 39 1 2.1027 -0.9816 5.3011 40 1 3.5772 -0.0753 4.8720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116669406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:55 Heat of formation + Delta-G solvation = 24.150109 kcal Electronic energy + Delta-G solvation = -21994.205188 eV Core-core repulsion = 18809.926824 eV Total energy + Delta-G solvation = -3184.278363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02415 -37.65091 -36.21495 -34.73697 -32.99168 -32.09879 -30.04699 -29.14291 -27.77814 -27.24860 -25.84483 -23.93794 -21.52105 -21.33145 -19.73072 -19.37886 -18.53406 -16.95514 -16.39988 -15.28056 -15.09469 -14.98821 -14.68772 -14.00119 -13.94305 -13.54534 -13.30174 -13.14222 -12.75284 -12.61433 -12.38787 -12.22669 -11.99820 -11.67435 -11.52317 -11.39188 -11.11058 -11.02622 -10.92710 -10.83551 -10.53649 -10.36548 -10.30540 -10.12407 -9.63415 -8.74025 -8.69388 -7.83287 -7.45501 -7.37597 -6.04890 -4.49642 2.42819 2.89905 3.20818 3.26705 3.29927 3.34650 4.20518 4.55337 4.73034 4.85733 4.87736 5.00661 5.06642 5.11989 5.20433 5.37593 5.38880 5.50768 5.58136 5.59154 5.70170 5.78641 5.81155 5.92725 6.00048 6.03769 6.08087 6.13348 6.19564 6.23849 6.39976 6.55536 6.61588 6.74554 7.23655 7.54319 7.55083 8.05480 8.21447 8.45564 8.48795 9.15616 9.69861 10.75042 10.96782 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.005946 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.595309 B = 4708.097901 C = 6020.375039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.157 3.843 3 C -0.160 4.160 4 N -0.384 5.384 5 C 0.043 3.957 6 C -0.244 4.244 7 C 0.072 3.928 8 N -0.237 5.237 9 C 0.234 3.766 10 H 0.090 0.910 11 N -0.756 5.756 12 C 0.561 3.439 13 O -0.568 6.568 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.089 3.911 17 N -0.768 5.768 18 Si 0.904 3.096 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.034 4.034 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.160 0.840 33 H 0.379 0.621 34 H 0.266 0.734 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 14.560 8.254 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 C -0.218 4.218 4 N -0.167 5.167 5 C -0.101 4.101 6 C -0.256 4.256 7 C -0.100 4.100 8 N -0.055 5.055 9 C 0.125 3.875 10 H 0.108 0.892 11 N -0.410 5.410 12 C 0.365 3.635 13 O -0.449 6.449 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.397 5.397 18 Si 0.729 3.271 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.072 4.072 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.178 0.822 33 H 0.211 0.789 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.874 14.385 6.230 15.938 hybrid contribution -0.963 -0.290 0.584 1.163 sum -3.837 14.095 6.815 16.119 Atomic orbital electron populations 1.22215 0.94140 1.03441 1.02255 1.21100 0.94469 0.92275 0.86698 1.22160 1.02224 0.94455 1.02997 1.49072 1.51939 1.07945 1.07757 1.21710 1.03140 0.98964 0.86310 1.20046 1.14478 0.93525 0.97586 1.23168 0.99055 0.96865 0.90899 1.77586 1.17759 0.90704 1.19482 1.18973 0.96135 0.81576 0.90787 0.89186 1.46185 1.33003 1.36499 1.25309 1.18124 0.85072 0.82023 0.78310 1.90601 1.32209 1.66974 1.55120 1.20853 1.13996 1.17632 1.05699 0.91756 1.25664 0.94546 0.96809 0.96005 1.70036 1.23709 1.35730 1.10246 0.86443 0.80369 0.81168 0.79144 1.19941 1.20555 1.18985 1.21792 1.01330 0.97894 0.94692 1.21513 0.99255 0.94149 1.00191 1.19911 0.98809 0.97847 0.90677 0.90964 0.91402 0.92334 0.88134 0.91637 0.90410 0.91897 0.82230 0.78944 0.92368 0.90977 0.91621 0.91740 0.91658 0.91898 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.52 37.16 0.35 -1.61 16 2 C 0.16 2.17 3.93 -67.93 -0.27 1.90 16 3 C -0.16 -1.57 8.83 37.16 0.33 -1.24 16 4 N -0.38 -6.78 3.54 -54.99 -0.19 -6.98 16 5 C 0.04 0.65 10.55 -17.37 -0.18 0.46 16 6 C -0.24 -4.04 5.89 -105.00 -0.62 -4.66 16 7 C 0.07 1.50 6.68 -82.34 -0.55 0.95 16 8 N -0.24 -5.49 12.56 33.75 0.42 -5.07 16 9 C 0.23 4.86 2.83 -68.77 -0.19 4.66 16 10 H 0.09 2.11 7.57 -51.93 -0.39 1.72 16 11 N -0.76 -17.91 5.08 -56.04 -0.28 -18.19 16 12 C 0.56 16.60 7.72 -12.99 -0.10 16.50 16 13 O -0.57 -18.98 14.68 5.20 0.08 -18.91 16 14 C -0.54 -16.04 9.54 -35.63 -0.34 -16.38 16 15 H 0.06 1.75 7.85 -52.48 -0.41 1.33 16 16 C 0.09 2.58 5.50 -17.36 -0.10 2.48 16 17 N -0.77 -23.90 11.83 55.55 0.66 -23.25 16 18 Si 0.90 20.95 29.56 -169.99 -5.02 15.92 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.12 -1.78 5.35 -26.53 -0.14 -1.93 16 23 C -0.11 -1.42 5.87 -26.52 -0.16 -1.58 16 24 C -0.03 -0.43 6.28 -27.60 -0.17 -0.60 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.53 7.16 -51.93 -0.37 0.16 16 32 H 0.16 1.77 7.27 -52.48 -0.38 1.38 16 33 H 0.38 8.00 8.59 -40.82 -0.35 7.65 16 34 H 0.27 7.52 8.29 -40.82 -0.34 7.18 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.87 8.10 -51.93 -0.42 0.44 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -37.82 331.38 -7.60 -45.43 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.11 Total: 7.08 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.14 Total: -1.02 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.60 Total: -53.49 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.08 Total: -18.91 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.82 -7.60 -45.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116669406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.576 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds