Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50705 * 119.99821 * 2 1 4 4 N 1.46497 * 109.46742 * 125.00537 * 3 2 1 5 5 C 1.35536 * 125.67349 * 260.35170 * 4 3 2 6 6 C 1.35452 * 108.87043 * 179.83145 * 5 4 3 7 7 C 1.39840 * 107.86363 * 0.43030 * 6 5 4 8 8 C 1.37646 * 125.68303 * 80.66167 * 4 3 2 9 9 C 1.46679 * 126.23279 * 359.97438 * 8 4 3 10 10 O 1.21703 * 119.99866 * 5.31883 * 9 8 4 11 11 N 1.34773 * 120.00212 * 185.31615 * 9 8 4 12 12 C 1.46503 * 120.00269 * 185.16062 * 11 9 8 13 13 C 1.52994 * 109.47383 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47294 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47481 * 179.97438 * 14 13 12 16 16 C 1.36937 * 120.00367 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99942 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00117 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00194 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47152 * 90.00188 * 20 18 16 22 22 H 1.48500 * 109.47265 * 210.00169 * 20 18 16 23 23 H 1.48501 * 109.47025 * 330.00067 * 20 18 16 24 24 H 1.07993 * 119.99653 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99746 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99905 * 179.72962 * 2 1 3 27 27 H 1.08998 * 109.46872 * 244.99983 * 3 2 1 28 28 H 1.09000 * 109.46866 * 5.00006 * 3 2 1 29 29 H 1.08000 * 125.56845 * 359.97438 * 5 4 3 30 30 H 1.08001 * 126.06951 * 180.16331 * 6 5 4 31 31 H 1.07999 * 126.45481 * 179.76109 * 7 6 5 32 32 H 0.97001 * 120.00205 * 5.17029 * 11 9 8 33 33 H 1.09009 * 109.46722 * 300.00645 * 12 11 9 34 34 H 1.08997 * 109.46868 * 59.99599 * 12 11 9 35 35 H 1.09002 * 109.46732 * 299.99833 * 13 12 11 36 36 H 1.08994 * 109.47086 * 59.99874 * 13 12 11 37 37 H 1.08998 * 109.47286 * 299.99900 * 14 13 12 38 38 H 1.09006 * 109.46902 * 59.99701 * 14 13 12 39 39 H 0.97008 * 119.99763 * 0.02562 * 15 14 13 40 40 H 0.96999 * 120.00403 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.7822 1.9591 2.3141 6 6 3.8578 1.7616 3.1133 7 6 4.7836 0.9901 2.4038 8 6 4.2308 0.7292 1.1681 9 6 4.8483 -0.0493 0.0891 10 8 4.2997 -0.1294 -0.9943 11 7 6.0232 -0.6760 0.2975 12 6 6.6958 -1.3587 -0.8105 13 6 7.9993 -1.9832 -0.3087 14 6 8.7021 -2.6957 -1.4660 15 7 9.9505 -3.2932 -0.9857 16 6 10.7542 -3.9877 -1.8500 17 1 10.4679 -4.0946 -2.8859 18 6 11.9373 -4.5533 -1.3950 19 7 12.2864 -4.4226 -0.1327 20 14 13.0340 -5.5000 -2.5742 21 1 14.0090 -4.5699 -3.1982 22 1 13.7647 -6.5571 -1.8301 23 1 12.2000 -6.1256 -3.6317 24 1 -0.5399 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9353 0.0044 27 1 2.6213 1.4026 -0.9314 28 1 1.3586 2.1316 0.0896 29 1 1.8991 2.5223 2.5773 30 1 3.9807 2.1373 4.1184 31 1 5.7493 0.6605 2.7575 32 1 6.4234 -0.6750 1.1811 33 1 6.0461 -2.1409 -1.2033 34 1 6.9170 -0.6400 -1.5995 35 1 8.6490 -1.2013 0.0843 36 1 7.7777 -2.7020 0.4800 37 1 8.0525 -3.4776 -1.8595 38 1 8.9237 -1.9765 -2.2546 39 1 10.2074 -3.1975 -0.0552 40 1 13.1130 -4.8182 0.1853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159974811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = 38.991156 kcal Electronic energy + Delta-G solvation = -20263.307811 eV Core-core repulsion = 17079.673004 eV Total energy + Delta-G solvation = -3183.634807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60492 -39.11063 -36.06912 -35.51723 -34.31894 -32.13769 -31.52509 -30.17075 -28.84593 -26.34228 -25.32450 -23.13249 -22.02160 -21.17552 -20.78476 -20.51333 -19.42236 -18.12503 -16.99727 -16.10689 -15.97210 -15.71502 -15.45836 -14.81531 -14.60827 -14.18644 -14.09482 -13.73352 -13.34329 -13.26681 -13.01700 -12.87879 -12.55786 -12.40878 -12.16078 -11.64456 -11.59551 -10.95494 -10.91712 -10.78363 -10.61344 -10.16472 -10.02621 -9.85240 -9.69914 -9.11341 -8.98092 -8.87482 -8.39767 -6.92995 -5.76651 -3.05628 1.31232 1.68831 2.55079 2.59521 3.30337 3.33425 3.44519 3.49582 3.51372 4.34291 4.50004 4.59463 4.65947 4.76392 4.91595 5.12016 5.16853 5.19290 5.28229 5.31476 5.49852 5.58006 5.63179 5.84796 5.92417 6.00775 6.06645 6.16536 6.19613 6.22994 6.32525 6.41210 6.58052 6.77676 6.79398 6.83649 6.98985 7.47447 7.70571 8.14537 8.42358 9.53429 10.10585 10.45249 11.46397 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.002578 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.930322 B =10857.764067 C =11461.602923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.128 3.872 4 N -0.406 5.406 5 C 0.014 3.986 6 C -0.207 4.207 7 C -0.141 4.141 8 C -0.049 4.049 9 C 0.585 3.415 10 O -0.551 6.551 11 N -0.715 5.715 12 C 0.126 3.874 13 C -0.138 4.138 14 C 0.157 3.843 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.041 14.057 6.072 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.179 4.179 3 C 0.008 3.992 4 N -0.079 5.079 5 C -0.121 4.121 6 C -0.231 4.231 7 C -0.167 4.167 8 C -0.162 4.162 9 C 0.372 3.628 10 O -0.431 6.431 11 N -0.366 5.366 12 C 0.002 3.998 13 C -0.176 4.176 14 C 0.029 3.971 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.184 0.816 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.238 0.762 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.570 13.895 4.793 27.777 hybrid contribution 0.935 -0.507 0.208 1.084 sum -22.635 13.388 5.001 26.769 Atomic orbital electron populations 1.23888 0.95465 1.02306 0.99772 1.23090 0.95967 0.98494 1.00365 1.21132 0.91796 0.96720 0.89547 1.43965 1.13062 1.38164 1.12668 1.22004 1.01582 1.02781 0.85755 1.20823 0.95088 1.06437 1.00786 1.21400 1.00422 1.02356 0.92553 1.20123 0.89365 1.08872 0.97849 1.17000 0.80878 0.78692 0.86197 1.90794 1.62948 1.63137 1.26175 1.45733 1.22086 1.54635 1.14114 1.21381 0.93459 0.96396 0.88531 1.21951 0.94842 1.00415 1.00440 1.20513 0.88406 0.94630 0.93588 1.42341 1.20770 1.64054 1.10652 1.19243 1.00245 1.25427 0.92174 0.91102 1.24754 0.98441 1.01585 0.96311 1.69658 1.24934 1.50058 1.13675 0.86165 0.80650 0.79393 0.79848 1.21685 1.21747 1.20726 0.88355 0.87786 0.86614 0.86915 0.88930 0.81635 0.84008 0.83755 0.76190 0.91172 0.91250 0.91168 0.91183 0.96051 0.96049 0.78273 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 14.32 29.01 0.42 -0.84 16 2 C -0.16 -1.49 9.66 -36.03 -0.35 -1.84 16 3 C 0.13 1.16 5.83 -5.19 -0.03 1.13 16 4 N -0.41 -4.22 2.75 -114.16 -0.31 -4.53 16 5 C 0.01 0.12 11.36 -16.91 -0.19 -0.07 16 6 C -0.21 -1.87 10.81 -39.98 -0.43 -2.30 16 7 C -0.14 -1.44 10.35 -39.12 -0.40 -1.84 16 8 C -0.05 -0.58 6.87 -81.98 -0.56 -1.14 16 9 C 0.58 7.98 7.77 -12.85 -0.10 7.88 16 10 O -0.55 -8.89 14.72 5.19 0.08 -8.81 16 11 N -0.71 -8.79 5.53 -61.62 -0.34 -9.13 16 12 C 0.13 1.73 5.68 -4.04 -0.02 1.71 16 13 C -0.14 -2.12 5.44 -26.73 -0.15 -2.27 16 14 C 0.16 3.14 6.26 -4.04 -0.03 3.11 16 15 N -0.73 -18.78 5.60 -59.91 -0.34 -19.11 16 16 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 25 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.11 1.21 6.76 -51.93 -0.35 0.86 16 28 H 0.09 0.56 7.76 -51.93 -0.40 0.16 16 29 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.14 1.19 7.49 -52.49 -0.39 0.80 16 32 H 0.40 4.07 7.42 -40.82 -0.30 3.77 16 33 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.20 7.67 -40.82 -0.31 9.88 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -33.59 344.54 -8.06 -41.66 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.95 Total: 8.86 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.10 Total: -3.97 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.27 Total: -60.49 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.59 -8.06 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159974811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.647 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds