Wall clock time and date at job start Mon Mar 30 2020 02:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 N 1.46500 * 109.47086 * 120.00372 * 2 1 3 5 5 C 1.35196 * 126.00387 * 274.99539 * 4 2 1 6 6 C 1.34564 * 107.61951 * 180.02562 * 5 4 2 7 7 C 1.40485 * 108.03914 * 359.90389 * 6 5 4 8 8 N 1.30128 * 108.22600 * 0.12366 * 7 6 5 9 9 C 1.50954 * 123.48711 * 180.15677 * 7 6 5 10 10 H 1.08996 * 109.71654 * 256.93273 * 9 7 6 11 11 N 1.46497 * 109.75017 * 136.30665 * 9 7 6 12 12 C 1.34781 * 119.99834 * 86.23106 * 11 9 7 13 13 O 1.21685 * 120.00294 * 359.97438 * 12 11 9 14 14 C 1.46373 * 119.99851 * 179.97438 * 12 11 9 15 15 H 1.08004 * 120.00064 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00083 * 179.97438 * 14 12 11 17 17 N 1.30675 * 119.99835 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00253 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.46987 * 90.00436 * 18 16 14 20 20 H 1.48495 * 109.47336 * 210.00566 * 18 16 14 21 21 H 1.48508 * 109.46950 * 330.00799 * 18 16 14 22 22 C 1.53375 * 108.20219 * 16.60842 * 9 7 6 23 23 C 1.53021 * 109.74949 * 309.34741 * 22 9 7 24 24 C 1.50863 * 128.34212 * 179.76864 * 6 5 4 25 25 H 1.08996 * 109.47277 * 59.99958 * 1 2 3 26 26 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47227 * 299.99677 * 1 2 3 28 28 H 1.08997 * 109.47227 * 240.00322 * 2 1 3 29 29 H 1.09004 * 109.46694 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47159 * 300.00114 * 3 2 1 31 31 H 1.09005 * 109.46751 * 60.00443 * 3 2 1 32 32 H 1.08006 * 126.18846 * 0.04759 * 5 4 2 33 33 H 0.96999 * 120.00494 * 266.22872 * 11 9 7 34 34 H 0.96998 * 119.99963 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.41986 * 189.26274 * 22 9 7 36 36 H 1.09001 * 109.42232 * 69.43583 * 22 9 7 37 37 H 1.09002 * 109.43007 * 191.80699 * 23 22 9 38 38 H 1.09005 * 109.43184 * 311.70853 * 23 22 9 39 39 H 1.09002 * 109.75603 * 77.08116 * 24 6 5 40 40 H 1.08996 * 109.67707 * 316.42977 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1934 -0.1377 2.4173 6 6 2.6544 -1.0996 3.2377 7 6 2.7652 -2.2876 2.4961 8 7 2.3861 -2.0424 1.2756 9 6 3.2489 -3.5925 3.0809 10 1 4.2790 -3.7736 2.7740 11 7 2.3952 -4.6892 2.6179 12 6 2.6573 -5.2979 1.4443 13 8 3.6029 -4.9362 0.7691 14 6 1.8046 -6.3941 0.9819 15 1 0.9651 -6.7148 1.5809 16 6 2.0767 -7.0262 -0.2379 17 7 3.0921 -6.6378 -0.9629 18 14 0.9881 -8.4247 -0.8284 19 1 -0.1237 -7.8754 -1.6453 20 1 1.7913 -9.3631 -1.6526 21 1 0.4312 -9.1472 0.3435 22 6 3.1750 -3.4891 4.6094 23 6 3.8682 -2.2068 5.0750 24 6 3.0116 -0.9910 4.6994 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.9982 0.8901 2.6859 33 1 1.6412 -4.9773 3.1558 34 1 3.2808 -7.0758 -1.8075 35 1 3.6705 -4.3514 5.0554 36 1 2.1308 -3.4705 4.9214 37 1 3.9993 -2.2377 6.1567 38 1 4.8429 -2.1261 4.5937 39 1 2.1027 -0.9816 5.3011 40 1 3.5772 -0.0753 4.8720 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116669406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:54 Heat of formation + Delta-G solvation = -4.010645 kcal Electronic energy + Delta-G solvation = -21995.426330 eV Core-core repulsion = 18809.926824 eV Total energy + Delta-G solvation = -3185.499505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36657 -39.49185 -37.79534 -35.93971 -34.85496 -34.20940 -31.63444 -30.35812 -29.30679 -28.24187 -27.78200 -25.24814 -22.81757 -22.77492 -21.40195 -20.83572 -19.99146 -18.99412 -17.58162 -17.42136 -16.65048 -16.31604 -15.96388 -15.84679 -15.24235 -14.77392 -14.70329 -14.39915 -14.20191 -13.89616 -13.76107 -13.66923 -13.18976 -13.08778 -12.94598 -12.79970 -12.72845 -12.61109 -12.40676 -12.13962 -12.05920 -11.96881 -11.71361 -11.54803 -11.02710 -10.92094 -10.16992 -9.75385 -9.47594 -9.07685 -8.25840 -6.82767 1.14171 1.35767 1.38836 1.53446 1.69820 1.90703 2.24735 2.53001 3.18880 3.48567 3.66798 3.81152 3.92560 3.99979 4.05669 4.09057 4.16914 4.38553 4.48013 4.57171 4.60062 4.62751 4.73398 4.77434 4.88041 4.96841 5.00568 5.05060 5.11652 5.17934 5.25400 5.31512 5.36468 5.43605 5.51756 5.84592 5.91583 6.25637 6.31759 6.39382 6.88620 7.05627 7.61161 8.56363 8.74197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.005946 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.595309 B = 4708.097901 C = 6020.375039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 C -0.147 4.147 4 N -0.385 5.385 5 C 0.056 3.944 6 C -0.252 4.252 7 C 0.045 3.955 8 N -0.322 5.322 9 C 0.228 3.772 10 H 0.045 0.955 11 N -0.746 5.746 12 C 0.548 3.452 13 O -0.620 6.620 14 C -0.576 4.576 15 H 0.082 0.918 16 C 0.028 3.972 17 N -0.824 5.824 18 Si 0.997 3.003 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.247 1.247 22 C -0.107 4.107 23 C -0.109 4.109 24 C -0.029 4.029 25 H 0.102 0.898 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.212 0.788 33 H 0.391 0.609 34 H 0.272 0.728 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 16.448 10.322 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 C -0.205 4.205 4 N -0.168 5.168 5 C -0.088 4.088 6 C -0.265 4.265 7 C -0.124 4.124 8 N -0.142 5.142 9 C 0.120 3.880 10 H 0.064 0.936 11 N -0.399 5.399 12 C 0.351 3.649 13 O -0.505 6.505 14 C -0.613 4.613 15 H 0.100 0.900 16 C -0.187 4.187 17 N -0.453 5.453 18 Si 0.816 3.184 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.170 1.170 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.067 4.067 25 H 0.121 0.879 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.863 16.294 8.365 18.950 hybrid contribution -0.332 -0.777 -0.085 0.849 sum -5.195 15.517 8.280 18.339 Atomic orbital electron populations 1.22151 0.92610 1.01592 1.04663 1.21484 0.95743 0.94083 0.84586 1.22118 1.01448 0.91389 1.05550 1.49340 1.51355 1.06457 1.09698 1.22496 1.00909 1.00709 0.84705 1.20549 1.14382 0.91763 0.99758 1.23244 0.99762 0.98086 0.91359 1.77445 1.20699 0.94510 1.21502 1.19197 0.93096 0.81020 0.94689 0.93648 1.45829 1.33461 1.36795 1.23811 1.18468 0.84556 0.82438 0.79426 1.90548 1.34284 1.68572 1.57133 1.21410 1.14729 1.18268 1.06913 0.89995 1.26968 0.96047 0.99990 0.95650 1.70225 1.26273 1.37818 1.11022 0.85044 0.77746 0.76587 0.79004 1.19009 1.19514 1.16986 1.21763 1.02732 1.00094 0.89925 1.21537 0.98193 0.92671 1.02280 1.20043 0.99984 0.98766 0.87883 0.87909 0.95294 0.90468 0.91397 0.92762 0.87734 0.89394 0.77138 0.77517 0.91862 0.90273 0.90270 0.87837 0.93042 0.89787 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.52 71.98 0.69 -2.86 16 2 C 0.14 3.94 3.93 44.99 0.18 4.12 16 3 C -0.15 -2.51 8.83 71.98 0.64 -1.88 16 4 N -0.38 -13.75 3.54 -327.91 -1.16 -14.91 16 5 C 0.06 1.57 10.55 83.33 0.88 2.45 16 6 C -0.25 -8.00 5.89 -20.11 -0.12 -8.12 16 7 C 0.05 1.97 6.68 43.44 0.29 2.26 16 8 N -0.32 -15.82 12.56 -47.13 -0.59 -16.41 16 9 C 0.23 9.99 2.83 44.45 0.13 10.12 16 10 H 0.05 2.35 7.57 -2.39 -0.02 2.33 16 11 N -0.75 -37.34 5.08 -449.42 -2.28 -39.62 16 12 C 0.55 34.46 7.72 86.36 0.67 35.13 16 13 O -0.62 -44.73 14.68 -4.30 -0.06 -44.79 16 14 C -0.58 -35.27 9.54 24.83 0.24 -35.03 16 15 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 16 C 0.03 1.66 5.50 85.30 0.47 2.13 16 17 N -0.82 -53.84 11.83 21.84 0.26 -53.58 16 18 Si 1.00 43.81 29.56 68.60 2.03 45.84 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 22 C -0.11 -3.14 5.35 30.73 0.16 -2.98 16 23 C -0.11 -2.47 5.87 30.73 0.18 -2.29 16 24 C -0.03 -0.62 6.28 30.03 0.19 -0.43 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.08 7.16 -2.38 -0.02 1.06 16 32 H 0.21 3.56 7.27 -2.91 -0.02 3.54 16 33 H 0.39 17.16 8.59 -92.71 -0.80 16.36 16 34 H 0.27 16.09 8.29 -92.71 -0.77 15.32 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.13 8.10 -2.39 -0.02 2.11 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.31 8.10 -2.38 -0.02 1.29 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -92.50 331.38 3.01 -89.49 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.24 Total: 31.37 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 4.58 Total: 2.62 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -3.77 Total: -124.52 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.06 Total: -44.79 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -92.50 3.01 -89.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116669406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.476 kcal (2) G-P(sol) polarization free energy of solvation -92.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds